Wall clock time and date at job start Tue Mar 31 2020 22:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.70230 * 2 1 4 4 C 1.52765 * 109.50628 * 239.88015 * 2 1 3 5 5 C 1.53042 * 109.38140 * 185.70866 * 4 2 1 6 6 H 1.09001 * 109.44627 * 301.22888 * 5 4 2 7 7 N 1.46499 * 109.45923 * 181.25988 * 5 4 2 8 8 C 1.36935 * 119.99840 * 154.92914 * 7 5 4 9 9 H 1.08002 * 119.99703 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99946 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99897 * 180.02562 * 10 8 7 12 12 Si 1.86793 * 119.99941 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47176 * 90.00085 * 12 10 8 14 14 H 1.48500 * 109.47219 * 210.00200 * 12 10 8 15 15 H 1.48503 * 109.47419 * 329.99799 * 12 10 8 16 16 C 1.53042 * 109.53681 * 61.23929 * 5 4 2 17 17 C 1.53189 * 109.31364 * 298.63211 * 16 5 4 18 18 N 1.46927 * 108.77487 * 54.64006 * 17 16 5 19 19 C 1.34772 * 120.63251 * 126.36460 * 18 17 16 20 20 O 1.21548 * 119.99979 * 185.71485 * 19 18 17 21 21 C 1.47878 * 120.00146 * 5.72150 * 19 18 17 22 22 C 1.40571 * 119.70996 * 37.87488 * 21 19 18 23 23 C 1.35810 * 120.73761 * 180.26206 * 22 21 19 24 24 C 1.40542 * 119.98097 * 0.03848 * 23 22 21 25 25 C 1.40827 * 121.12611 * 179.97438 * 24 23 22 26 26 C 1.36554 * 118.19911 * 179.97438 * 25 24 23 27 27 C 1.39413 * 119.93359 * 0.02562 * 26 25 24 28 28 N 1.31019 * 121.71959 * 359.97438 * 27 26 25 29 29 C 1.33746 * 121.35077 * 0.03576 * 28 27 26 30 30 C 1.38407 * 119.70472 * 218.15558 * 21 19 18 31 31 H 1.09000 * 109.47013 * 303.56643 * 1 2 3 32 32 H 1.09004 * 109.47078 * 63.56432 * 1 2 3 33 33 H 1.08997 * 109.47286 * 183.56697 * 1 2 3 34 34 H 1.08997 * 109.56208 * 65.67137 * 4 2 1 35 35 H 1.09004 * 109.38703 * 305.63423 * 4 2 1 36 36 H 0.97005 * 119.99970 * 334.93530 * 7 5 4 37 37 H 0.97003 * 120.00090 * 180.02562 * 11 10 8 38 38 H 1.08998 * 109.49183 * 178.68623 * 16 5 4 39 39 H 1.08999 * 109.49900 * 58.58841 * 16 5 4 40 40 H 1.08998 * 109.59043 * 294.85272 * 17 16 5 41 41 H 1.08998 * 109.58653 * 174.42357 * 17 16 5 42 42 H 1.08007 * 119.62625 * 0.26074 * 22 21 19 43 43 H 1.08007 * 120.00448 * 180.02562 * 23 22 21 44 44 H 1.08005 * 120.89665 * 0.02562 * 25 24 23 45 45 H 1.07998 * 120.02705 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.13882 * 179.97438 * 27 26 25 47 47 H 1.08007 * 120.23586 * 359.69679 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1727 6 1 4.0055 0.1475 -1.0995 7 7 4.0577 -1.5123 -2.3804 8 6 5.3419 -1.2971 -2.8044 9 1 5.9907 -0.6368 -2.2482 10 6 5.8097 -1.9278 -3.9491 11 7 7.0441 -1.7213 -4.3564 12 14 4.6873 -3.0693 -4.9115 13 1 3.9535 -2.2900 -5.9409 14 1 5.5005 -4.1210 -5.5733 15 1 3.7155 -3.7046 -3.9856 16 6 3.9522 -1.6688 0.0581 17 6 3.4645 -0.9520 1.3211 18 7 2.0226 -0.6996 1.1945 19 6 1.1674 -1.1069 2.1532 20 8 -0.0310 -0.9858 1.9900 21 6 1.6870 -1.7012 3.4036 22 6 2.8596 -1.1877 3.9843 23 6 3.3581 -1.7210 5.1295 24 6 2.7006 -2.7990 5.7466 25 6 3.1966 -3.3708 6.9342 26 6 2.5099 -4.4157 7.4831 27 6 1.3518 -4.8874 6.8668 28 7 0.8929 -4.3533 5.7619 29 6 1.5178 -3.3279 5.1730 30 6 1.0175 -2.7620 3.9887 31 1 -0.3633 0.5682 0.8563 32 1 -0.3633 0.4575 -0.9202 33 1 -0.3634 -1.0256 0.0639 34 1 1.7632 -0.1566 -2.1349 35 1 1.5963 -1.7170 -1.2942 36 1 3.4750 -2.1057 -2.8799 37 1 7.3710 -2.1617 -5.1565 38 1 5.0362 -1.7762 0.0965 39 1 3.4904 -2.6543 -0.0022 40 1 3.9929 -0.0050 1.4309 41 1 3.6504 -1.5798 2.1924 42 1 3.3698 -0.3598 3.5144 43 1 4.2598 -1.3169 5.5657 44 1 4.0953 -2.9925 7.3986 45 1 2.8641 -4.8767 8.3932 46 1 0.8189 -5.7148 7.3118 47 1 0.1168 -3.1519 3.5379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044792445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:35 Heat of formation + Delta-G solvation = 37.249738 kcal Electronic energy + Delta-G solvation = -29104.115747 eV Core-core repulsion = 25251.963246 eV Total energy + Delta-G solvation = -3852.152502 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.18879 -41.31783 -38.94403 -37.91533 -36.33576 -34.54706 -34.11354 -33.76652 -31.77374 -31.22497 -31.09387 -28.49218 -26.26192 -25.73908 -25.03010 -24.12404 -23.44215 -22.75650 -21.79609 -20.84408 -19.65690 -19.17102 -18.09345 -17.89785 -17.10133 -16.94116 -16.73595 -16.49614 -15.92964 -15.59454 -15.45336 -15.38054 -15.13959 -15.09583 -14.69377 -14.57482 -14.34670 -14.11071 -13.91661 -13.77399 -13.37712 -13.26229 -13.04770 -12.96057 -12.90196 -12.65513 -12.56214 -12.34255 -12.14918 -12.03441 -11.92872 -11.77625 -11.56306 -11.38011 -10.94316 -10.51605 -10.26032 -9.79873 -9.66075 -9.32877 -9.28848 -8.01600 -5.34060 -0.73418 -0.35271 0.88531 1.37823 1.38809 1.43683 1.45994 1.78228 2.14483 2.48062 3.06267 3.16846 3.30009 3.44048 3.50677 3.56819 3.77346 3.82065 3.94977 3.98780 4.03838 4.04712 4.07455 4.20356 4.30781 4.31653 4.52685 4.57006 4.57440 4.62009 4.71780 4.73685 4.81433 4.89530 4.89888 4.97003 5.02687 5.09068 5.11481 5.16630 5.25130 5.31342 5.39396 5.45707 5.51586 5.66670 5.78205 5.79023 6.22783 6.33015 6.90898 7.04642 7.08341 7.85270 8.03083 9.19701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.002779 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.738077 B =10074.213921 C =10969.360411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.151 3.849 3 H 0.094 0.906 4 C -0.130 4.130 5 C 0.177 3.823 6 H 0.057 0.943 7 N -0.753 5.753 8 C -0.221 4.221 9 H 0.065 0.935 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.280 1.280 14 H -0.298 1.298 15 H -0.259 1.259 16 C -0.144 4.144 17 C 0.104 3.896 18 N -0.594 5.594 19 C 0.556 3.444 20 O -0.559 6.559 21 C -0.116 4.116 22 C -0.104 4.104 23 C -0.084 4.084 24 C -0.104 4.104 25 C -0.058 4.058 26 C -0.165 4.165 27 C 0.126 3.874 28 N -0.513 5.513 29 C 0.095 3.905 30 C -0.057 4.057 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.159 0.841 43 H 0.176 0.824 44 H 0.178 0.822 45 H 0.178 0.822 46 H 0.186 0.814 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 -0.668 27.621 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.112 0.888 4 C -0.169 4.169 5 C 0.069 3.931 6 H 0.075 0.925 7 N -0.396 5.396 8 C -0.352 4.352 9 H 0.083 0.917 10 C -0.254 4.254 11 N -0.633 5.633 12 Si 0.776 3.224 13 H -0.206 1.206 14 H -0.225 1.225 15 H -0.184 1.184 16 C -0.184 4.184 17 C -0.018 4.018 18 N -0.326 5.326 19 C 0.345 3.655 20 O -0.439 6.439 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.107 4.107 25 C -0.083 4.083 26 C -0.184 4.184 27 C -0.047 4.047 28 N -0.222 5.222 29 C -0.025 4.025 30 C -0.077 4.077 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.194 0.806 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.176 0.824 43 H 0.193 0.807 44 H 0.196 0.804 45 H 0.195 0.805 46 H 0.203 0.797 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.213 -0.740 27.005 28.882 hybrid contribution 0.242 -0.758 -1.047 1.315 sum -9.971 -1.498 25.959 27.848 Atomic orbital electron populations 1.22066 0.92686 1.02394 1.01065 1.21249 0.95460 0.95761 0.82754 0.88782 1.22159 0.95408 1.00997 0.98298 1.20401 0.92376 0.95057 0.85257 0.92533 1.42875 1.11621 1.55546 1.29520 1.19042 0.88820 1.21354 1.05986 0.91675 1.25398 0.97543 1.02596 0.99873 1.69859 1.17312 1.49342 1.26833 0.85514 0.78661 0.79068 0.79121 1.20611 1.22542 1.18410 1.22466 1.01256 0.99252 0.95469 1.22322 0.78694 1.02021 0.98757 1.48136 1.08121 1.56566 1.19765 1.18583 0.85749 0.77625 0.83555 1.90832 1.16401 1.56696 1.80019 1.19914 0.97790 0.98190 0.96148 1.21337 0.93673 1.00931 0.96289 1.21326 1.00450 0.94109 0.94333 1.19273 0.95680 0.98122 0.97581 1.22006 0.99888 0.94195 0.92229 1.22393 0.95842 0.97576 1.02627 1.23652 0.93852 0.97583 0.89626 1.68007 1.32876 1.09704 1.11615 1.18860 0.93687 0.94428 0.95506 1.21043 0.98607 0.94490 0.93563 0.91906 0.92248 0.93228 0.89964 0.92823 0.80574 0.93476 0.91395 0.93625 0.88413 0.87482 0.82398 0.80685 0.80440 0.80492 0.79683 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 7.58 71.98 0.55 -2.79 16 2 C 0.15 3.88 3.48 44.83 0.16 4.04 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.13 -3.86 4.81 30.53 0.15 -3.72 16 5 C 0.18 6.19 2.73 45.02 0.12 6.31 16 6 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 7 N -0.75 -33.96 4.92 -322.81 -1.59 -35.55 16 8 C -0.22 -12.11 10.41 84.03 0.87 -11.24 16 9 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 10 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 11 N -0.98 -62.06 13.97 21.65 0.30 -61.75 16 12 Si 0.95 45.66 27.74 68.60 1.90 47.56 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 15 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 16 C -0.14 -4.45 5.66 30.67 0.17 -4.27 16 17 C 0.10 2.33 4.80 86.36 0.41 2.75 16 18 N -0.59 -15.04 2.98 -799.16 -2.38 -17.42 16 19 C 0.56 15.56 7.25 86.80 0.63 16.19 16 20 O -0.56 -18.75 12.25 -3.87 -0.05 -18.79 16 21 C -0.12 -2.80 5.20 -20.12 -0.10 -2.90 16 22 C -0.10 -1.78 7.24 22.28 0.16 -1.62 16 23 C -0.08 -1.14 9.73 22.27 0.22 -0.92 16 24 C -0.10 -1.79 5.75 -21.23 -0.12 -1.91 16 25 C -0.06 -0.59 9.88 22.51 0.22 -0.37 16 26 C -0.17 -1.49 10.03 22.16 0.22 -1.27 16 27 C 0.13 1.81 11.15 85.10 0.95 2.76 16 28 N -0.51 -11.95 10.34 -188.66 -1.95 -13.90 16 29 C 0.10 2.27 6.60 40.25 0.27 2.53 16 30 C -0.06 -1.52 9.57 22.85 0.22 -1.31 16 31 H 0.06 1.77 6.75 -2.39 -0.02 1.76 16 32 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.05 1.54 6.75 -2.39 -0.02 1.52 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.36 16.17 5.66 -92.70 -0.52 15.65 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 41 H 0.11 2.08 4.59 -2.39 -0.01 2.07 16 42 H 0.16 2.03 6.29 -2.91 -0.02 2.01 16 43 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 44 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 45 H 0.18 0.21 8.06 -2.91 -0.02 0.18 16 46 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.12 3.59 8.02 -2.91 -0.02 3.57 16 Total: -1.00 -77.11 371.96 2.21 -74.90 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.41 Total: 25.87 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.56 Total: -0.91 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.62 Total: -128.63 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.90 Total: 47.56 kcal Total: -77.11 2.21 -74.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044792445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.153 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds