Wall clock time and date at job start Tue Mar 31 2020 22:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.70354 * 2 1 4 4 C 1.53192 * 109.58595 * 120.35666 * 2 1 3 5 5 C 1.53038 * 109.31281 * 174.42342 * 4 2 1 6 6 H 1.09007 * 109.44630 * 178.62180 * 5 4 2 7 7 N 1.46494 * 109.46338 * 58.65279 * 5 4 2 8 8 C 1.36936 * 120.00286 * 154.92842 * 7 5 4 9 9 H 1.08002 * 119.99772 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00136 * 179.97438 * 8 7 5 11 11 N 1.31613 * 120.00101 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99941 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47326 * 90.00169 * 12 10 8 14 14 H 1.48501 * 109.46973 * 210.00602 * 12 10 8 15 15 H 1.48500 * 109.46831 * 330.00152 * 12 10 8 16 16 C 1.53040 * 109.53624 * 298.62895 * 5 4 2 17 17 C 1.53197 * 109.30982 * 61.36740 * 16 5 4 18 18 N 1.46920 * 108.89393 * 305.29169 * 17 16 5 19 19 C 1.34783 * 120.63098 * 233.67226 * 18 17 16 20 20 O 1.21562 * 119.99663 * 186.22804 * 19 18 17 21 21 C 1.47768 * 119.99702 * 6.23223 * 19 18 17 22 22 C 1.40629 * 119.80616 * 33.70096 * 21 19 18 23 23 C 1.35697 * 120.91981 * 179.73033 * 22 21 19 24 24 C 1.40761 * 120.10954 * 0.52061 * 23 22 21 25 25 N 1.33653 * 120.82991 * 179.78084 * 24 23 22 26 26 C 1.31118 * 121.39743 * 179.97438 * 25 24 23 27 27 C 1.39321 * 121.76531 * 0.02836 * 26 25 24 28 28 C 1.36582 * 119.90407 * 359.97136 * 27 26 25 29 29 C 1.40887 * 118.16217 * 0.02562 * 28 27 26 30 30 C 1.38544 * 119.79704 * 213.97425 * 21 19 18 31 31 H 1.09000 * 109.47435 * 292.50810 * 1 2 3 32 32 H 1.09000 * 109.46722 * 52.50664 * 1 2 3 33 33 H 1.08997 * 109.47258 * 172.50128 * 1 2 3 34 34 H 1.08999 * 109.49968 * 54.46793 * 4 2 1 35 35 H 1.09000 * 109.49357 * 294.37428 * 4 2 1 36 36 H 0.97001 * 120.00057 * 334.93198 * 7 5 4 37 37 H 0.96995 * 120.00177 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.49918 * 301.41662 * 16 5 4 39 39 H 1.09001 * 109.52404 * 181.33278 * 16 5 4 40 40 H 1.09005 * 109.58564 * 65.15496 * 17 16 5 41 41 H 1.09004 * 109.58455 * 185.42835 * 17 16 5 42 42 H 1.08000 * 119.53478 * 359.97438 * 22 21 19 43 43 H 1.07991 * 119.94687 * 180.27818 * 23 22 21 44 44 H 1.07993 * 119.11541 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.04399 * 179.97438 * 27 26 25 46 46 H 1.08000 * 120.91588 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.30385 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1702 6 1 3.9375 -1.3450 2.0670 7 7 4.1571 0.4897 1.0750 8 6 5.4409 0.7040 1.5004 9 1 6.0190 -0.1133 1.9057 10 6 5.9997 1.9714 1.4096 11 7 5.2954 2.9673 0.9152 12 14 7.7513 2.2636 1.9893 13 1 8.6900 2.0400 0.8606 14 1 7.8853 3.6603 2.4755 15 1 8.0709 1.3226 3.0927 16 6 3.9569 -1.6658 -0.0634 17 6 3.4650 -0.9470 -1.3237 18 7 2.0222 -0.6998 -1.1979 19 6 1.1692 -1.1081 -2.1583 20 8 -0.0051 -0.7997 -2.0993 21 6 1.6617 -1.9306 -3.2829 22 6 2.7020 -2.8529 -3.0713 23 6 3.1679 -3.6234 -4.0864 24 6 2.6183 -3.4998 -5.3764 25 7 3.0692 -4.2483 -6.3877 26 6 2.5650 -4.1427 -7.5935 27 6 1.5372 -3.2477 -7.8829 28 6 1.0292 -2.4520 -6.8959 29 6 1.5735 -2.5685 -5.6016 30 6 1.0996 -1.7843 -4.5407 31 1 -0.3634 0.3934 0.9494 32 1 -0.3633 0.6255 -0.8154 33 1 -0.3633 -1.0188 -0.1341 34 1 1.6029 -1.7253 1.2913 35 1 1.7660 -0.1668 2.1368 36 1 3.6380 1.2237 0.7106 37 1 5.6858 3.8530 0.8522 38 1 3.4983 -2.6529 -0.0051 39 1 5.0411 -1.7702 -0.1039 40 1 3.9904 0.0019 -1.4317 41 1 3.6542 -1.5708 -2.1974 42 1 3.1333 -2.9521 -2.0861 43 1 3.9643 -4.3299 -3.9053 44 1 2.9570 -4.7661 -8.3834 45 1 1.1429 -3.1833 -8.8862 46 1 0.2322 -1.7529 -7.1019 47 1 0.3041 -1.0720 -4.7026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044731466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:11 Heat of formation + Delta-G solvation = 63.901317 kcal Electronic energy + Delta-G solvation = -29562.113755 eV Core-core repulsion = 25711.116953 eV Total energy + Delta-G solvation = -3850.996802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.25217 -40.23527 -37.64715 -36.97037 -34.29185 -33.73464 -32.86340 -31.94440 -30.52901 -30.30133 -29.09035 -27.09336 -25.19952 -24.37566 -23.79691 -23.40892 -22.57291 -21.66187 -20.44131 -19.00582 -18.18632 -17.28313 -17.16736 -17.11138 -16.00510 -15.78685 -15.16293 -14.95955 -14.64275 -14.59322 -14.36147 -14.06624 -13.88953 -13.81164 -13.39754 -13.37824 -13.25181 -12.96447 -12.66130 -12.25711 -12.09480 -11.99986 -11.74455 -11.63100 -11.39348 -11.14722 -10.92939 -10.84859 -10.81568 -10.63053 -10.35854 -10.25128 -9.97981 -9.77517 -9.67058 -9.07185 -9.00405 -8.81858 -8.50593 -8.17944 -7.02127 -5.81647 -3.10837 0.04677 0.45064 1.70402 2.31810 3.08607 3.24432 3.39953 3.45764 3.47219 3.87920 4.01279 4.32412 4.43926 4.45195 4.55083 4.60733 4.81497 4.86488 4.97716 5.19154 5.21152 5.26885 5.35040 5.47347 5.50769 5.57335 5.63909 5.66296 5.71028 5.74146 5.78044 5.86172 5.95751 6.01043 6.10494 6.12095 6.15627 6.23670 6.28269 6.39703 6.46888 6.51714 6.57995 6.68988 6.74861 6.81084 7.02108 7.62727 7.65764 7.68568 8.33305 8.36666 9.48211 10.04550 10.39255 11.40725 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013797 B = 0.003034 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.937695 B = 9225.715955 C =10326.061955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.722 5.722 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.086 3.914 18 N -0.588 5.588 19 C 0.555 3.445 20 O -0.538 6.538 21 C -0.121 4.121 22 C -0.081 4.081 23 C -0.101 4.101 24 C 0.141 3.859 25 N -0.477 5.477 26 C 0.135 3.865 27 C -0.183 4.183 28 C -0.047 4.047 29 C -0.112 4.112 30 C -0.036 4.036 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.951 -13.354 -14.253 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.064 3.936 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.035 4.035 18 N -0.320 5.320 19 C 0.343 3.657 20 O -0.418 6.418 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.120 4.120 24 C 0.019 3.981 25 N -0.185 5.185 26 C -0.037 4.037 27 C -0.203 4.203 28 C -0.073 4.073 29 C -0.114 4.114 30 C -0.056 4.056 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.159 0.841 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.690 -13.729 -13.814 21.327 hybrid contribution 0.400 1.094 -0.072 1.167 sum -8.290 -12.635 -13.886 20.523 Atomic orbital electron populations 1.22177 0.93223 1.03184 1.00706 1.21342 0.94812 0.96160 0.83316 0.90010 1.22250 0.97406 1.00276 0.97295 1.20178 0.90422 0.88140 0.94884 0.93007 1.42510 1.13842 1.04688 1.75357 1.19223 0.89786 0.94157 1.33938 0.91181 1.24725 0.98255 0.95916 1.01878 1.69646 1.36482 1.00634 1.51231 0.86225 0.84792 0.77108 0.78256 1.21767 1.21853 1.20805 1.22547 1.01587 0.97887 0.97213 1.22413 0.79172 1.02796 0.99132 1.48138 1.07733 1.56272 1.19829 1.18192 0.85741 0.79813 0.81938 1.90808 1.16940 1.57437 1.76597 1.20096 0.98347 0.99281 0.94672 1.21391 0.94176 0.93769 1.00747 1.20712 1.00932 1.00065 0.90247 1.19005 0.93014 0.92402 0.93660 1.68069 1.27429 1.22959 1.00021 1.23016 0.91984 0.94886 0.93843 1.21884 0.99246 0.98363 1.00765 1.21554 0.97510 0.96879 0.91358 1.18786 0.98671 0.99048 0.94877 1.21340 0.97226 0.96618 0.90416 0.93755 0.90894 0.92004 0.92040 0.90584 0.78131 0.93485 0.93205 0.90550 0.89602 0.89047 0.83099 0.84089 0.82344 0.84399 0.84137 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.62 37.16 0.28 -1.84 16 2 C 0.15 2.42 3.20 -67.44 -0.22 2.20 16 3 H 0.08 1.55 6.64 -51.93 -0.34 1.20 16 4 C -0.13 -2.14 5.07 -26.61 -0.13 -2.27 16 5 C 0.17 3.17 3.10 -67.89 -0.21 2.96 16 6 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 7 N -0.72 -16.62 4.31 -53.39 -0.23 -16.85 16 8 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 9 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 12 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C -0.15 -2.37 5.43 -26.61 -0.14 -2.51 16 17 C 0.09 1.35 5.25 -3.71 -0.02 1.33 16 18 N -0.59 -9.34 2.98 -166.14 -0.50 -9.83 16 19 C 0.55 8.74 7.18 -12.36 -0.09 8.65 16 20 O -0.54 -9.45 12.39 5.31 0.07 -9.38 16 21 C -0.12 -1.63 5.44 -104.99 -0.57 -2.21 16 22 C -0.08 -0.98 7.27 -39.59 -0.29 -1.27 16 23 C -0.10 -1.18 9.95 -39.54 -0.39 -1.57 16 24 C 0.14 1.74 6.61 -84.77 -0.56 1.18 16 25 N -0.48 -5.59 10.33 -10.92 -0.11 -5.71 16 26 C 0.14 1.16 11.15 -17.45 -0.19 0.97 16 27 C -0.18 -1.35 10.03 -39.78 -0.40 -1.75 16 28 C -0.05 -0.41 9.89 -39.18 -0.39 -0.80 16 29 C -0.11 -1.29 5.74 -106.82 -0.61 -1.90 16 30 C -0.04 -0.45 9.35 -38.74 -0.36 -0.81 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.22 6.69 -51.93 -0.35 0.88 16 33 H 0.06 0.99 6.83 -51.93 -0.35 0.64 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.38 9.51 6.06 -40.82 -0.25 9.27 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.05 0.67 7.58 -51.93 -0.39 0.27 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 41 H 0.09 1.24 3.53 -51.93 -0.18 1.05 16 42 H 0.15 1.71 4.94 -52.49 -0.26 1.45 16 43 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.14 1.59 7.96 -52.49 -0.42 1.17 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -31.19 368.63 -10.36 -41.55 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.30 Total: 10.81 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -4.54 Total: -6.44 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.11 Total: -58.81 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.19 -10.36 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044731466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.452 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds