Wall clock time and date at job start Tue Mar 31 2020 22:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.70230 * 2 1 4 4 C 1.52765 * 109.50628 * 239.88015 * 2 1 3 5 5 C 1.53042 * 109.38140 * 185.70866 * 4 2 1 6 6 H 1.09001 * 109.44627 * 301.22888 * 5 4 2 7 7 N 1.46499 * 109.45923 * 181.25988 * 5 4 2 8 8 C 1.36935 * 119.99840 * 154.92914 * 7 5 4 9 9 H 1.08002 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99946 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 119.99941 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47176 * 90.00085 * 12 10 8 14 14 H 1.48500 * 109.47219 * 210.00200 * 12 10 8 15 15 H 1.48503 * 109.47419 * 329.99799 * 12 10 8 16 16 C 1.53042 * 109.53681 * 61.23929 * 5 4 2 17 17 C 1.53189 * 109.31364 * 298.63211 * 16 5 4 18 18 N 1.46927 * 108.77487 * 54.64006 * 17 16 5 19 19 C 1.34772 * 120.63251 * 126.36460 * 18 17 16 20 20 O 1.21548 * 119.99979 * 185.71485 * 19 18 17 21 21 C 1.47878 * 120.00146 * 5.72150 * 19 18 17 22 22 C 1.40571 * 119.70996 * 37.87488 * 21 19 18 23 23 C 1.35810 * 120.73761 * 180.26206 * 22 21 19 24 24 C 1.40542 * 119.98097 * 0.03848 * 23 22 21 25 25 C 1.40827 * 121.12611 * 179.97438 * 24 23 22 26 26 C 1.36554 * 118.19911 * 179.97438 * 25 24 23 27 27 C 1.39413 * 119.93359 * 0.02562 * 26 25 24 28 28 N 1.31019 * 121.71959 * 359.97438 * 27 26 25 29 29 C 1.33746 * 121.35077 * 0.03576 * 28 27 26 30 30 C 1.38407 * 119.70472 * 218.15558 * 21 19 18 31 31 H 1.09000 * 109.47013 * 303.56643 * 1 2 3 32 32 H 1.09004 * 109.47078 * 63.56432 * 1 2 3 33 33 H 1.08997 * 109.47286 * 183.56697 * 1 2 3 34 34 H 1.08997 * 109.56208 * 65.67137 * 4 2 1 35 35 H 1.09004 * 109.38703 * 305.63423 * 4 2 1 36 36 H 0.97005 * 119.99970 * 334.93530 * 7 5 4 37 37 H 0.97003 * 120.00090 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.49183 * 178.68623 * 16 5 4 39 39 H 1.08999 * 109.49900 * 58.58841 * 16 5 4 40 40 H 1.08998 * 109.59043 * 294.85272 * 17 16 5 41 41 H 1.08998 * 109.58653 * 174.42357 * 17 16 5 42 42 H 1.08007 * 119.62625 * 0.26074 * 22 21 19 43 43 H 1.08007 * 120.00448 * 180.02562 * 23 22 21 44 44 H 1.08005 * 120.89665 * 0.02562 * 25 24 23 45 45 H 1.07998 * 120.02705 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.13882 * 179.97438 * 27 26 25 47 47 H 1.08007 * 120.23586 * 359.69679 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1727 6 1 4.0055 0.1475 -1.0995 7 7 4.0577 -1.5123 -2.3804 8 6 5.3419 -1.2971 -2.8044 9 1 5.9907 -0.6368 -2.2482 10 6 5.8097 -1.9278 -3.9491 11 7 7.0441 -1.7213 -4.3564 12 14 4.6873 -3.0693 -4.9115 13 1 3.9535 -2.2900 -5.9409 14 1 5.5005 -4.1210 -5.5733 15 1 3.7155 -3.7046 -3.9856 16 6 3.9522 -1.6688 0.0581 17 6 3.4645 -0.9520 1.3211 18 7 2.0226 -0.6996 1.1945 19 6 1.1674 -1.1069 2.1532 20 8 -0.0310 -0.9858 1.9900 21 6 1.6870 -1.7012 3.4036 22 6 2.8596 -1.1877 3.9843 23 6 3.3581 -1.7210 5.1295 24 6 2.7006 -2.7990 5.7466 25 6 3.1966 -3.3708 6.9342 26 6 2.5099 -4.4157 7.4831 27 6 1.3518 -4.8874 6.8668 28 7 0.8929 -4.3533 5.7619 29 6 1.5178 -3.3279 5.1730 30 6 1.0175 -2.7620 3.9887 31 1 -0.3633 0.5682 0.8563 32 1 -0.3633 0.4575 -0.9202 33 1 -0.3634 -1.0256 0.0639 34 1 1.7632 -0.1566 -2.1349 35 1 1.5963 -1.7170 -1.2942 36 1 3.4750 -2.1057 -2.8799 37 1 7.3710 -2.1617 -5.1565 38 1 5.0362 -1.7762 0.0965 39 1 3.4904 -2.6543 -0.0022 40 1 3.9929 -0.0050 1.4309 41 1 3.6504 -1.5798 2.1924 42 1 3.3698 -0.3598 3.5144 43 1 4.2598 -1.3169 5.5657 44 1 4.0953 -2.9925 7.3986 45 1 2.8641 -4.8767 8.3932 46 1 0.8189 -5.7148 7.3118 47 1 0.1168 -3.1519 3.5379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044792445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:37 Heat of formation + Delta-G solvation = 58.322076 kcal Electronic energy + Delta-G solvation = -29103.201982 eV Core-core repulsion = 25251.963246 eV Total energy + Delta-G solvation = -3851.238736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.35199 -40.39469 -37.73289 -37.07481 -34.72446 -33.86184 -32.98997 -31.99362 -30.73270 -30.40591 -29.76724 -27.23434 -25.31218 -24.54924 -23.99752 -22.82392 -22.51960 -21.77707 -20.42380 -19.70113 -18.43710 -17.63591 -17.32920 -17.15627 -16.17697 -15.91643 -15.40442 -15.00446 -14.78271 -14.61025 -14.59754 -14.32872 -14.16735 -13.84387 -13.50883 -13.42262 -13.32976 -12.98555 -12.57592 -12.47868 -12.26393 -12.11186 -12.03018 -11.89490 -11.82349 -11.37451 -11.03299 -10.95787 -10.90796 -10.86655 -10.55359 -10.30223 -9.94098 -9.86474 -9.63173 -9.22619 -9.03632 -8.93203 -8.64374 -8.50098 -7.32086 -5.81389 -3.17187 -0.03586 0.32916 1.57983 2.23936 2.78727 3.05094 3.35481 3.39018 3.43508 3.76779 3.91734 4.18626 4.29036 4.40985 4.50458 4.55843 4.62496 4.74712 4.83027 4.96283 5.01229 5.09610 5.15355 5.21957 5.38293 5.40726 5.45861 5.51438 5.53857 5.56093 5.69169 5.71031 5.79459 5.89296 5.90641 5.98710 6.00430 6.03716 6.12996 6.24643 6.31412 6.34445 6.39757 6.42822 6.65293 6.77644 6.91314 7.39905 7.54865 7.93895 8.11711 8.37747 9.15900 9.88885 10.08632 11.36789 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.002779 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.738077 B =10074.213921 C =10969.360411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.148 3.852 3 H 0.075 0.925 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.096 3.904 18 N -0.595 5.595 19 C 0.558 3.442 20 O -0.529 6.529 21 C -0.108 4.108 22 C -0.092 4.092 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.060 4.060 26 C -0.171 4.171 27 C 0.128 3.872 28 N -0.467 5.467 29 C 0.119 3.881 30 C -0.032 4.032 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.161 0.839 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.399 -0.706 24.716 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.027 4.027 18 N -0.327 5.327 19 C 0.346 3.654 20 O -0.407 6.407 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.091 4.091 25 C -0.086 4.086 26 C -0.191 4.191 27 C -0.045 4.045 28 N -0.175 5.175 29 C -0.002 4.002 30 C -0.052 4.052 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.178 0.822 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.542 -0.788 24.053 26.274 hybrid contribution 0.369 -0.711 -0.353 0.876 sum -10.173 -1.499 23.700 25.835 Atomic orbital electron populations 1.22223 0.92690 1.03746 1.00631 1.21246 0.95549 0.95118 0.83524 0.90705 1.22282 0.97556 1.01128 0.96952 1.20143 0.90800 0.95333 0.86330 0.92488 1.42798 1.13152 1.55147 1.27866 1.19054 0.87663 1.23529 1.07159 0.89173 1.24669 0.96098 1.00085 0.98206 1.69697 1.15157 1.47270 1.25967 0.86565 0.80389 0.81242 0.80408 1.21050 1.21763 1.20350 1.22658 1.02207 0.99864 0.94544 1.22285 0.79333 1.00824 1.00263 1.48114 1.07781 1.56829 1.20025 1.18250 0.86092 0.78191 0.82903 1.90849 1.15090 1.55559 1.79240 1.20006 0.96531 0.97992 0.96754 1.21182 0.94306 1.00104 0.95380 1.20893 1.00113 0.95560 0.95500 1.18951 0.96255 0.97524 0.96408 1.21530 0.98966 0.94596 0.93481 1.21960 0.97095 0.98173 1.01866 1.23011 0.93168 0.97586 0.90721 1.68031 1.31265 1.08568 1.09644 1.18741 0.92368 0.93696 0.95392 1.21129 0.98603 0.93198 0.92252 0.91268 0.93732 0.91088 0.90372 0.91830 0.80620 0.93033 0.90049 0.92253 0.90980 0.89340 0.84224 0.84517 0.84124 0.84339 0.82220 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.58 37.16 0.28 -1.56 16 2 C 0.15 2.01 3.48 -67.81 -0.24 1.77 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.16 4.81 -26.83 -0.13 -2.29 16 5 C 0.18 3.29 2.73 -67.89 -0.19 3.11 16 6 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 7 N -0.75 -17.05 4.92 -53.38 -0.26 -17.31 16 8 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 9 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.82 13.97 55.49 0.78 -28.04 16 12 Si 0.88 21.94 27.74 -169.99 -4.71 17.23 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -6.54 6.52 56.52 0.37 -6.18 16 16 C -0.15 -2.41 5.66 -26.61 -0.15 -2.56 16 17 C 0.10 1.16 4.80 -3.71 -0.02 1.15 16 18 N -0.59 -7.85 2.98 -166.56 -0.50 -8.35 16 19 C 0.56 7.78 7.25 -12.32 -0.09 7.69 16 20 O -0.53 -8.57 12.25 5.32 0.07 -8.50 16 21 C -0.11 -1.31 5.20 -105.01 -0.55 -1.85 16 22 C -0.09 -0.88 7.24 -39.57 -0.29 -1.17 16 23 C -0.10 -0.86 9.73 -39.58 -0.39 -1.25 16 24 C -0.09 -0.87 5.75 -106.73 -0.61 -1.48 16 25 C -0.06 -0.43 9.88 -39.21 -0.39 -0.81 16 26 C -0.17 -1.09 10.03 -39.75 -0.40 -1.49 16 27 C 0.13 1.04 11.15 -17.46 -0.19 0.85 16 28 N -0.47 -5.41 10.34 -10.98 -0.11 -5.53 16 29 C 0.12 1.41 6.60 -84.87 -0.56 0.85 16 30 C -0.03 -0.41 9.57 -38.68 -0.37 -0.78 16 31 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.08 6.75 -51.93 -0.35 0.73 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.36 8.27 5.66 -40.82 -0.23 8.03 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.09 0.96 4.59 -51.93 -0.24 0.72 16 42 H 0.14 1.13 6.29 -52.48 -0.33 0.80 16 43 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.15 1.89 8.02 -52.48 -0.42 1.47 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -33.65 371.96 -10.24 -43.89 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.58 Total: 7.58 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -4.52 Total: -6.57 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.10 Total: -59.23 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.07 Total: -8.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.65 -10.24 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044792445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.216 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds