Wall clock time and date at job start Tue Mar 31 2020 22:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70217 * 2 1 4 4 C 1.52764 * 109.42618 * 120.16772 * 2 1 3 5 5 C 1.53039 * 109.38491 * 65.42249 * 4 2 1 6 6 H 1.09001 * 109.44890 * 301.22514 * 5 4 2 7 7 N 1.46497 * 109.46094 * 181.25591 * 5 4 2 8 8 C 1.36939 * 120.00182 * 154.93087 * 7 5 4 9 9 H 1.07998 * 119.99661 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00112 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99899 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00039 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46969 * 90.00122 * 12 10 8 14 14 H 1.48499 * 109.47044 * 210.00263 * 12 10 8 15 15 H 1.48504 * 109.46898 * 330.00240 * 12 10 8 16 16 C 1.53049 * 109.53783 * 61.23785 * 5 4 2 17 17 C 1.53187 * 109.30977 * 298.63530 * 16 5 4 18 18 N 1.46925 * 108.77900 * 54.63631 * 17 16 5 19 19 C 1.34776 * 120.62933 * 126.36854 * 18 17 16 20 20 O 1.21551 * 119.99828 * 185.84826 * 19 18 17 21 21 C 1.47878 * 120.00248 * 5.84949 * 19 18 17 22 22 C 1.40576 * 119.70855 * 41.90314 * 21 19 18 23 23 C 1.35809 * 120.73522 * 180.25856 * 22 21 19 24 24 C 1.40551 * 119.98360 * 359.54406 * 23 22 21 25 25 C 1.40824 * 121.13395 * 180.23544 * 24 23 22 26 26 C 1.36552 * 118.19892 * 180.02562 * 25 24 23 27 27 C 1.39415 * 119.93730 * 359.97438 * 26 25 24 28 28 N 1.31022 * 121.71939 * 0.02562 * 27 26 25 29 29 C 1.33751 * 121.34598 * 359.97438 * 28 27 26 30 30 C 1.38406 * 119.70612 * 221.72648 * 21 19 18 31 31 H 1.08996 * 109.47749 * 180.35108 * 1 2 3 32 32 H 1.09000 * 109.46870 * 300.35950 * 1 2 3 33 33 H 1.09003 * 109.46582 * 60.34878 * 1 2 3 34 34 H 1.08992 * 109.56524 * 305.38146 * 4 2 1 35 35 H 1.08999 * 109.35526 * 185.33263 * 4 2 1 36 36 H 0.97006 * 119.99998 * 334.93253 * 7 5 4 37 37 H 0.96999 * 119.99806 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49229 * 178.68411 * 16 5 4 39 39 H 1.08994 * 109.52026 * 58.60038 * 16 5 4 40 40 H 1.08998 * 109.58888 * 294.84270 * 17 16 5 41 41 H 1.09003 * 109.70222 * 174.49425 * 17 16 5 42 42 H 1.07995 * 119.63102 * 0.05407 * 22 21 19 43 43 H 1.08004 * 120.00778 * 179.81859 * 23 22 21 44 44 H 1.08003 * 120.89691 * 0.04101 * 25 24 23 45 45 H 1.07994 * 120.02936 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.14465 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.23850 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0381 -0.7240 1.2455 5 6 1.6408 -2.2001 1.1726 6 1 0.5563 -2.2808 1.0994 7 7 2.1012 -2.8897 2.3804 8 6 1.4656 -4.0261 2.8043 9 1 0.6251 -4.4142 2.2480 10 6 1.9014 -4.6793 3.9490 11 7 1.2902 -5.7712 4.3567 12 14 3.3556 -4.0083 4.9107 13 1 2.8704 -3.0542 5.9401 14 1 4.0709 -5.1289 5.5724 15 1 4.2814 -3.3085 3.9842 16 6 2.2842 -2.8431 -0.0582 17 6 1.7740 -2.1421 -1.3211 18 7 2.0225 -0.6996 -1.1945 19 6 2.6945 -0.0318 -2.1532 20 8 2.9866 1.1366 -1.9890 21 6 3.0763 -0.7206 -3.4048 22 6 2.1616 -1.5849 -4.0313 23 6 2.4923 -2.2322 -5.1785 24 6 3.7576 -2.0336 -5.7574 25 6 4.1240 -2.6884 -6.9490 26 6 5.3686 -2.4522 -7.4586 27 6 6.2363 -1.5820 -6.8003 28 7 5.8925 -0.9742 -5.6917 29 6 4.6886 -1.1618 -5.1400 30 6 4.3296 -0.5056 -3.9511 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8868 33 1 -0.3632 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1239 -0.6414 1.2937 36 1 2.8563 -2.5413 2.8798 37 1 1.5946 -6.2274 5.1568 38 1 2.0198 -3.8999 -0.0966 39 1 3.3677 -2.7411 0.0020 40 1 0.7043 -2.3203 -1.4311 41 1 2.3003 -2.5284 -2.1939 42 1 1.1863 -1.7385 -3.5936 43 1 1.7815 -2.8959 -5.6484 44 1 3.4390 -3.3591 -7.4465 45 1 5.6802 -2.9385 -8.3712 46 1 7.2176 -1.4041 -7.2149 47 1 5.0271 0.1616 -3.4664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044792447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:39 Heat of formation + Delta-G solvation = 19.529600 kcal Electronic energy + Delta-G solvation = -29078.743795 eV Core-core repulsion = 25225.822891 eV Total energy + Delta-G solvation = -3852.920904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.13451 -41.26125 -39.16245 -37.82528 -36.39957 -34.51097 -34.07628 -33.54313 -31.75659 -31.28094 -31.08872 -28.71175 -26.36322 -25.66015 -25.00068 -24.21932 -23.40401 -22.88855 -22.03558 -20.32134 -19.69029 -19.05307 -18.18708 -17.91315 -17.56781 -16.81203 -16.71462 -16.25471 -15.87473 -15.55936 -15.43955 -15.27966 -15.24286 -14.89598 -14.84239 -14.61478 -14.41587 -14.12905 -14.05364 -13.90469 -13.45931 -13.15004 -13.01415 -12.98328 -12.86260 -12.66619 -12.46844 -12.37205 -12.18658 -12.05298 -11.94017 -11.78274 -11.57345 -11.18744 -11.05381 -10.89626 -10.49508 -9.86144 -9.73229 -9.33820 -9.29042 -8.01066 -5.33374 -0.74081 -0.35581 0.87846 1.38068 1.38812 1.40347 1.46046 1.75402 2.09368 2.48370 3.05289 3.14897 3.30548 3.42572 3.52208 3.56050 3.77586 3.81678 3.93150 3.97967 4.04123 4.05472 4.06040 4.21515 4.26356 4.31794 4.50864 4.52871 4.56881 4.61242 4.70558 4.74202 4.76976 4.86912 4.89171 5.00211 5.03023 5.04274 5.08966 5.15735 5.23404 5.30381 5.30995 5.47576 5.51961 5.59264 5.77615 5.79852 6.23295 6.28070 6.90602 6.96141 7.08919 7.85956 8.03606 9.20205 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014198 B = 0.002765 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.636378 B =10124.407385 C =10900.656602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.090 0.910 4 C -0.129 4.129 5 C 0.178 3.822 6 H 0.062 0.938 7 N -0.754 5.754 8 C -0.220 4.220 9 H 0.066 0.934 10 C -0.062 4.062 11 N -0.982 5.982 12 Si 0.947 3.053 13 H -0.280 1.280 14 H -0.299 1.299 15 H -0.260 1.260 16 C -0.145 4.145 17 C 0.107 3.893 18 N -0.590 5.590 19 C 0.558 3.442 20 O -0.578 6.578 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.104 4.104 25 C -0.057 4.057 26 C -0.165 4.165 27 C 0.126 3.874 28 N -0.514 5.514 29 C 0.096 3.904 30 C -0.059 4.059 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.361 0.639 37 H 0.256 0.744 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.157 0.843 43 H 0.177 0.823 44 H 0.179 0.821 45 H 0.178 0.822 46 H 0.186 0.814 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.738 7.694 -27.727 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.108 0.892 4 C -0.168 4.168 5 C 0.070 3.930 6 H 0.080 0.920 7 N -0.396 5.396 8 C -0.351 4.351 9 H 0.084 0.916 10 C -0.254 4.254 11 N -0.633 5.633 12 Si 0.776 3.224 13 H -0.206 1.206 14 H -0.226 1.226 15 H -0.185 1.185 16 C -0.185 4.185 17 C -0.015 4.015 18 N -0.321 5.321 19 C 0.348 3.652 20 O -0.459 6.459 21 C -0.117 4.117 22 C -0.120 4.120 23 C -0.100 4.100 24 C -0.106 4.106 25 C -0.082 4.082 26 C -0.184 4.184 27 C -0.047 4.047 28 N -0.223 5.223 29 C -0.024 4.024 30 C -0.079 4.079 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.194 0.806 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.175 0.825 43 H 0.195 0.805 44 H 0.197 0.803 45 H 0.196 0.804 46 H 0.203 0.797 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.227 8.738 -27.086 28.643 hybrid contribution 0.699 -0.347 1.076 1.329 sum 3.926 8.391 -26.010 27.611 Atomic orbital electron populations 1.22111 0.92759 1.03259 1.03125 1.21078 0.95576 0.96409 0.82808 0.89237 1.22080 1.00819 0.95765 0.98163 1.20422 0.97545 0.89886 0.85106 0.91964 1.42889 1.37543 1.29636 1.29515 1.19034 1.09836 1.00255 1.05928 0.91612 1.25386 1.02145 0.97966 0.99885 1.69856 1.45074 1.21574 1.26824 0.85529 0.80488 0.77296 0.79136 1.20632 1.22586 1.18463 1.22474 1.00120 1.00412 0.95529 1.22192 1.02749 0.77925 0.98665 1.48177 1.54208 1.09926 1.19783 1.18632 0.76970 0.85864 0.83763 1.90748 1.56136 1.18247 1.80736 1.19789 0.95812 1.00293 0.95843 1.21251 0.99910 0.94749 0.96055 1.21328 0.95025 0.99005 0.94600 1.19276 0.95762 0.98124 0.97474 1.22008 0.97431 0.96359 0.92419 1.22396 0.94347 0.99050 1.02622 1.23660 1.01035 0.90669 0.89293 1.68010 1.17007 1.24499 1.12765 1.18838 0.91081 0.97044 0.95413 1.21035 0.95511 0.97469 0.93915 0.91434 0.90279 0.91687 0.89832 0.92953 0.80635 0.93499 0.91356 0.93669 0.88497 0.87825 0.82509 0.80525 0.80341 0.80448 0.79680 0.86208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.02 71.98 0.65 -2.68 16 2 C 0.14 3.80 3.20 44.83 0.14 3.94 16 3 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 4 C -0.13 -3.89 4.99 30.53 0.15 -3.74 16 5 C 0.18 6.20 2.53 45.02 0.11 6.32 16 6 H 0.06 2.18 6.43 -2.39 -0.02 2.16 16 7 N -0.75 -33.87 4.92 -322.81 -1.59 -35.46 16 8 C -0.22 -11.97 10.41 84.03 0.87 -11.10 16 9 H 0.07 3.86 8.06 -2.91 -0.02 3.84 16 10 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 11 N -0.98 -61.90 13.97 21.65 0.30 -61.59 16 12 Si 0.95 45.63 27.74 68.60 1.90 47.53 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 15 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 16 C -0.14 -4.51 5.66 30.67 0.17 -4.33 16 17 C 0.11 2.44 4.51 86.36 0.39 2.82 16 18 N -0.59 -15.27 2.68 -799.18 -2.15 -17.42 16 19 C 0.56 16.31 7.28 86.80 0.63 16.95 16 20 O -0.58 -21.03 16.35 -3.88 -0.06 -21.10 16 21 C -0.11 -2.79 5.06 -20.11 -0.10 -2.89 16 22 C -0.10 -1.74 7.28 22.28 0.16 -1.58 16 23 C -0.08 -1.09 9.74 22.27 0.22 -0.87 16 24 C -0.10 -1.78 5.75 -21.23 -0.12 -1.90 16 25 C -0.06 -0.57 9.89 22.51 0.22 -0.35 16 26 C -0.16 -1.47 10.03 22.16 0.22 -1.25 16 27 C 0.13 1.82 11.15 85.10 0.95 2.77 16 28 N -0.51 -12.06 10.34 -188.65 -1.95 -14.01 16 29 C 0.10 2.31 6.60 40.25 0.27 2.58 16 30 C -0.06 -1.62 9.59 22.85 0.22 -1.40 16 31 H 0.07 1.46 5.74 -2.39 -0.01 1.45 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.36 16.14 5.66 -92.70 -0.52 15.62 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.72 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.79 7.50 -2.39 -0.02 1.77 16 41 H 0.10 2.06 4.82 -2.39 -0.01 2.05 16 42 H 0.16 2.01 6.72 -2.91 -0.02 1.99 16 43 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 44 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 45 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 46 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 47 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -78.51 374.28 2.50 -76.01 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.41 Total: 25.89 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.63 Total: 0.15 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -5.38 Total: -128.48 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.53 kcal Total: -78.51 2.50 -76.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044792447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.537 kcal (2) G-P(sol) polarization free energy of solvation -78.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds