Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58376 * 2 1 4 4 C 1.53188 * 109.58521 * 239.71952 * 2 1 3 5 5 C 1.53036 * 109.31288 * 185.57374 * 4 2 1 6 6 H 1.08998 * 109.46213 * 301.36328 * 5 4 2 7 7 N 1.46493 * 109.46335 * 181.38712 * 5 4 2 8 8 C 1.36935 * 120.00407 * 154.97823 * 7 5 4 9 9 H 1.08001 * 119.99915 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00545 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00245 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99528 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.46832 * 90.00492 * 12 10 8 14 14 H 1.48492 * 109.47542 * 330.00629 * 12 10 8 15 15 H 1.48498 * 109.47040 * 210.00025 * 12 10 8 16 16 C 1.53048 * 109.52514 * 61.37142 * 5 4 2 17 17 C 1.53186 * 109.31141 * 298.61662 * 16 5 4 18 18 N 1.46922 * 108.76849 * 54.65517 * 17 16 5 19 19 C 1.34775 * 120.63262 * 126.35915 * 18 17 16 20 20 O 1.21592 * 120.00207 * 185.54805 * 19 18 17 21 21 C 1.47559 * 120.00190 * 5.54602 * 19 18 17 22 22 C 1.38712 * 120.43177 * 50.10778 * 21 19 18 23 23 C 1.38999 * 120.75004 * 180.02562 * 22 21 19 24 24 C 1.36338 * 121.19493 * 359.97438 * 23 22 21 25 25 C 1.40357 * 119.92692 * 0.02562 * 24 23 22 26 26 C 1.40679 * 122.10145 * 179.97438 * 25 24 23 27 27 C 1.36259 * 118.66834 * 179.97438 * 26 25 24 28 28 N 1.32515 * 121.84030 * 359.97438 * 27 26 25 29 29 C 1.31320 * 122.71810 * 0.02562 * 28 27 26 30 30 C 1.40138 * 119.91720 * 359.75130 * 29 28 27 31 31 H 1.08994 * 109.47048 * 183.32353 * 1 2 3 32 32 H 1.09002 * 109.47246 * 303.32556 * 1 2 3 33 33 H 1.09000 * 109.47524 * 63.31930 * 1 2 3 34 34 H 1.09002 * 109.49705 * 65.62838 * 4 2 1 35 35 H 1.08995 * 109.50055 * 305.52911 * 4 2 1 36 36 H 0.97006 * 120.00079 * 334.97585 * 7 5 4 37 37 H 0.97008 * 120.00161 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49328 * 58.58258 * 16 5 4 39 39 H 1.08994 * 109.49631 * 178.67157 * 16 5 4 40 40 H 1.09002 * 109.60181 * 294.86238 * 17 16 5 41 41 H 1.09004 * 109.70333 * 174.50154 * 17 16 5 42 42 H 1.08000 * 119.62185 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.40177 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.04110 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.67081 * 359.97181 * 26 25 24 46 46 H 1.08003 * 119.08802 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.03826 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 6 3.5674 -0.8464 -1.1713 6 1 4.0060 0.1489 -1.0989 7 7 4.0651 -1.5125 -2.3774 8 6 5.3494 -1.2945 -2.7995 9 1 5.9954 -0.6312 -2.2434 10 6 5.8209 -1.9253 -3.9426 11 7 7.0552 -1.7154 -4.3485 12 14 4.7035 -3.0721 -4.9048 13 1 3.9685 -2.2968 -5.9363 14 1 3.7325 -3.7090 -3.9792 15 1 5.5210 -4.1221 -5.5638 16 6 3.9566 -1.6659 0.0613 17 6 3.4650 -0.9486 1.3224 18 7 2.0226 -0.7011 1.1936 19 6 1.1674 -1.1097 2.1517 20 8 -0.0315 -0.9899 1.9880 21 6 1.6859 -1.7027 3.3995 22 6 2.6816 -1.0612 4.1215 23 6 3.1752 -1.6141 5.2973 24 6 2.6981 -2.7983 5.7756 25 6 1.6905 -3.4809 5.0764 26 6 1.1655 -4.7055 5.5278 27 6 0.1880 -5.3078 4.7940 28 7 -0.2766 -4.7718 3.6747 29 6 0.1674 -3.6325 3.1957 30 6 1.1700 -2.9306 3.8783 31 1 -0.3633 -1.0259 0.0596 32 1 -0.3634 0.5646 0.8587 33 1 -0.3634 0.4614 -0.9182 34 1 1.7660 -0.1640 -2.1370 35 1 1.6029 -1.7236 -1.2936 36 1 3.4849 -2.1080 -2.8770 37 1 7.3848 -2.1565 -5.1472 38 1 3.4978 -2.6528 0.0016 39 1 5.0408 -1.7700 0.1014 40 1 3.9903 0.0003 1.4317 41 1 3.6520 -1.5724 2.1965 42 1 3.0782 -0.1219 3.7655 43 1 3.9509 -1.0962 5.8420 44 1 3.0954 -3.2112 6.6911 45 1 1.5298 -5.1592 6.4377 46 1 -0.2197 -6.2483 5.1341 47 1 -0.2422 -3.2353 2.2787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044801019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = 53.619951 kcal Electronic energy + Delta-G solvation = -29642.868161 eV Core-core repulsion = 25791.425525 eV Total energy + Delta-G solvation = -3851.442636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.46678 -40.19419 -37.70914 -37.41084 -34.73535 -33.75010 -32.34159 -32.01873 -31.52938 -30.15390 -29.57418 -27.25303 -25.05534 -24.34144 -23.92321 -23.56839 -22.73257 -21.57534 -20.27433 -19.44004 -18.30880 -17.69040 -17.38461 -17.09453 -16.41190 -15.98368 -15.36560 -15.00851 -14.88518 -14.83521 -14.42280 -14.19779 -14.05745 -13.97985 -13.70274 -13.37666 -13.16147 -12.81880 -12.57719 -12.53901 -12.37974 -12.17180 -12.15483 -11.92725 -11.73473 -11.52697 -11.04374 -10.98728 -10.90203 -10.59936 -10.43774 -10.31313 -9.95154 -9.73251 -9.63675 -9.44869 -9.16676 -8.97286 -8.58896 -8.34924 -7.32955 -5.81909 -3.17866 -0.11628 0.57763 1.40462 2.45177 2.70809 2.95505 3.35198 3.38722 3.43336 3.78182 4.08589 4.20622 4.34802 4.43020 4.51257 4.55383 4.62349 4.76608 4.91517 4.93085 4.97130 5.09163 5.19551 5.27556 5.35221 5.36536 5.42631 5.45386 5.53006 5.59303 5.67259 5.70330 5.77093 5.86618 5.87801 5.97858 6.00335 6.02168 6.20893 6.27840 6.29463 6.32433 6.38905 6.42980 6.62411 6.75055 6.89341 7.33722 7.74443 7.93265 8.03283 8.37142 9.15310 9.88253 10.07820 11.36225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.003084 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.628029 B = 9076.694826 C = 9302.510942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.076 0.924 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.057 0.943 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.277 1.277 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.101 3.899 18 N -0.592 5.592 19 C 0.558 3.442 20 O -0.527 6.527 21 C -0.089 4.089 22 C -0.084 4.084 23 C -0.101 4.101 24 C -0.095 4.095 25 C -0.027 4.027 26 C -0.159 4.159 27 C 0.078 3.922 28 N -0.487 5.487 29 C 0.158 3.842 30 C -0.081 4.081 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.771 -0.091 22.609 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.045 3.955 3 H 0.094 0.906 4 C -0.179 4.179 5 C 0.074 3.926 6 H 0.075 0.925 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.581 5.581 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.203 1.203 15 H -0.217 1.217 16 C -0.192 4.192 17 C -0.022 4.022 18 N -0.324 5.324 19 C 0.345 3.655 20 O -0.406 6.406 21 C -0.094 4.094 22 C -0.103 4.103 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.032 4.032 26 C -0.178 4.178 27 C -0.066 4.066 28 N -0.194 5.194 29 C -0.013 4.013 30 C -0.083 4.083 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.171 0.829 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -11.800 -0.500 22.091 25.050 hybrid contribution 0.287 -0.517 -0.255 0.644 sum -11.513 -1.017 21.836 24.706 Atomic orbital electron populations 1.22227 0.92616 1.03749 1.00751 1.21358 0.95588 0.95128 0.83446 0.90591 1.22354 0.97530 1.01090 0.96911 1.20140 0.90771 0.95356 0.86335 0.92479 1.42792 1.13206 1.54945 1.28000 1.19054 0.87703 1.23456 1.07294 0.89170 1.24665 0.96087 1.00041 0.98187 1.69696 1.15108 1.47162 1.26090 0.86574 0.80372 0.81290 0.80424 1.21023 1.20349 1.21743 1.22646 1.02217 0.99832 0.94515 1.22071 0.79095 1.00936 1.00125 1.48173 1.07847 1.56458 1.19957 1.18162 0.86226 0.78193 0.82883 1.90870 1.14914 1.55714 1.79094 1.20000 0.97546 0.95348 0.96481 1.21444 0.94161 0.99963 0.94712 1.20926 0.99672 0.95742 0.95704 1.21121 0.95537 0.95100 0.99583 1.18121 0.96125 0.94987 0.93942 1.21902 0.98934 0.95333 1.01673 1.22280 0.94049 0.99525 0.90708 1.67538 1.27251 1.11605 1.13045 1.23433 0.90596 0.88982 0.98301 1.18741 0.98486 0.95227 0.95880 0.91074 0.91200 0.93656 0.90350 0.91768 0.80612 0.93020 0.92276 0.90036 0.90993 0.89955 0.84618 0.84708 0.84707 0.84270 0.82890 0.81385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.59 37.16 0.28 -1.48 16 2 C 0.15 1.91 3.49 -67.60 -0.24 1.68 16 3 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.14 -2.10 4.84 -26.61 -0.13 -2.23 16 5 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 6 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 7 N -0.75 -16.92 4.92 -53.39 -0.26 -17.18 16 8 C -0.25 -6.65 10.41 -15.06 -0.16 -6.80 16 9 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 12 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 15 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 16 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 17 C 0.10 1.20 5.35 -3.72 -0.02 1.18 16 18 N -0.59 -7.48 2.97 -166.44 -0.49 -7.97 16 19 C 0.56 7.35 6.55 -12.46 -0.08 7.27 16 20 O -0.53 -7.96 10.89 5.29 0.06 -7.90 16 21 C -0.09 -1.03 4.79 -104.67 -0.50 -1.53 16 22 C -0.08 -0.76 7.58 -39.12 -0.30 -1.05 16 23 C -0.10 -0.74 9.93 -39.98 -0.40 -1.14 16 24 C -0.10 -0.74 9.79 -39.47 -0.39 -1.13 16 25 C -0.03 -0.27 5.74 -106.84 -0.61 -0.89 16 26 C -0.16 -1.41 9.88 -39.37 -0.39 -1.80 16 27 C 0.08 0.79 11.07 -17.97 -0.20 0.59 16 28 N -0.49 -6.40 10.30 -13.21 -0.14 -6.53 16 29 C 0.16 2.11 10.46 -17.06 -0.18 1.93 16 30 C -0.08 -0.99 5.76 -106.59 -0.61 -1.60 16 31 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 32 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 8.21 5.66 -40.82 -0.23 7.98 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.89 5.20 -51.93 -0.27 0.62 16 42 H 0.14 1.01 7.44 -52.49 -0.39 0.62 16 43 H 0.14 0.61 8.06 -52.48 -0.42 0.19 16 44 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 45 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 46 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 47 H 0.17 2.34 6.35 -52.49 -0.33 2.00 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -32.88 370.48 -10.13 -43.00 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.59 Total: 8.18 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -4.35 Total: -6.37 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.12 Total: -59.65 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.06 Total: -7.90 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.88 -10.13 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044801019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.624 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds