Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70217 * 2 1 4 4 C 1.52764 * 109.42618 * 120.16772 * 2 1 3 5 5 C 1.53039 * 109.38491 * 65.42249 * 4 2 1 6 6 H 1.09001 * 109.44890 * 301.22514 * 5 4 2 7 7 N 1.46497 * 109.46094 * 181.25591 * 5 4 2 8 8 C 1.36939 * 120.00182 * 154.93087 * 7 5 4 9 9 H 1.07998 * 119.99661 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00112 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99899 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00039 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46969 * 90.00122 * 12 10 8 14 14 H 1.48499 * 109.47044 * 210.00263 * 12 10 8 15 15 H 1.48504 * 109.46898 * 330.00240 * 12 10 8 16 16 C 1.53049 * 109.53783 * 61.23785 * 5 4 2 17 17 C 1.53187 * 109.30977 * 298.63530 * 16 5 4 18 18 N 1.46925 * 108.77900 * 54.63631 * 17 16 5 19 19 C 1.34776 * 120.62933 * 126.36854 * 18 17 16 20 20 O 1.21551 * 119.99828 * 185.84826 * 19 18 17 21 21 C 1.47878 * 120.00248 * 5.84949 * 19 18 17 22 22 C 1.40576 * 119.70855 * 41.90314 * 21 19 18 23 23 C 1.35809 * 120.73522 * 180.25856 * 22 21 19 24 24 C 1.40551 * 119.98360 * 359.54406 * 23 22 21 25 25 C 1.40824 * 121.13395 * 180.23544 * 24 23 22 26 26 C 1.36552 * 118.19892 * 180.02562 * 25 24 23 27 27 C 1.39415 * 119.93730 * 359.97438 * 26 25 24 28 28 N 1.31022 * 121.71939 * 0.02562 * 27 26 25 29 29 C 1.33751 * 121.34598 * 359.97438 * 28 27 26 30 30 C 1.38406 * 119.70612 * 221.72648 * 21 19 18 31 31 H 1.08996 * 109.47749 * 180.35108 * 1 2 3 32 32 H 1.09000 * 109.46870 * 300.35950 * 1 2 3 33 33 H 1.09003 * 109.46582 * 60.34878 * 1 2 3 34 34 H 1.08992 * 109.56524 * 305.38146 * 4 2 1 35 35 H 1.08999 * 109.35526 * 185.33263 * 4 2 1 36 36 H 0.97006 * 119.99998 * 334.93253 * 7 5 4 37 37 H 0.96999 * 119.99806 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49229 * 178.68411 * 16 5 4 39 39 H 1.08994 * 109.52026 * 58.60038 * 16 5 4 40 40 H 1.08998 * 109.58888 * 294.84270 * 17 16 5 41 41 H 1.09003 * 109.70222 * 174.49425 * 17 16 5 42 42 H 1.07995 * 119.63102 * 0.05407 * 22 21 19 43 43 H 1.08004 * 120.00778 * 179.81859 * 23 22 21 44 44 H 1.08003 * 120.89691 * 0.04101 * 25 24 23 45 45 H 1.07994 * 120.02936 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.14465 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.23850 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0381 -0.7240 1.2455 5 6 1.6408 -2.2001 1.1726 6 1 0.5563 -2.2808 1.0994 7 7 2.1012 -2.8897 2.3804 8 6 1.4656 -4.0261 2.8043 9 1 0.6251 -4.4142 2.2480 10 6 1.9014 -4.6793 3.9490 11 7 1.2902 -5.7712 4.3567 12 14 3.3556 -4.0083 4.9107 13 1 2.8704 -3.0542 5.9401 14 1 4.0709 -5.1289 5.5724 15 1 4.2814 -3.3085 3.9842 16 6 2.2842 -2.8431 -0.0582 17 6 1.7740 -2.1421 -1.3211 18 7 2.0225 -0.6996 -1.1945 19 6 2.6945 -0.0318 -2.1532 20 8 2.9866 1.1366 -1.9890 21 6 3.0763 -0.7206 -3.4048 22 6 2.1616 -1.5849 -4.0313 23 6 2.4923 -2.2322 -5.1785 24 6 3.7576 -2.0336 -5.7574 25 6 4.1240 -2.6884 -6.9490 26 6 5.3686 -2.4522 -7.4586 27 6 6.2363 -1.5820 -6.8003 28 7 5.8925 -0.9742 -5.6917 29 6 4.6886 -1.1618 -5.1400 30 6 4.3296 -0.5056 -3.9511 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8868 33 1 -0.3632 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1239 -0.6414 1.2937 36 1 2.8563 -2.5413 2.8798 37 1 1.5946 -6.2274 5.1568 38 1 2.0198 -3.8999 -0.0966 39 1 3.3677 -2.7411 0.0020 40 1 0.7043 -2.3203 -1.4311 41 1 2.3003 -2.5284 -2.1939 42 1 1.1863 -1.7385 -3.5936 43 1 1.7815 -2.8959 -5.6484 44 1 3.4390 -3.3591 -7.4465 45 1 5.6802 -2.9385 -8.3712 46 1 7.2176 -1.4041 -7.2149 47 1 5.0271 0.1616 -3.4664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044792447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = 41.195061 kcal Electronic energy + Delta-G solvation = -29077.804310 eV Core-core repulsion = 25225.822891 eV Total energy + Delta-G solvation = -3851.981419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.31223 -40.28384 -37.95133 -36.98229 -34.75142 -33.84127 -32.78674 -31.89482 -30.76373 -30.39713 -29.80600 -27.49230 -25.42957 -24.47330 -23.93618 -22.95969 -22.51885 -21.75368 -20.77939 -19.08975 -18.48989 -17.64617 -17.26921 -17.16043 -16.52769 -15.75623 -15.27174 -15.05252 -14.84023 -14.64819 -14.48039 -14.15969 -14.06258 -13.75627 -13.65549 -13.45773 -13.41238 -12.96586 -12.86862 -12.62114 -12.24936 -12.16483 -12.01448 -11.87323 -11.69007 -11.43080 -11.05229 -10.96760 -10.91296 -10.86695 -10.57344 -10.24701 -9.96869 -9.82641 -9.76241 -9.62216 -9.10390 -8.93869 -8.67996 -8.55973 -7.31688 -5.81235 -3.16965 -0.03479 0.33106 1.58048 2.24211 2.77346 3.02130 3.35604 3.39182 3.43675 3.76032 3.91848 4.18258 4.28501 4.40573 4.50290 4.55984 4.62465 4.74295 4.83528 4.97261 5.05191 5.06814 5.12235 5.19205 5.36307 5.39905 5.48142 5.50678 5.52389 5.55427 5.64974 5.69257 5.70768 5.77087 5.89902 5.95888 5.98952 6.02133 6.12889 6.16722 6.21979 6.33339 6.35681 6.40406 6.53191 6.77218 6.91255 7.38020 7.54858 7.94089 8.07182 8.37932 9.16151 9.89184 10.08883 11.36945 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.002765 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.636378 B =10124.407385 C =10900.656602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.098 0.902 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.061 0.939 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.098 3.902 18 N -0.593 5.593 19 C 0.559 3.441 20 O -0.538 6.538 21 C -0.104 4.104 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.090 4.090 25 C -0.059 4.059 26 C -0.171 4.171 27 C 0.129 3.871 28 N -0.467 5.467 29 C 0.120 3.880 30 C -0.034 4.034 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.161 0.839 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 8.127 -24.613 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.079 0.921 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.108 0.892 10 C -0.191 4.191 11 N -0.581 5.581 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.193 4.193 17 C -0.025 4.025 18 N -0.325 5.325 19 C 0.347 3.653 20 O -0.416 6.416 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.119 4.119 24 C -0.092 4.092 25 C -0.085 4.085 26 C -0.191 4.191 27 C -0.044 4.044 28 N -0.175 5.175 29 C -0.001 4.001 30 C -0.053 4.053 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.178 0.822 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.545 9.137 -23.929 25.858 hybrid contribution 0.554 -0.475 0.312 0.794 sum 4.099 8.662 -23.617 25.487 Atomic orbital electron populations 1.22165 0.94685 1.03012 1.02106 1.21118 0.94182 0.97161 0.83608 0.88432 1.22188 1.01417 0.97328 0.96797 1.20177 0.97391 0.88775 0.86258 0.92143 1.42808 1.37771 1.30537 1.27876 1.19046 1.11288 0.99884 1.07131 0.89189 1.24667 0.98937 0.97236 0.98212 1.69696 1.42836 1.19605 1.25960 0.86569 0.83483 0.78171 0.80405 1.21063 1.21776 1.20346 1.22654 1.01110 1.00935 0.94575 1.22162 1.01135 0.79071 1.00091 1.48148 1.54669 1.09598 1.20114 1.18250 0.77779 0.86243 0.83012 1.90779 1.54645 1.16423 1.79787 1.19888 0.95299 0.99260 0.96488 1.21090 0.99725 0.94711 0.95209 1.20885 0.95175 1.00119 0.95765 1.18950 0.95619 0.98254 0.96349 1.21526 0.96552 0.96801 0.93665 1.21960 0.95014 1.00244 1.01874 1.23017 0.99584 0.91451 0.90393 1.68037 1.16416 1.22330 1.10727 1.18731 0.90042 0.96010 0.95320 1.21124 0.95202 0.96403 0.92591 0.91431 0.91133 0.92761 0.90304 0.91898 0.80650 0.93042 0.90086 0.92271 0.91046 0.89674 0.84398 0.84492 0.84116 0.84330 0.82206 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.02 37.16 0.34 -1.56 16 2 C 0.14 1.93 3.20 -67.82 -0.22 1.71 16 3 H 0.10 1.40 7.00 -51.93 -0.36 1.03 16 4 C -0.14 -2.12 4.99 -26.83 -0.13 -2.26 16 5 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 6 H 0.06 1.09 6.43 -51.93 -0.33 0.76 16 7 N -0.75 -16.96 4.92 -53.38 -0.26 -17.23 16 8 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 9 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 11 N -0.93 -28.75 13.97 55.49 0.78 -27.98 16 12 Si 0.88 21.90 27.74 -169.99 -4.71 17.19 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 15 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 16 C -0.15 -2.42 5.66 -26.61 -0.15 -2.57 16 17 C 0.10 1.21 4.51 -3.71 -0.02 1.19 16 18 N -0.59 -7.92 2.68 -166.57 -0.45 -8.36 16 19 C 0.56 8.08 7.28 -12.31 -0.09 7.99 16 20 O -0.54 -9.41 16.35 5.32 0.09 -9.33 16 21 C -0.10 -1.29 5.06 -105.01 -0.53 -1.82 16 22 C -0.09 -0.86 7.28 -39.57 -0.29 -1.15 16 23 C -0.10 -0.85 9.74 -39.58 -0.39 -1.23 16 24 C -0.09 -0.87 5.75 -106.72 -0.61 -1.49 16 25 C -0.06 -0.42 9.89 -39.21 -0.39 -0.81 16 26 C -0.17 -1.09 10.03 -39.75 -0.40 -1.49 16 27 C 0.13 1.05 11.15 -17.46 -0.19 0.86 16 28 N -0.47 -5.45 10.34 -10.98 -0.11 -5.57 16 29 C 0.12 1.43 6.60 -84.87 -0.56 0.87 16 30 C -0.03 -0.43 9.59 -38.68 -0.37 -0.80 16 31 H 0.07 0.81 5.74 -51.93 -0.30 0.51 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.77 7.50 -51.93 -0.39 0.38 16 41 H 0.09 0.94 4.82 -51.93 -0.25 0.69 16 42 H 0.14 1.11 6.72 -52.49 -0.35 0.76 16 43 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.16 16 45 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 46 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -34.19 374.28 -9.92 -44.11 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.46 Total: 7.69 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -4.43 Total: -6.17 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.05 Total: -59.14 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.19 -9.92 -44.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044792447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.305 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds