Wall clock time and date at job start Tue Mar 31 2020 22:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.70285 * 2 1 4 4 C 1.53190 * 109.58903 * 120.35611 * 2 1 3 5 5 C 1.53041 * 109.31517 * 174.42501 * 4 2 1 6 6 H 1.09005 * 109.45057 * 58.64535 * 5 4 2 7 7 N 1.46498 * 109.45960 * 178.61223 * 5 4 2 8 8 C 1.36946 * 119.99702 * 205.06412 * 7 5 4 9 9 H 1.07996 * 120.00139 * 359.73239 * 8 7 5 10 10 C 1.38816 * 119.99686 * 179.72691 * 8 7 5 11 11 N 1.31621 * 120.00071 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99802 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47142 * 90.00016 * 12 10 8 14 14 H 1.48492 * 109.47186 * 209.99958 * 12 10 8 15 15 H 1.48500 * 109.47302 * 329.99963 * 12 10 8 16 16 C 1.53045 * 109.53853 * 298.63638 * 5 4 2 17 17 C 1.53193 * 109.31155 * 61.36138 * 16 5 4 18 18 N 1.46926 * 108.77680 * 305.36622 * 17 16 5 19 19 C 1.34773 * 120.63020 * 233.58767 * 18 17 16 20 20 O 1.21591 * 119.99845 * 174.85793 * 19 18 17 21 21 C 1.47565 * 120.00323 * 354.85996 * 19 18 17 22 22 C 1.38714 * 120.43258 * 309.82744 * 21 19 18 23 23 C 1.39000 * 120.75160 * 180.02562 * 22 21 19 24 24 C 1.36345 * 121.18908 * 359.97438 * 23 22 21 25 25 C 1.40348 * 119.93285 * 359.97438 * 24 23 22 26 26 C 1.40680 * 122.10212 * 179.97438 * 25 24 23 27 27 C 1.36268 * 118.66659 * 179.97438 * 26 25 24 28 28 N 1.32516 * 121.83606 * 359.97438 * 27 26 25 29 29 C 1.31315 * 122.72348 * 0.02562 * 28 27 26 30 30 C 1.40135 * 119.91495 * 359.73897 * 29 28 27 31 31 H 1.09001 * 109.46756 * 176.95266 * 1 2 3 32 32 H 1.09002 * 109.47392 * 296.94801 * 1 2 3 33 33 H 1.09003 * 109.47385 * 56.95650 * 1 2 3 34 34 H 1.09004 * 109.49837 * 54.47334 * 4 2 1 35 35 H 1.09006 * 109.49613 * 294.37679 * 4 2 1 36 36 H 0.96998 * 120.00336 * 24.79720 * 7 5 4 37 37 H 0.96993 * 119.99765 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.49829 * 181.31509 * 16 5 4 39 39 H 1.09005 * 109.49150 * 301.41333 * 16 5 4 40 40 H 1.09003 * 109.58520 * 65.15843 * 17 16 5 41 41 H 1.09000 * 109.58006 * 185.43869 * 17 16 5 42 42 H 1.07998 * 119.62218 * 0.02562 * 22 21 19 43 43 H 1.07998 * 119.40376 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.02913 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.66737 * 359.97438 * 26 25 24 46 46 H 1.07990 * 119.07972 * 180.02562 * 27 26 25 47 47 H 1.07995 * 120.03505 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1701 6 1 4.0059 0.1476 1.0992 7 7 4.0652 -1.5156 2.3754 8 6 5.3494 -1.2975 2.7982 9 1 5.9965 -0.6366 2.2407 10 6 5.8191 -1.9258 3.9434 11 7 5.0305 -2.7315 4.6226 12 14 7.5705 -1.6277 4.5205 13 1 7.5957 -0.4672 5.4468 14 1 8.0716 -2.8347 5.2255 15 1 8.4366 -1.3440 3.3481 16 6 3.9570 -1.6656 -0.0635 17 6 3.4651 -0.9468 -1.3238 18 7 2.0225 -0.6995 -1.1945 19 6 1.1675 -1.1062 -2.1536 20 8 -0.0311 -0.9798 -1.9929 21 6 1.6859 -1.7048 -3.3988 22 6 2.6854 -1.0694 -4.1208 23 6 3.1782 -1.6270 -5.2949 24 6 2.6969 -2.8107 -5.7706 25 6 1.6861 -3.4877 -5.0708 26 6 1.1561 -4.7108 -5.5203 27 6 0.1763 -5.3082 -4.7854 28 7 -0.2851 -4.7690 -3.6662 29 6 0.1635 -3.6309 -3.1890 30 6 1.1755 -2.9389 -3.8677 31 1 -0.3633 -1.0262 -0.0546 32 1 -0.3634 0.4657 0.9161 33 1 -0.3634 0.5604 -0.8615 34 1 1.6030 -1.7254 1.2913 35 1 1.7660 -0.1668 2.1368 36 1 3.4840 -2.1092 2.8761 37 1 5.3587 -3.1702 5.4230 38 1 5.0412 -1.7694 -0.1037 39 1 3.4984 -2.6527 -0.0053 40 1 3.9903 0.0022 -1.4317 41 1 3.6542 -1.5706 -2.1974 42 1 3.0853 -0.1307 -3.7668 43 1 3.9568 -1.1139 -5.8395 44 1 3.0931 -3.2268 -6.6851 45 1 1.5184 -5.1673 -6.4295 46 1 -0.2351 -6.2475 -5.1240 47 1 -0.2437 -3.2312 -2.2721 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044801020.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:52 Heat of formation + Delta-G solvation = 30.448879 kcal Electronic energy + Delta-G solvation = -29574.766356 eV Core-core repulsion = 25722.318947 eV Total energy + Delta-G solvation = -3852.447409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.30039 -41.13075 -38.79400 -38.23955 -36.19835 -34.64407 -33.75282 -33.26628 -32.24814 -31.18245 -30.46075 -28.41373 -26.15352 -25.61109 -24.71645 -24.67659 -24.14190 -22.70565 -21.57001 -20.39806 -19.18045 -18.99814 -18.27927 -17.89838 -17.27640 -17.02762 -16.70647 -16.35125 -15.69983 -15.67965 -15.54059 -15.46318 -15.17623 -14.91197 -14.83741 -14.61315 -14.46016 -13.93212 -13.65203 -13.49557 -13.37566 -13.16015 -13.04405 -12.86939 -12.85723 -12.63633 -12.63210 -12.39603 -12.16800 -12.03633 -11.95981 -11.70855 -11.38123 -11.19262 -10.88855 -10.55642 -10.18004 -10.15619 -9.64596 -9.08930 -8.98876 -7.92492 -5.21704 -0.84362 -0.13432 0.63037 1.48617 1.50180 1.55695 1.58357 1.86501 2.10649 2.57321 3.02139 3.26627 3.40878 3.44494 3.63725 3.72198 3.73203 3.84017 3.85749 3.94853 4.01733 4.07616 4.20145 4.24040 4.32235 4.39857 4.51640 4.60061 4.61280 4.64169 4.69783 4.75810 4.78605 4.84195 4.87635 4.98885 5.01625 5.05279 5.14402 5.22228 5.26610 5.36207 5.41483 5.49368 5.54248 5.60451 5.67648 5.78301 6.28563 6.34832 6.94011 7.05846 7.34531 8.10147 8.33112 9.31308 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.002949 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.708737 B = 9492.954705 C = 9942.009250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.153 3.847 3 H 0.096 0.904 4 C -0.125 4.125 5 C 0.174 3.826 6 H 0.056 0.944 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.972 3.028 13 H -0.289 1.289 14 H -0.301 1.301 15 H -0.265 1.265 16 C -0.141 4.141 17 C 0.111 3.889 18 N -0.593 5.593 19 C 0.556 3.444 20 O -0.556 6.556 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.101 4.101 24 C -0.082 4.082 25 C -0.047 4.047 26 C -0.138 4.138 27 C 0.051 3.949 28 N -0.513 5.513 29 C 0.124 3.876 30 C -0.095 4.095 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.369 0.631 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.174 0.826 45 H 0.181 0.819 46 H 0.178 0.822 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 3.391 -26.904 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 H 0.114 0.886 4 C -0.164 4.164 5 C 0.066 3.934 6 H 0.074 0.926 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.100 0.900 10 C -0.271 4.271 11 N -0.625 5.625 12 Si 0.801 3.199 13 H -0.216 1.216 14 H -0.228 1.228 15 H -0.189 1.189 16 C -0.181 4.181 17 C -0.011 4.011 18 N -0.325 5.325 19 C 0.346 3.654 20 O -0.436 6.436 21 C -0.127 4.127 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.099 4.099 25 C -0.053 4.053 26 C -0.157 4.157 27 C -0.092 4.092 28 N -0.221 5.221 29 C -0.046 4.046 30 C -0.097 4.097 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.200 0.800 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.173 0.827 43 H 0.192 0.808 44 H 0.191 0.809 45 H 0.199 0.801 46 H 0.195 0.805 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.863 2.987 -26.439 27.048 hybrid contribution 0.953 -0.179 1.108 1.472 sum -3.911 2.808 -25.331 25.784 Atomic orbital electron populations 1.22071 0.92733 1.02304 1.01096 1.21329 0.95409 0.95659 0.82638 0.88589 1.22173 0.95979 1.00302 0.97955 1.20419 0.92113 0.94905 0.85946 0.92637 1.42686 1.12164 1.54674 1.28267 1.19659 0.90041 1.21147 1.05740 0.89990 1.25578 1.02088 1.00528 0.98948 1.69836 1.37286 1.35553 1.19774 0.85160 0.80186 0.76323 0.78236 1.21588 1.22784 1.18922 1.22459 1.01085 0.98938 0.95667 1.22058 0.78657 1.01968 0.98425 1.48186 1.08161 1.56522 1.19600 1.18501 0.85865 0.77548 0.83514 1.90848 1.16230 1.56608 1.79905 1.19883 1.00020 0.96060 0.96781 1.21797 0.92227 1.00059 0.94664 1.21370 1.00063 0.95599 0.94951 1.21590 0.93586 0.94697 1.00056 1.18512 0.97317 0.95986 0.93445 1.22359 0.96962 0.94267 1.02078 1.22765 0.95312 1.00784 0.90370 1.67423 1.28496 1.11562 1.14640 1.23141 0.92491 0.90259 0.98694 1.18856 0.98383 0.95607 0.96889 0.93430 0.92586 0.91429 0.93735 0.90903 0.80024 0.94247 0.91285 0.94624 0.88265 0.88317 0.82745 0.80826 0.80905 0.80133 0.80451 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 7.59 71.98 0.55 -2.96 16 2 C 0.15 4.13 3.49 44.97 0.16 4.29 16 3 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.13 -4.14 4.84 30.67 0.15 -3.99 16 5 C 0.17 6.47 2.73 45.02 0.12 6.59 16 6 H 0.06 1.99 8.08 -2.38 -0.02 1.97 16 7 N -0.74 -36.53 5.12 -322.79 -1.65 -38.19 16 8 C -0.23 -12.57 9.93 84.03 0.83 -11.73 16 9 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 10 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 11 N -0.97 -59.87 13.06 21.65 0.28 -59.58 16 12 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 16 C -0.14 -4.56 5.66 30.67 0.17 -4.38 16 17 C 0.11 2.54 5.34 86.36 0.46 3.00 16 18 N -0.59 -15.32 2.97 -798.72 -2.37 -17.69 16 19 C 0.56 15.46 6.54 86.70 0.57 16.02 16 20 O -0.56 -18.38 10.91 -4.00 -0.04 -18.42 16 21 C -0.12 -2.85 4.80 -19.89 -0.10 -2.95 16 22 C -0.07 -1.04 7.57 22.57 0.17 -0.87 16 23 C -0.10 -1.01 9.93 22.01 0.22 -0.79 16 24 C -0.08 -0.91 9.79 22.34 0.22 -0.69 16 25 C -0.05 -0.88 5.74 -21.30 -0.12 -1.00 16 26 C -0.14 -2.15 9.88 22.41 0.22 -1.92 16 27 C 0.05 1.04 11.07 84.13 0.93 1.97 16 28 N -0.51 -14.71 10.30 -195.73 -2.02 -16.73 16 29 C 0.12 3.73 10.46 85.23 0.89 4.62 16 30 C -0.09 -2.39 5.76 -21.14 -0.12 -2.52 16 31 H 0.05 1.55 6.80 -2.39 -0.02 1.53 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.94 6.70 -2.39 -0.02 1.92 16 34 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.45 8.14 -2.38 -0.02 2.44 16 36 H 0.37 20.21 7.80 -92.71 -0.72 19.48 16 37 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.10 1.96 5.19 -2.39 -0.01 1.94 16 42 H 0.15 1.69 7.43 -2.91 -0.02 1.67 16 43 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 44 H 0.17 0.60 8.06 -2.91 -0.02 0.57 16 45 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 46 H 0.18 2.47 8.06 -2.92 -0.02 2.45 16 47 H 0.14 4.77 6.36 -2.91 -0.02 4.75 16 Total: -1.00 -74.72 373.59 2.28 -72.44 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.27 Total: 32.15 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 5.79 Total: -1.35 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.76 Total: -132.19 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.04 Total: -18.42 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -74.72 2.28 -72.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044801020.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.885 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds