Wall clock time and date at job start Tue Mar 31 2020 22:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.59068 * 2 1 4 4 C 1.53166 * 109.58893 * 239.56568 * 2 1 3 5 5 C 1.53040 * 109.32644 * 185.56898 * 4 2 1 6 6 H 1.08999 * 109.46129 * 181.38190 * 5 4 2 7 7 N 1.46498 * 109.46465 * 301.35994 * 5 4 2 8 8 C 1.36934 * 120.00277 * 205.03047 * 7 5 4 9 9 H 1.08000 * 119.99914 * 359.97438 * 8 7 5 10 10 C 1.38813 * 119.99974 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99972 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99879 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47125 * 89.99597 * 12 10 8 14 14 H 1.48507 * 109.47167 * 329.99745 * 12 10 8 15 15 H 1.48498 * 109.47138 * 209.99943 * 12 10 8 16 16 C 1.53048 * 109.52624 * 61.37546 * 5 4 2 17 17 C 1.53195 * 109.30981 * 298.64028 * 16 5 4 18 18 N 1.46917 * 108.77691 * 54.63332 * 17 16 5 19 19 C 1.34776 * 120.63033 * 126.41284 * 18 17 16 20 20 O 1.21567 * 120.00377 * 177.82221 * 19 18 17 21 21 C 1.47762 * 119.99899 * 357.82405 * 19 18 17 22 22 C 1.40596 * 120.26785 * 32.97800 * 21 19 18 23 23 N 1.30797 * 121.53686 * 179.71181 * 22 21 19 24 24 C 1.33823 * 121.71785 * 0.54824 * 23 22 21 25 25 C 1.40523 * 120.81193 * 179.70302 * 24 23 22 26 26 C 1.36132 * 119.81485 * 180.02562 * 25 24 23 27 27 C 1.39340 * 121.08603 * 359.97438 * 26 25 24 28 28 C 1.36136 * 120.83594 * 0.02562 * 27 26 25 29 29 C 1.40541 * 119.62222 * 359.97438 * 28 27 26 30 30 C 1.39018 * 120.26540 * 213.25036 * 21 19 18 31 31 H 1.09007 * 109.46804 * 306.39951 * 1 2 3 32 32 H 1.09000 * 109.47219 * 66.39287 * 1 2 3 33 33 H 1.08995 * 109.47266 * 186.40162 * 1 2 3 34 34 H 1.08997 * 109.47778 * 65.62174 * 4 2 1 35 35 H 1.08998 * 109.50402 * 305.53213 * 4 2 1 36 36 H 0.96998 * 119.99572 * 25.02424 * 7 5 4 37 37 H 0.96990 * 120.00361 * 0.02562 * 11 10 8 38 38 H 1.08992 * 109.49744 * 58.59319 * 16 5 4 39 39 H 1.09002 * 109.49697 * 178.65713 * 16 5 4 40 40 H 1.08996 * 109.58440 * 174.42694 * 17 16 5 41 41 H 1.09007 * 109.58455 * 294.70565 * 17 16 5 42 42 H 1.08004 * 119.23232 * 359.96953 * 22 21 19 43 43 H 1.08001 * 120.09045 * 0.06372 * 25 24 23 44 44 H 1.08005 * 119.45601 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.58286 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.19142 * 179.97438 * 28 27 26 47 47 H 1.07995 * 121.01569 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0435 -0.7310 -1.2442 5 6 3.5675 -0.8494 -1.1691 6 1 3.9376 -1.3475 -2.0652 7 7 4.1571 0.4884 -1.0756 8 6 5.4411 0.7021 -1.5007 9 1 6.0193 -0.1158 -1.9046 10 6 5.9995 1.9699 -1.4125 11 7 5.2947 2.9667 -0.9208 12 14 7.7514 2.2611 -1.9918 13 1 7.7418 2.6362 -3.4286 14 1 8.5459 1.0197 -1.8096 15 1 8.3593 3.3588 -1.1977 16 6 3.9569 -1.6657 0.0655 17 6 3.4650 -0.9453 1.3249 18 7 2.0226 -0.6980 1.1953 19 6 1.1675 -1.1035 2.1550 20 8 -0.0190 -0.8581 2.0552 21 6 1.6721 -1.8462 3.3284 22 6 2.9521 -1.5741 3.8426 23 7 3.4212 -2.2125 4.8833 24 6 2.7125 -3.1630 5.5040 25 6 3.2377 -3.8413 6.6170 26 6 2.4993 -4.8051 7.2326 27 6 1.2239 -5.1343 6.7782 28 6 0.6807 -4.4998 5.7032 29 6 1.4146 -3.4994 5.0431 30 6 0.8873 -2.8237 3.9295 31 1 -0.3633 0.6099 0.8272 32 1 -0.3633 0.4115 -0.9416 33 1 -0.3633 -1.0212 0.1146 34 1 1.7658 -0.1694 -2.1361 35 1 1.6030 -1.7269 -1.2889 36 1 3.6378 1.2229 -0.7126 37 1 4.3852 2.8154 -0.6197 38 1 3.4984 -2.6528 0.0085 39 1 5.0412 -1.7700 0.1055 40 1 3.6519 -1.5690 2.1991 41 1 3.9921 0.0027 1.4330 42 1 3.5605 -0.8174 3.3697 43 1 4.2242 -3.5982 6.9833 44 1 2.9084 -5.3225 8.0878 45 1 0.6591 -5.9027 7.2852 46 1 -0.3087 -4.7636 5.3596 47 1 -0.0979 -3.0557 3.5528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044755274.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:50 Heat of formation + Delta-G solvation = 70.400180 kcal Electronic energy + Delta-G solvation = -29628.027494 eV Core-core repulsion = 25777.312504 eV Total energy + Delta-G solvation = -3850.714990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.39021 -40.17956 -37.69485 -37.23847 -34.52716 -33.81430 -32.97400 -32.10000 -30.56246 -30.32328 -28.87564 -27.13482 -25.14539 -24.80892 -23.69092 -23.40287 -22.41247 -21.89473 -20.55666 -18.97972 -18.46133 -17.80595 -17.35913 -16.68490 -16.07494 -15.82420 -15.52252 -15.02013 -14.83033 -14.44605 -14.40575 -14.28218 -14.04299 -13.72280 -13.51452 -13.33774 -13.29058 -13.20820 -12.72171 -12.21458 -12.14791 -12.00075 -11.95922 -11.81285 -11.52775 -11.25534 -10.84456 -10.78128 -10.74620 -10.54271 -10.36162 -10.23130 -10.02220 -9.83781 -9.20788 -9.11157 -9.00219 -8.86044 -8.58050 -8.30777 -7.08907 -6.13427 -3.14580 0.00894 0.38033 1.62458 2.37410 2.91773 3.11152 3.50013 3.53994 3.68101 3.82426 3.99504 4.26343 4.34910 4.50909 4.54078 4.63854 4.68389 4.81271 4.91130 5.06212 5.14784 5.16993 5.25327 5.37235 5.45773 5.51881 5.56109 5.59881 5.61304 5.65378 5.74111 5.75436 5.87668 5.95538 5.99100 6.04438 6.08325 6.16478 6.19520 6.29391 6.37112 6.46119 6.49136 6.62005 6.62594 6.70080 6.91334 7.53379 7.62641 7.78051 8.20731 8.71356 9.17314 10.03741 10.18724 11.34311 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014622 B = 0.003063 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.473579 B = 9139.439474 C =10442.639875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.148 4.148 17 C 0.085 3.915 18 N -0.588 5.588 19 C 0.561 3.439 20 O -0.536 6.536 21 C -0.183 4.183 22 C 0.148 3.852 23 N -0.475 5.475 24 C 0.139 3.861 25 C -0.096 4.096 26 C -0.096 4.096 27 C -0.122 4.122 28 C -0.087 4.087 29 C -0.112 4.112 30 C 0.002 3.998 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.366 0.634 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.184 0.816 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -16.360 12.991 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.189 4.189 17 C -0.037 4.037 18 N -0.319 5.319 19 C 0.348 3.652 20 O -0.415 6.415 21 C -0.188 4.188 22 C -0.024 4.024 23 N -0.182 5.182 24 C 0.017 3.983 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.140 4.140 28 C -0.106 4.106 29 C -0.114 4.114 30 C -0.024 4.024 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.200 0.800 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.600 -15.100 13.046 21.353 hybrid contribution -1.945 -1.194 -0.140 2.286 sum -9.545 -16.294 12.906 22.872 Atomic orbital electron populations 1.22202 0.92939 1.03334 1.00704 1.21285 0.95072 0.95755 0.83447 0.90426 1.22265 0.97467 1.00396 0.97227 1.20127 0.90186 0.87723 0.95088 0.92952 1.42513 1.14104 1.04689 1.76361 1.20050 0.90434 0.96998 1.38712 0.91738 1.25723 1.06047 0.91561 1.00783 1.70864 1.10967 1.32360 1.44612 0.83218 0.74510 0.75140 0.75955 1.22403 1.22167 1.21438 1.22499 1.01651 0.97926 0.96821 1.22600 0.79232 1.02199 0.99658 1.48079 1.07747 1.56269 1.19841 1.18004 0.85882 0.79236 0.82071 1.90828 1.15905 1.57088 1.77655 1.21083 0.97027 1.00927 0.99777 1.23816 0.91665 0.96878 0.90078 1.68077 1.35112 1.07065 1.07971 1.19069 0.90307 0.93568 0.95310 1.20860 1.00711 0.95669 0.94236 1.20974 0.94321 0.96720 0.99537 1.20930 0.95847 1.00246 0.96989 1.21048 0.99529 0.94595 0.95415 1.18813 0.95867 0.99203 0.97545 1.21838 0.98630 0.90759 0.91190 0.90922 0.93806 0.91698 0.90642 0.91886 0.79924 0.93447 0.93180 0.90542 0.88979 0.89331 0.79999 0.84441 0.85145 0.85355 0.85001 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.60 37.16 0.28 -1.77 16 2 C 0.15 2.38 3.19 -67.61 -0.22 2.16 16 3 H 0.08 1.40 6.65 -51.93 -0.35 1.05 16 4 C -0.13 -2.17 5.07 -26.62 -0.13 -2.30 16 5 C 0.18 3.33 3.10 -67.89 -0.21 3.12 16 6 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 7 N -0.73 -16.87 4.31 -53.38 -0.23 -17.10 16 8 C -0.33 -8.75 9.93 -15.06 -0.15 -8.90 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 11 N -0.94 -28.15 13.70 55.49 0.76 -27.39 16 12 Si 1.08 25.29 29.92 -169.99 -5.09 20.21 16 13 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 17 C 0.08 1.32 4.65 -3.71 -0.02 1.30 16 18 N -0.59 -9.16 2.97 -166.37 -0.49 -9.66 16 19 C 0.56 8.67 7.31 -12.37 -0.09 8.58 16 20 O -0.54 -9.16 12.29 5.31 0.07 -9.10 16 21 C -0.18 -2.51 5.53 -104.83 -0.58 -3.09 16 22 C 0.15 2.02 8.59 -17.10 -0.15 1.87 16 23 N -0.47 -6.61 10.30 -11.31 -0.12 -6.73 16 24 C 0.14 1.73 6.61 -84.79 -0.56 1.17 16 25 C -0.10 -0.96 9.97 -39.48 -0.39 -1.35 16 26 C -0.10 -0.73 9.94 -39.93 -0.40 -1.12 16 27 C -0.12 -0.89 9.96 -39.93 -0.40 -1.29 16 28 C -0.09 -0.75 9.77 -39.47 -0.39 -1.13 16 29 C -0.11 -1.28 5.74 -106.81 -0.61 -1.89 16 30 C 0.00 0.03 9.48 -38.43 -0.36 -0.34 16 31 H 0.07 1.19 6.70 -51.93 -0.35 0.84 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.01 6.78 -51.93 -0.35 0.66 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.37 8.77 4.90 -40.82 -0.20 8.57 16 37 H 0.25 7.47 6.77 -40.82 -0.28 7.19 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.09 1.27 3.52 -53.38 -0.19 1.09 16 41 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 42 H 0.18 2.40 5.30 -52.48 -0.28 2.12 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.15 1.55 8.01 -52.49 -0.42 1.13 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -31.64 367.74 -10.42 -42.06 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.24 Total: 11.03 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -4.62 Total: -8.87 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.08 Total: -60.87 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.64 -10.42 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044755274.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.461 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds