Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58376 * 2 1 4 4 C 1.53188 * 109.58521 * 239.71952 * 2 1 3 5 5 C 1.53036 * 109.31288 * 185.57374 * 4 2 1 6 6 H 1.08998 * 109.46213 * 301.36328 * 5 4 2 7 7 N 1.46493 * 109.46335 * 181.38712 * 5 4 2 8 8 C 1.36935 * 120.00407 * 154.97823 * 7 5 4 9 9 H 1.08001 * 119.99915 * 359.97438 * 8 7 5 10 10 C 1.38815 * 120.00545 * 180.02562 * 8 7 5 11 11 N 1.31612 * 120.00245 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99528 * 359.97438 * 10 8 7 13 13 H 1.48508 * 109.46832 * 90.00492 * 12 10 8 14 14 H 1.48492 * 109.47542 * 330.00629 * 12 10 8 15 15 H 1.48498 * 109.47040 * 210.00025 * 12 10 8 16 16 C 1.53048 * 109.52514 * 61.37142 * 5 4 2 17 17 C 1.53186 * 109.31141 * 298.61662 * 16 5 4 18 18 N 1.46922 * 108.76849 * 54.65517 * 17 16 5 19 19 C 1.34775 * 120.63262 * 126.35915 * 18 17 16 20 20 O 1.21592 * 120.00207 * 185.54805 * 19 18 17 21 21 C 1.47559 * 120.00190 * 5.54602 * 19 18 17 22 22 C 1.38712 * 120.43177 * 50.10778 * 21 19 18 23 23 C 1.38999 * 120.75004 * 180.02562 * 22 21 19 24 24 C 1.36338 * 121.19493 * 359.97438 * 23 22 21 25 25 C 1.40357 * 119.92692 * 0.02562 * 24 23 22 26 26 C 1.40679 * 122.10145 * 179.97438 * 25 24 23 27 27 C 1.36259 * 118.66834 * 179.97438 * 26 25 24 28 28 N 1.32515 * 121.84030 * 359.97438 * 27 26 25 29 29 C 1.31320 * 122.71810 * 0.02562 * 28 27 26 30 30 C 1.40138 * 119.91720 * 359.75130 * 29 28 27 31 31 H 1.08994 * 109.47048 * 183.32353 * 1 2 3 32 32 H 1.09002 * 109.47246 * 303.32556 * 1 2 3 33 33 H 1.09000 * 109.47524 * 63.31930 * 1 2 3 34 34 H 1.09002 * 109.49705 * 65.62838 * 4 2 1 35 35 H 1.08995 * 109.50055 * 305.52911 * 4 2 1 36 36 H 0.97006 * 120.00079 * 334.97585 * 7 5 4 37 37 H 0.97008 * 120.00161 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49328 * 58.58258 * 16 5 4 39 39 H 1.08994 * 109.49631 * 178.67157 * 16 5 4 40 40 H 1.09002 * 109.60181 * 294.86238 * 17 16 5 41 41 H 1.09004 * 109.70333 * 174.50154 * 17 16 5 42 42 H 1.08000 * 119.62185 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.40177 * 179.97438 * 23 22 21 44 44 H 1.08003 * 120.04110 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.67081 * 359.97181 * 26 25 24 46 46 H 1.08003 * 119.08802 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.03826 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2463 5 6 3.5674 -0.8464 -1.1713 6 1 4.0060 0.1489 -1.0989 7 7 4.0651 -1.5125 -2.3774 8 6 5.3494 -1.2945 -2.7995 9 1 5.9954 -0.6312 -2.2434 10 6 5.8209 -1.9253 -3.9426 11 7 7.0552 -1.7154 -4.3485 12 14 4.7035 -3.0721 -4.9048 13 1 3.9685 -2.2968 -5.9363 14 1 3.7325 -3.7090 -3.9792 15 1 5.5210 -4.1221 -5.5638 16 6 3.9566 -1.6659 0.0613 17 6 3.4650 -0.9486 1.3224 18 7 2.0226 -0.7011 1.1936 19 6 1.1674 -1.1097 2.1517 20 8 -0.0315 -0.9899 1.9880 21 6 1.6859 -1.7027 3.3995 22 6 2.6816 -1.0612 4.1215 23 6 3.1752 -1.6141 5.2973 24 6 2.6981 -2.7983 5.7756 25 6 1.6905 -3.4809 5.0764 26 6 1.1655 -4.7055 5.5278 27 6 0.1880 -5.3078 4.7940 28 7 -0.2766 -4.7718 3.6747 29 6 0.1674 -3.6325 3.1957 30 6 1.1700 -2.9306 3.8783 31 1 -0.3633 -1.0259 0.0596 32 1 -0.3634 0.5646 0.8587 33 1 -0.3634 0.4614 -0.9182 34 1 1.7660 -0.1640 -2.1370 35 1 1.6029 -1.7236 -1.2936 36 1 3.4849 -2.1080 -2.8770 37 1 7.3848 -2.1565 -5.1472 38 1 3.4978 -2.6528 0.0016 39 1 5.0408 -1.7700 0.1014 40 1 3.9903 0.0003 1.4317 41 1 3.6520 -1.5724 2.1965 42 1 3.0782 -0.1219 3.7655 43 1 3.9509 -1.0962 5.8420 44 1 3.0954 -3.2112 6.6911 45 1 1.5298 -5.1592 6.4377 46 1 -0.2197 -6.2483 5.1341 47 1 -0.2422 -3.2353 2.2787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044801019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = 33.396937 kcal Electronic energy + Delta-G solvation = -29643.745097 eV Core-core repulsion = 25791.425525 eV Total energy + Delta-G solvation = -3852.319572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.30940 -41.14482 -38.86097 -38.24685 -36.31629 -34.65111 -33.87149 -33.27550 -32.25346 -31.62623 -30.55127 -28.47833 -26.12448 -25.53415 -24.69729 -24.60663 -24.10300 -22.66327 -21.67154 -20.49824 -19.58975 -19.02621 -18.28743 -17.90179 -17.27297 -17.02245 -16.73704 -16.35959 -15.92838 -15.70417 -15.67397 -15.28914 -15.11808 -14.90831 -14.82422 -14.61904 -14.55115 -14.09922 -13.75541 -13.62814 -13.41404 -13.29095 -13.08712 -12.99588 -12.86989 -12.69402 -12.60170 -12.40508 -12.15141 -12.04975 -11.95933 -11.79236 -11.40858 -11.19864 -10.94552 -10.56308 -10.18614 -10.16041 -9.66090 -9.32484 -9.06525 -8.02086 -5.34558 -0.84979 -0.14063 0.62393 1.37575 1.38444 1.45587 1.55562 1.85393 2.09628 2.47604 3.01633 3.24652 3.30107 3.44008 3.48814 3.63285 3.72173 3.81436 3.84657 3.93791 3.97601 4.03839 4.18644 4.21789 4.30728 4.39277 4.48912 4.56657 4.59399 4.61752 4.63916 4.73289 4.77975 4.83717 4.87512 4.96588 5.00550 5.02690 5.13167 5.21593 5.24904 5.35672 5.39863 5.45348 5.59722 5.66872 5.77386 5.78549 6.22323 6.33100 6.93430 7.05003 7.07973 7.84937 8.02585 9.19225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.003084 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.628029 B = 9076.694826 C = 9302.510942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.151 3.849 3 H 0.094 0.906 4 C -0.130 4.130 5 C 0.177 3.823 6 H 0.056 0.944 7 N -0.753 5.753 8 C -0.222 4.222 9 H 0.065 0.935 10 C -0.061 4.061 11 N -0.982 5.982 12 Si 0.947 3.053 13 H -0.279 1.279 14 H -0.260 1.260 15 H -0.298 1.298 16 C -0.143 4.143 17 C 0.111 3.889 18 N -0.593 5.593 19 C 0.558 3.442 20 O -0.554 6.554 21 C -0.122 4.122 22 C -0.070 4.070 23 C -0.102 4.102 24 C -0.082 4.082 25 C -0.047 4.047 26 C -0.138 4.138 27 C 0.051 3.949 28 N -0.512 5.512 29 C 0.125 3.875 30 C -0.094 4.094 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.362 0.638 37 H 0.257 0.743 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.153 0.847 43 H 0.173 0.827 44 H 0.173 0.827 45 H 0.180 0.820 46 H 0.178 0.822 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.673 0.000 25.829 27.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 H 0.112 0.888 4 C -0.169 4.169 5 C 0.069 3.931 6 H 0.074 0.926 7 N -0.396 5.396 8 C -0.353 4.353 9 H 0.083 0.917 10 C -0.253 4.253 11 N -0.633 5.633 12 Si 0.775 3.225 13 H -0.205 1.205 14 H -0.185 1.185 15 H -0.225 1.225 16 C -0.183 4.183 17 C -0.011 4.011 18 N -0.325 5.325 19 C 0.347 3.653 20 O -0.434 6.434 21 C -0.127 4.127 22 C -0.088 4.088 23 C -0.121 4.121 24 C -0.099 4.099 25 C -0.053 4.053 26 C -0.157 4.157 27 C -0.092 4.092 28 N -0.221 5.221 29 C -0.045 4.045 30 C -0.097 4.097 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.194 0.806 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.171 0.829 43 H 0.190 0.810 44 H 0.190 0.810 45 H 0.198 0.802 46 H 0.195 0.805 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.748 -0.394 25.356 27.948 hybrid contribution 0.283 -0.512 -1.080 1.228 sum -11.465 -0.905 24.275 26.862 Atomic orbital electron populations 1.22071 0.92535 1.02490 1.01123 1.21335 0.95534 0.95677 0.82653 0.88775 1.22230 0.95283 1.00971 0.98369 1.20396 0.92431 0.95015 0.85220 0.92575 1.42871 1.11663 1.55351 1.29674 1.19045 0.88886 1.21293 1.06122 0.91696 1.25388 0.97509 1.02545 0.99840 1.69857 1.17257 1.49231 1.26968 0.85528 0.78661 0.79114 0.79147 1.20535 1.18476 1.22502 1.22444 1.01130 0.99221 0.95551 1.22032 0.78718 1.01904 0.98454 1.48179 1.08042 1.56477 1.19813 1.18461 0.85856 0.77500 0.83467 1.90851 1.16136 1.56573 1.79856 1.19882 0.99896 0.96235 0.96723 1.21787 0.92391 0.99969 0.94672 1.21360 1.00033 0.95687 0.94994 1.21585 0.93696 0.94632 1.00034 1.18509 0.97199 0.95907 0.93653 1.22352 0.97079 0.94261 1.02041 1.22756 0.95235 1.00775 0.90411 1.67434 1.28183 1.11819 1.14627 1.23163 0.92507 0.90123 0.98678 1.18851 0.98395 0.95588 0.96836 0.93087 0.91715 0.92373 0.90035 0.92792 0.80583 0.93456 0.93720 0.91585 0.88632 0.88283 0.82887 0.80998 0.80995 0.80240 0.80472 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 7.59 71.98 0.55 -2.65 16 2 C 0.15 3.75 3.49 44.97 0.16 3.91 16 3 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.81 4.84 30.67 0.15 -3.66 16 5 C 0.18 6.17 2.73 45.02 0.12 6.30 16 6 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 7 N -0.75 -33.96 4.92 -322.82 -1.59 -35.55 16 8 C -0.22 -12.20 10.41 84.03 0.87 -11.33 16 9 H 0.07 3.84 8.06 -2.91 -0.02 3.81 16 10 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 11 N -0.98 -62.04 13.97 21.65 0.30 -61.74 16 12 Si 0.95 45.67 27.74 68.60 1.90 47.58 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 14 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 15 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 16 C -0.14 -4.41 5.66 30.67 0.17 -4.23 16 17 C 0.11 2.46 5.35 86.36 0.46 2.92 16 18 N -0.59 -14.40 2.97 -798.75 -2.37 -16.77 16 19 C 0.56 14.65 6.55 86.70 0.57 15.22 16 20 O -0.55 -17.33 10.89 -4.00 -0.04 -17.38 16 21 C -0.12 -2.73 4.79 -19.89 -0.10 -2.82 16 22 C -0.07 -1.03 7.58 22.57 0.17 -0.86 16 23 C -0.10 -1.01 9.93 22.01 0.22 -0.79 16 24 C -0.08 -0.89 9.79 22.34 0.22 -0.67 16 25 C -0.05 -0.85 5.74 -21.30 -0.12 -0.97 16 26 C -0.14 -2.06 9.88 22.40 0.22 -1.84 16 27 C 0.05 1.00 11.07 84.13 0.93 1.93 16 28 N -0.51 -13.97 10.30 -195.72 -2.02 -15.99 16 29 C 0.13 3.56 10.46 85.23 0.89 4.45 16 30 C -0.09 -2.27 5.76 -21.14 -0.12 -2.39 16 31 H 0.05 1.51 6.76 -2.39 -0.02 1.50 16 32 H 0.06 1.74 6.74 -2.39 -0.02 1.72 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.36 16.18 5.66 -92.70 -0.52 15.66 16 37 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 38 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 1.90 5.20 -2.38 -0.01 1.89 16 42 H 0.15 1.68 7.44 -2.91 -0.02 1.66 16 43 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 44 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 45 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 46 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 47 H 0.15 4.55 6.35 -2.91 -0.02 4.53 16 Total: -1.00 -75.58 370.48 2.42 -73.15 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.41 Total: 27.27 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.83 Total: -0.58 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -5.68 Total: -130.04 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.04 Total: -17.38 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.58 kcal Total: -75.58 2.42 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044801019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.550 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds