Wall clock time and date at job start Tue Mar 31 2020 22:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.70528 * 2 1 4 4 C 1.52763 * 109.50811 * 239.88320 * 2 1 3 5 5 C 1.53046 * 109.38363 * 185.70638 * 4 2 1 6 6 H 1.08998 * 109.45860 * 301.21949 * 5 4 2 7 7 N 1.46499 * 109.45975 * 181.26525 * 5 4 2 8 8 C 1.36939 * 120.00174 * 154.93617 * 7 5 4 9 9 H 1.08000 * 119.99639 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00067 * 179.97438 * 8 7 5 11 11 N 1.31612 * 119.99956 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00058 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47235 * 90.00001 * 12 10 8 14 14 H 1.48496 * 109.47269 * 210.00077 * 12 10 8 15 15 H 1.48498 * 109.47095 * 330.00153 * 12 10 8 16 16 C 1.53037 * 109.53667 * 61.23913 * 5 4 2 17 17 C 1.53184 * 109.31629 * 298.63591 * 16 5 4 18 18 N 1.46920 * 109.58739 * 120.35818 * 2 1 3 19 19 C 1.34784 * 120.63045 * 353.42117 * 18 2 1 20 20 O 1.21558 * 119.99646 * 5.49066 * 19 18 2 21 21 C 1.47758 * 119.99908 * 185.50095 * 19 18 2 22 22 C 1.40604 * 120.26986 * 36.94221 * 21 19 18 23 23 N 1.30799 * 121.53682 * 179.97438 * 22 21 19 24 24 C 1.33817 * 121.71820 * 359.96060 * 23 22 21 25 25 C 1.40528 * 120.81422 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.81812 * 179.97438 * 25 24 23 27 27 C 1.39345 * 121.08034 * 0.04943 * 26 25 24 28 28 C 1.36139 * 120.83976 * 359.97302 * 27 26 25 29 29 C 1.40541 * 119.61864 * 359.97438 * 28 27 26 30 30 C 1.39010 * 120.26734 * 216.87700 * 21 19 18 31 31 H 1.09006 * 109.47437 * 303.52773 * 1 2 3 32 32 H 1.09003 * 109.47425 * 63.52259 * 1 2 3 33 33 H 1.09003 * 109.47333 * 183.52649 * 1 2 3 34 34 H 1.09000 * 109.56332 * 65.67348 * 4 2 1 35 35 H 1.08994 * 109.39047 * 305.63286 * 4 2 1 36 36 H 0.97002 * 120.00036 * 334.92757 * 7 5 4 37 37 H 0.97001 * 120.00263 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.50010 * 178.68122 * 16 5 4 39 39 H 1.09002 * 109.49683 * 58.59159 * 16 5 4 40 40 H 1.08995 * 109.58964 * 294.84689 * 17 16 5 41 41 H 1.08998 * 109.70693 * 174.49070 * 17 16 5 42 42 H 1.08003 * 119.23025 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.09108 * 359.95549 * 25 24 23 44 44 H 1.07993 * 119.46231 * 180.02562 * 26 25 24 45 45 H 1.08004 * 119.57888 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.19384 * 180.02562 * 28 27 26 47 47 H 1.07996 * 121.01678 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8462 -1.1727 6 1 4.0057 0.1475 -1.0997 7 7 4.0577 -1.5120 -2.3806 8 6 5.3419 -1.2969 -2.8045 9 1 5.9905 -0.6360 -2.2486 10 6 5.8100 -1.9282 -3.9487 11 7 7.0441 -1.7210 -4.3565 12 14 4.6884 -3.0717 -4.9098 13 1 3.9536 -2.2942 -5.9397 14 1 5.5024 -4.1233 -5.5707 15 1 3.7175 -3.7069 -3.9830 16 6 3.9522 -1.6687 0.0580 17 6 3.4644 -0.9520 1.3210 18 7 2.0225 -0.6996 1.1944 19 6 1.1672 -1.1071 2.1531 20 8 -0.0313 -0.9869 1.9894 21 6 1.6865 -1.6998 3.4030 22 6 2.8685 -1.2069 3.9835 23 7 3.3500 -1.7126 5.0895 24 6 2.7430 -2.7223 5.7242 25 6 3.2769 -3.2507 6.9118 26 6 2.6423 -4.2777 7.5410 27 6 1.4662 -4.8197 7.0266 28 6 0.9183 -4.3353 5.8783 29 6 1.5460 -3.2747 5.2028 30 6 1.0097 -2.7482 4.0154 31 1 -0.3634 0.5676 0.8567 32 1 -0.3634 0.4582 -0.9199 33 1 -0.3634 -1.0257 0.0632 34 1 1.7632 -0.1565 -2.1349 35 1 1.5963 -1.7168 -1.2943 36 1 3.4751 -2.1054 -2.8800 37 1 7.3712 -2.1618 -5.1562 38 1 5.0362 -1.7762 0.0965 39 1 3.4904 -2.6542 -0.0025 40 1 3.9928 -0.0051 1.4310 41 1 3.6506 -1.5778 2.1938 42 1 3.3910 -0.3918 3.5049 43 1 4.1883 -2.8435 7.3241 44 1 3.0574 -4.6792 8.4536 45 1 0.9831 -5.6345 7.5455 46 1 0.0062 -4.7629 5.4892 47 1 0.0993 -3.1458 3.5917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044755275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:53 Heat of formation + Delta-G solvation = 58.107555 kcal Electronic energy + Delta-G solvation = -29114.181117 eV Core-core repulsion = 25262.933078 eV Total energy + Delta-G solvation = -3851.248039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43400 -40.26646 -37.68512 -37.26259 -34.75034 -33.91430 -32.99311 -32.00575 -30.73735 -30.40944 -29.76014 -27.26079 -25.20685 -24.71231 -24.03960 -22.76205 -22.40176 -21.93222 -20.40878 -19.65728 -18.48861 -17.89996 -17.59467 -16.90144 -16.15821 -15.89752 -15.51512 -15.02279 -14.82802 -14.53780 -14.50618 -14.34819 -14.13662 -13.84405 -13.59697 -13.44509 -13.32989 -12.99555 -12.58273 -12.46492 -12.26833 -12.08133 -12.04963 -11.92700 -11.81531 -11.46401 -11.04811 -10.97865 -10.90814 -10.84034 -10.57330 -10.32388 -10.01896 -9.93423 -9.63154 -9.20937 -9.04459 -8.94292 -8.66794 -8.54095 -7.32725 -5.81331 -3.17387 -0.05885 0.31032 1.55870 2.29099 2.74519 2.97931 3.34702 3.37912 3.42865 3.75174 3.88850 4.18258 4.25838 4.44537 4.44925 4.55381 4.60621 4.75501 4.83673 4.93454 4.94359 5.08425 5.10945 5.19739 5.35854 5.39171 5.44446 5.50819 5.53369 5.54671 5.67507 5.68516 5.76507 5.86778 5.93164 5.98019 6.02092 6.03215 6.11943 6.21704 6.28187 6.32205 6.38668 6.42668 6.62402 6.75273 6.89477 7.34618 7.53069 7.93965 8.05694 8.37684 9.15680 9.88509 10.08023 11.36825 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002782 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.862623 B =10061.061627 C =10976.553220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.151 4.151 17 C 0.095 3.905 18 N -0.595 5.595 19 C 0.564 3.436 20 O -0.531 6.531 21 C -0.186 4.186 22 C 0.159 3.841 23 N -0.475 5.475 24 C 0.139 3.861 25 C -0.097 4.097 26 C -0.094 4.094 27 C -0.121 4.121 28 C -0.087 4.087 29 C -0.111 4.111 30 C 0.003 3.997 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.170 0.830 43 H 0.138 0.862 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.133 0.867 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.017 -2.399 23.142 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.192 4.192 17 C -0.028 4.028 18 N -0.327 5.327 19 C 0.351 3.649 20 O -0.409 6.409 21 C -0.191 4.191 22 C -0.014 4.014 23 N -0.183 5.183 24 C 0.018 3.982 25 C -0.115 4.115 26 C -0.114 4.114 27 C -0.139 4.139 28 C -0.106 4.106 29 C -0.113 4.113 30 C -0.023 4.023 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.187 0.813 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.151 0.849 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.603 -1.969 23.431 26.678 hybrid contribution -1.212 -1.324 -1.218 2.169 sum -13.815 -3.293 22.213 26.365 Atomic orbital electron populations 1.22218 0.92684 1.03675 1.00676 1.21254 0.95538 0.95196 0.83437 0.90559 1.22281 0.97569 1.01092 0.96951 1.20145 0.90786 0.95396 0.86295 0.92383 1.42793 1.13163 1.55151 1.27824 1.19060 0.87660 1.23527 1.07207 0.89129 1.24670 0.96089 1.00069 0.98209 1.69695 1.15161 1.47208 1.25967 0.86565 0.80373 0.81265 0.80391 1.21056 1.21768 1.20390 1.22649 1.02320 0.99787 0.94423 1.22288 0.79339 1.00986 1.00170 1.48130 1.07762 1.56765 1.20058 1.18027 0.86055 0.78146 0.82640 1.90844 1.15040 1.55751 1.79295 1.21053 0.98685 1.00639 0.98722 1.23347 0.90726 0.97131 0.90210 1.68011 1.31887 1.10030 1.08334 1.19026 0.91457 0.92600 0.95086 1.20855 1.00524 0.96556 0.93590 1.20990 0.95068 0.95560 0.99788 1.20952 0.96253 1.00337 0.96343 1.21064 0.99531 0.94837 0.95144 1.18809 0.97061 0.98822 0.96627 1.21856 0.97247 0.91744 0.91468 0.91258 0.93690 0.91150 0.90322 0.91866 0.80640 0.93023 0.89935 0.92294 0.90609 0.89786 0.81328 0.84422 0.85086 0.85287 0.84938 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.58 37.15 0.28 -1.48 16 2 C 0.15 1.95 3.47 -67.83 -0.24 1.71 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.10 4.81 -26.83 -0.13 -2.23 16 5 C 0.18 3.26 2.73 -67.89 -0.19 3.07 16 6 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 7 N -0.75 -16.93 4.92 -53.38 -0.26 -17.19 16 8 C -0.24 -6.65 10.41 -15.06 -0.16 -6.80 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 12 Si 0.88 21.84 27.73 -169.99 -4.71 17.13 16 13 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 16 C -0.15 -2.39 5.66 -26.62 -0.15 -2.54 16 17 C 0.10 1.16 4.81 -3.71 -0.02 1.15 16 18 N -0.59 -7.64 2.98 -166.62 -0.50 -8.14 16 19 C 0.56 7.53 7.29 -12.37 -0.09 7.44 16 20 O -0.53 -8.11 12.28 5.32 0.07 -8.05 16 21 C -0.19 -2.21 5.24 -104.83 -0.55 -2.76 16 22 C 0.16 1.80 8.50 -17.10 -0.15 1.66 16 23 N -0.48 -5.78 10.30 -10.67 -0.11 -5.89 16 24 C 0.14 1.58 6.61 -84.79 -0.56 1.02 16 25 C -0.10 -0.87 9.97 -39.48 -0.39 -1.27 16 26 C -0.09 -0.65 9.94 -39.93 -0.40 -1.05 16 27 C -0.12 -0.81 9.96 -39.92 -0.40 -1.21 16 28 C -0.09 -0.70 9.77 -39.47 -0.39 -1.08 16 29 C -0.11 -1.16 5.74 -106.82 -0.61 -1.78 16 30 C 0.00 0.04 9.50 -38.43 -0.37 -0.33 16 31 H 0.07 0.95 6.75 -51.93 -0.35 0.60 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.02 6.75 -51.93 -0.35 0.67 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.81 8.07 -51.93 -0.42 0.40 16 41 H 0.08 0.96 4.54 -51.93 -0.24 0.72 16 42 H 0.17 1.61 6.19 -52.48 -0.32 1.29 16 43 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.15 1.42 8.05 -52.49 -0.42 1.00 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -32.83 371.96 -10.30 -43.13 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -6.57 Total: 7.87 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -4.59 Total: -6.43 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.09 Total: -59.25 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.07 Total: -8.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.83 -10.30 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044755275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.237 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds