Wall clock time and date at job start Tue Mar 31 2020 22:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.70528 * 2 1 4 4 C 1.52763 * 109.50811 * 239.88320 * 2 1 3 5 5 C 1.53046 * 109.38363 * 185.70638 * 4 2 1 6 6 H 1.08998 * 109.45860 * 301.21949 * 5 4 2 7 7 N 1.46499 * 109.45975 * 181.26525 * 5 4 2 8 8 C 1.36939 * 120.00174 * 154.93617 * 7 5 4 9 9 H 1.08000 * 119.99639 * 359.97438 * 8 7 5 10 10 C 1.38811 * 120.00067 * 179.97438 * 8 7 5 11 11 N 1.31612 * 119.99956 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00058 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47235 * 90.00001 * 12 10 8 14 14 H 1.48496 * 109.47269 * 210.00077 * 12 10 8 15 15 H 1.48498 * 109.47095 * 330.00153 * 12 10 8 16 16 C 1.53037 * 109.53667 * 61.23913 * 5 4 2 17 17 C 1.53184 * 109.31629 * 298.63591 * 16 5 4 18 18 N 1.46920 * 109.58739 * 120.35818 * 2 1 3 19 19 C 1.34784 * 120.63045 * 353.42117 * 18 2 1 20 20 O 1.21558 * 119.99646 * 5.49066 * 19 18 2 21 21 C 1.47758 * 119.99908 * 185.50095 * 19 18 2 22 22 C 1.40604 * 120.26986 * 36.94221 * 21 19 18 23 23 N 1.30799 * 121.53682 * 179.97438 * 22 21 19 24 24 C 1.33817 * 121.71820 * 359.96060 * 23 22 21 25 25 C 1.40528 * 120.81422 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.81812 * 179.97438 * 25 24 23 27 27 C 1.39345 * 121.08034 * 0.04943 * 26 25 24 28 28 C 1.36139 * 120.83976 * 359.97302 * 27 26 25 29 29 C 1.40541 * 119.61864 * 359.97438 * 28 27 26 30 30 C 1.39010 * 120.26734 * 216.87700 * 21 19 18 31 31 H 1.09006 * 109.47437 * 303.52773 * 1 2 3 32 32 H 1.09003 * 109.47425 * 63.52259 * 1 2 3 33 33 H 1.09003 * 109.47333 * 183.52649 * 1 2 3 34 34 H 1.09000 * 109.56332 * 65.67348 * 4 2 1 35 35 H 1.08994 * 109.39047 * 305.63286 * 4 2 1 36 36 H 0.97002 * 120.00036 * 334.92757 * 7 5 4 37 37 H 0.97001 * 120.00263 * 180.02562 * 11 10 8 38 38 H 1.08999 * 109.50010 * 178.68122 * 16 5 4 39 39 H 1.09002 * 109.49683 * 58.59159 * 16 5 4 40 40 H 1.08995 * 109.58964 * 294.84689 * 17 16 5 41 41 H 1.08998 * 109.70693 * 174.49070 * 17 16 5 42 42 H 1.08003 * 119.23025 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.09108 * 359.95549 * 25 24 23 44 44 H 1.07993 * 119.46231 * 180.02562 * 26 25 24 45 45 H 1.08004 * 119.57888 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.19384 * 180.02562 * 28 27 26 47 47 H 1.07996 * 121.01678 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8462 -1.1727 6 1 4.0057 0.1475 -1.0997 7 7 4.0577 -1.5120 -2.3806 8 6 5.3419 -1.2969 -2.8045 9 1 5.9905 -0.6360 -2.2486 10 6 5.8100 -1.9282 -3.9487 11 7 7.0441 -1.7210 -4.3565 12 14 4.6884 -3.0717 -4.9098 13 1 3.9536 -2.2942 -5.9397 14 1 5.5024 -4.1233 -5.5707 15 1 3.7175 -3.7069 -3.9830 16 6 3.9522 -1.6687 0.0580 17 6 3.4644 -0.9520 1.3210 18 7 2.0225 -0.6996 1.1944 19 6 1.1672 -1.1071 2.1531 20 8 -0.0313 -0.9869 1.9894 21 6 1.6865 -1.6998 3.4030 22 6 2.8685 -1.2069 3.9835 23 7 3.3500 -1.7126 5.0895 24 6 2.7430 -2.7223 5.7242 25 6 3.2769 -3.2507 6.9118 26 6 2.6423 -4.2777 7.5410 27 6 1.4662 -4.8197 7.0266 28 6 0.9183 -4.3353 5.8783 29 6 1.5460 -3.2747 5.2028 30 6 1.0097 -2.7482 4.0154 31 1 -0.3634 0.5676 0.8567 32 1 -0.3634 0.4582 -0.9199 33 1 -0.3634 -1.0257 0.0632 34 1 1.7632 -0.1565 -2.1349 35 1 1.5963 -1.7168 -1.2943 36 1 3.4751 -2.1054 -2.8800 37 1 7.3712 -2.1618 -5.1562 38 1 5.0362 -1.7762 0.0965 39 1 3.4904 -2.6542 -0.0025 40 1 3.9928 -0.0051 1.4310 41 1 3.6506 -1.5778 2.1938 42 1 3.3910 -0.3918 3.5049 43 1 4.1883 -2.8435 7.3241 44 1 3.0574 -4.6792 8.4536 45 1 0.9831 -5.6345 7.5455 46 1 0.0062 -4.7629 5.4892 47 1 0.0993 -3.1458 3.5917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044755275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:52 Heat of formation + Delta-G solvation = 38.217850 kcal Electronic energy + Delta-G solvation = -29115.043599 eV Core-core repulsion = 25262.933078 eV Total energy + Delta-G solvation = -3852.110521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.29797 -41.20268 -38.88993 -38.02850 -36.34057 -34.75382 -34.07528 -33.74833 -31.79050 -31.27795 -31.01025 -28.48616 -26.18920 -25.77963 -25.21799 -24.15315 -23.13379 -23.00273 -21.78702 -20.79532 -19.63339 -19.21260 -18.65884 -17.78920 -17.02097 -16.88161 -16.72072 -16.54825 -15.93266 -15.59473 -15.42603 -15.39168 -15.14390 -15.04429 -14.68336 -14.60377 -14.43636 -14.18705 -14.02861 -13.77605 -13.36673 -13.21012 -13.03431 -12.93418 -12.67392 -12.62267 -12.57486 -12.38500 -12.15119 -12.04173 -11.94234 -11.78332 -11.62845 -11.38243 -10.94847 -10.83933 -10.17047 -9.82122 -9.67019 -9.30958 -9.30278 -8.01405 -5.34363 -0.79296 -0.42786 0.84135 1.37711 1.39742 1.46373 1.46996 1.77540 2.09473 2.48437 3.01493 3.11265 3.29658 3.34515 3.49008 3.54022 3.64481 3.75757 3.83132 3.91795 3.97422 4.04544 4.18881 4.21830 4.30587 4.31783 4.42596 4.50923 4.57382 4.60645 4.68753 4.70378 4.74413 4.84773 4.94501 4.96387 5.02277 5.04242 5.14466 5.23802 5.33849 5.39493 5.40129 5.44612 5.45676 5.66415 5.78981 5.83661 6.22789 6.30162 6.73765 7.02654 7.08583 7.85172 8.03173 9.19993 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002782 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.862623 B =10061.061627 C =10976.553220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.151 3.849 3 H 0.092 0.908 4 C -0.128 4.128 5 C 0.177 3.823 6 H 0.054 0.946 7 N -0.752 5.752 8 C -0.223 4.223 9 H 0.062 0.938 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.951 3.049 13 H -0.279 1.279 14 H -0.299 1.299 15 H -0.256 1.256 16 C -0.142 4.142 17 C 0.106 3.894 18 N -0.595 5.595 19 C 0.567 3.433 20 O -0.553 6.553 21 C -0.203 4.203 22 C 0.154 3.846 23 N -0.494 5.494 24 C 0.116 3.884 25 C -0.119 4.119 26 C -0.081 4.081 27 C -0.115 4.115 28 C -0.095 4.095 29 C -0.126 4.126 30 C 0.004 3.996 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.363 0.637 37 H 0.256 0.744 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.181 0.819 43 H 0.143 0.857 44 H 0.163 0.837 45 H 0.163 0.837 46 H 0.154 0.846 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 -3.611 25.214 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.110 0.890 4 C -0.167 4.167 5 C 0.069 3.931 6 H 0.073 0.927 7 N -0.394 5.394 8 C -0.354 4.354 9 H 0.080 0.920 10 C -0.255 4.255 11 N -0.635 5.635 12 Si 0.779 3.221 13 H -0.205 1.205 14 H -0.226 1.226 15 H -0.181 1.181 16 C -0.183 4.183 17 C -0.017 4.017 18 N -0.326 5.326 19 C 0.356 3.644 20 O -0.433 6.433 21 C -0.208 4.208 22 C -0.020 4.020 23 N -0.202 5.202 24 C -0.005 4.005 25 C -0.137 4.137 26 C -0.100 4.100 27 C -0.133 4.133 28 C -0.113 4.113 29 C -0.128 4.128 30 C -0.023 4.023 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.196 0.804 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.198 0.802 43 H 0.161 0.839 44 H 0.181 0.819 45 H 0.180 0.820 46 H 0.172 0.828 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.708 -3.171 25.557 29.657 hybrid contribution -0.581 -0.976 -1.652 2.005 sum -15.289 -4.147 23.905 28.678 Atomic orbital electron populations 1.22071 0.92289 1.02648 1.01139 1.21264 0.95717 0.95667 0.82567 0.88975 1.22151 0.95061 1.01215 0.98316 1.20396 0.92674 0.94926 0.85120 0.92746 1.42843 1.11562 1.55583 1.29459 1.19033 0.88899 1.21394 1.06067 0.91962 1.25438 0.97604 1.02628 0.99879 1.69868 1.17441 1.49301 1.26840 0.85471 0.78604 0.78959 0.79077 1.20512 1.22603 1.18135 1.22444 1.01093 0.99412 0.95335 1.22229 0.79161 1.01815 0.98507 1.48125 1.07822 1.56681 1.20014 1.18191 0.85710 0.77570 0.82959 1.90832 1.15910 1.56620 1.79911 1.20949 0.99562 1.01740 0.98585 1.23476 0.90731 0.97471 0.90299 1.68012 1.32554 1.10838 1.08803 1.19436 0.92163 0.92858 0.96016 1.21074 1.01406 0.97782 0.93484 1.21427 0.94498 0.93964 1.00135 1.21401 0.95788 1.00435 0.95641 1.21388 1.00272 0.94146 0.95529 1.19018 0.97204 0.99801 0.96790 1.22053 0.97280 0.91346 0.91575 0.91836 0.92244 0.92771 0.89869 0.92415 0.80442 0.93469 0.91805 0.93211 0.88586 0.88581 0.80206 0.83891 0.81920 0.81983 0.82845 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.58 71.98 0.55 -2.51 16 2 C 0.15 3.70 3.47 44.83 0.16 3.86 16 3 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 4 C -0.13 -3.68 4.81 30.53 0.15 -3.53 16 5 C 0.18 6.16 2.73 45.02 0.12 6.28 16 6 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 7 N -0.75 -33.72 4.92 -322.81 -1.59 -35.31 16 8 C -0.22 -12.28 10.41 84.03 0.87 -11.40 16 9 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 10 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 11 N -0.98 -62.47 13.97 21.65 0.30 -62.16 16 12 Si 0.95 45.37 27.73 68.60 1.90 47.27 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 15 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 16 C -0.14 -4.45 5.66 30.67 0.17 -4.27 16 17 C 0.11 2.47 4.81 86.36 0.42 2.89 16 18 N -0.59 -14.56 2.98 -799.33 -2.38 -16.94 16 19 C 0.57 14.68 7.29 86.76 0.63 15.31 16 20 O -0.55 -16.53 12.28 -3.90 -0.05 -16.58 16 21 C -0.20 -4.73 5.24 -20.00 -0.10 -4.83 16 22 C 0.15 3.41 8.50 85.42 0.73 4.14 16 23 N -0.49 -11.91 10.30 -187.68 -1.93 -13.84 16 24 C 0.12 2.54 6.61 40.27 0.27 2.80 16 25 C -0.12 -1.97 9.97 22.34 0.22 -1.75 16 26 C -0.08 -0.87 9.94 22.05 0.22 -0.65 16 27 C -0.12 -1.13 9.96 22.05 0.22 -0.92 16 28 C -0.09 -1.28 9.77 22.34 0.22 -1.06 16 29 C -0.13 -2.50 5.74 -21.29 -0.12 -2.62 16 30 C 0.00 0.08 9.50 23.01 0.22 0.30 16 31 H 0.06 1.65 6.75 -2.38 -0.02 1.64 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 1.51 6.75 -2.39 -0.02 1.50 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 37 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.10 1.90 8.07 -2.39 -0.02 1.88 16 41 H 0.10 2.10 4.54 -2.39 -0.01 2.09 16 42 H 0.18 3.31 6.19 -2.91 -0.02 3.29 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 46 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.16 2.88 8.05 -2.91 -0.02 2.86 16 Total: -1.00 -72.73 371.96 2.06 -70.67 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.41 Total: 28.13 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.40 Total: -1.23 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -5.60 Total: -128.25 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.05 Total: -16.58 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Total: -72.73 2.06 -70.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044755275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.885 kcal (2) G-P(sol) polarization free energy of solvation -72.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds