Wall clock time and date at job start Tue Mar 31 2020 22:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.59072 * 2 1 4 4 C 1.53174 * 109.58758 * 239.56906 * 2 1 3 5 5 C 1.53043 * 109.32586 * 185.57141 * 4 2 1 6 6 H 1.09006 * 109.45857 * 181.39015 * 5 4 2 7 7 N 1.46500 * 109.45995 * 301.35675 * 5 4 2 8 8 C 1.36938 * 120.00400 * 205.03048 * 7 5 4 9 9 H 1.07998 * 119.99191 * 359.97438 * 8 7 5 10 10 C 1.38803 * 120.00524 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00358 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 119.99760 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46899 * 90.00116 * 12 10 8 14 14 H 1.48493 * 109.46908 * 329.99980 * 12 10 8 15 15 H 1.48502 * 109.46830 * 209.99912 * 12 10 8 16 16 C 1.53037 * 109.52694 * 61.37253 * 5 4 2 17 17 C 1.53192 * 109.31372 * 298.64140 * 16 5 4 18 18 N 1.46923 * 108.77568 * 54.63641 * 17 16 5 19 19 C 1.34780 * 120.63222 * 126.41484 * 18 17 16 20 20 O 1.21543 * 119.99844 * 177.62612 * 19 18 17 21 21 C 1.47881 * 119.99750 * 357.62096 * 19 18 17 22 22 C 1.40603 * 119.73173 * 33.39866 * 21 19 18 23 23 C 1.35851 * 120.95214 * 179.74938 * 22 21 19 24 24 C 1.40490 * 119.88003 * 0.52427 * 23 22 21 25 25 C 1.40488 * 121.84296 * 179.71177 * 24 23 22 26 26 N 1.31207 * 119.93916 * 180.02562 * 25 24 23 27 27 C 1.32553 * 122.80960 * 0.02562 * 26 25 24 28 28 C 1.36224 * 121.84418 * 359.97438 * 27 26 25 29 29 C 1.40765 * 118.67245 * 0.02562 * 28 27 26 30 30 C 1.38530 * 119.73136 * 213.67391 * 21 19 18 31 31 H 1.09004 * 109.47236 * 306.43869 * 1 2 3 32 32 H 1.08995 * 109.47402 * 66.43949 * 1 2 3 33 33 H 1.09006 * 109.47368 * 186.44233 * 1 2 3 34 34 H 1.08996 * 109.47540 * 65.62357 * 4 2 1 35 35 H 1.08996 * 109.50113 * 305.53101 * 4 2 1 36 36 H 0.97004 * 120.00216 * 25.02887 * 7 5 4 37 37 H 0.97003 * 120.00339 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49727 * 58.59237 * 16 5 4 39 39 H 1.09004 * 109.49466 * 178.65592 * 16 5 4 40 40 H 1.08993 * 109.58543 * 174.42447 * 17 16 5 41 41 H 1.09005 * 109.58380 * 294.70379 * 17 16 5 42 42 H 1.08002 * 119.52535 * 359.97438 * 22 21 19 43 43 H 1.08000 * 120.06081 * 180.27915 * 23 22 21 44 44 H 1.07997 * 120.02736 * 0.05047 * 25 24 23 45 45 H 1.07997 * 119.08258 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.66601 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.36452 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5674 -0.8494 -1.1692 6 1 3.9375 -1.3474 -2.0655 7 7 4.1570 0.4884 -1.0757 8 6 5.4411 0.7022 -1.5008 9 1 6.0192 -0.1158 -1.9046 10 6 5.9998 1.9696 -1.4117 11 7 7.2342 2.1749 -1.8198 12 14 4.9999 3.3841 -0.7124 13 1 5.2090 3.4597 0.7559 14 1 3.5597 3.1601 -0.9965 15 1 5.4363 4.6569 -1.3408 16 6 3.9568 -1.6657 0.0653 17 6 3.4650 -0.9455 1.3247 18 7 2.0225 -0.6982 1.1952 19 6 1.1674 -1.1037 2.1549 20 8 -0.0183 -0.8552 2.0568 21 6 1.6719 -1.8510 3.3271 22 6 2.9514 -1.5679 3.8366 23 6 3.4374 -2.2356 4.9153 24 6 2.6609 -3.2324 5.5295 25 6 3.1250 -3.9525 6.6430 26 7 2.3686 -4.8762 7.1871 27 6 1.1601 -5.1749 6.7319 28 6 0.6182 -4.5354 5.6581 29 6 1.3701 -3.5309 5.0200 30 6 0.8822 -2.8282 3.9106 31 1 -0.3634 0.6104 0.8268 32 1 -0.3634 0.4107 -0.9419 33 1 -0.3634 -1.0212 0.1153 34 1 1.7657 -0.1693 -2.1362 35 1 1.6029 -1.7269 -1.2890 36 1 3.6378 1.2230 -0.7126 37 1 7.6246 3.0607 -1.7579 38 1 3.4982 -2.6529 0.0083 39 1 5.0411 -1.7700 0.1053 40 1 3.6518 -1.5692 2.1988 41 1 3.9922 0.0025 1.4329 42 1 3.5551 -0.8060 3.3660 43 1 4.4204 -2.0034 5.2975 44 1 4.1034 -3.7456 7.0508 45 1 0.5890 -5.9469 7.2261 46 1 -0.3686 -4.7938 5.3034 47 1 -0.0985 -3.0462 3.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044807298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:02 Heat of formation + Delta-G solvation = 72.777339 kcal Electronic energy + Delta-G solvation = -29666.522899 eV Core-core repulsion = 25815.910990 eV Total energy + Delta-G solvation = -3850.611909 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.37408 -40.39590 -37.90067 -37.26892 -34.50868 -33.38537 -33.14457 -32.02000 -31.03245 -30.03069 -29.70992 -27.32518 -25.34729 -24.67845 -23.81510 -23.12153 -22.81822 -21.81137 -20.53902 -18.89629 -18.45514 -17.80034 -17.30858 -16.92131 -16.17548 -15.86448 -15.45850 -15.22179 -14.85397 -14.55512 -14.38876 -14.26483 -14.09488 -13.85888 -13.79068 -13.42171 -13.14547 -13.02766 -12.65064 -12.51873 -12.40812 -12.33628 -12.10020 -11.69507 -11.51308 -11.24540 -11.05086 -10.96296 -10.86277 -10.62183 -10.32489 -10.31081 -10.11818 -9.84115 -9.65404 -9.38387 -9.07693 -8.95545 -8.44804 -8.33447 -7.36211 -5.84988 -3.21125 -0.05593 0.41211 1.54863 2.33556 2.89772 3.13802 3.29082 3.32090 3.39086 3.75850 4.07704 4.21329 4.25222 4.45001 4.49888 4.50550 4.71909 4.79699 4.89166 5.04128 5.06649 5.15268 5.24608 5.26633 5.36359 5.39126 5.44304 5.48967 5.53825 5.63499 5.65552 5.71717 5.80603 5.88444 5.93737 5.97848 5.99245 6.09489 6.23351 6.28170 6.32245 6.39689 6.42394 6.53247 6.58068 6.63687 6.85863 7.48280 7.63458 7.91012 8.15713 8.33979 9.11800 9.84395 10.03889 11.33262 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.003163 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.380401 B = 8851.369000 C = 9765.767544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.144 3.856 3 H 0.073 0.927 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.060 0.940 7 N -0.746 5.746 8 C -0.243 4.243 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.149 4.149 17 C 0.080 3.920 18 N -0.589 5.589 19 C 0.553 3.447 20 O -0.535 6.535 21 C -0.101 4.101 22 C -0.108 4.108 23 C -0.091 4.091 24 C -0.100 4.100 25 C 0.145 3.855 26 N -0.487 5.487 27 C 0.071 3.929 28 C -0.146 4.146 29 C -0.032 4.032 30 C -0.053 4.053 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.360 0.640 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.154 0.846 43 H 0.141 0.859 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.140 0.860 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -12.479 13.948 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.373 4.373 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.216 1.216 16 C -0.189 4.189 17 C -0.041 4.041 18 N -0.321 5.321 19 C 0.341 3.659 20 O -0.414 6.414 21 C -0.105 4.105 22 C -0.126 4.126 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.027 4.027 26 N -0.194 5.194 27 C -0.072 4.072 28 C -0.166 4.166 29 C -0.037 4.037 30 C -0.072 4.072 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.171 0.829 43 H 0.159 0.841 44 H 0.183 0.817 45 H 0.171 0.829 46 H 0.157 0.843 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.214 -12.892 14.481 22.915 hybrid contribution -0.721 1.629 -0.356 1.816 sum -12.935 -11.263 14.124 22.219 Atomic orbital electron populations 1.22205 0.92857 1.03487 1.00689 1.21301 0.95224 0.95563 0.83790 0.90876 1.22287 0.97445 1.00669 0.97140 1.20168 0.90106 0.87155 0.95661 0.92157 1.42875 1.14250 1.05148 1.76746 1.19060 0.87953 0.95942 1.34371 0.89123 1.24648 0.96024 0.97048 1.01162 1.69689 1.13449 1.22067 1.52776 0.86659 0.79855 0.83524 0.79106 1.21075 1.20403 1.21650 1.22491 1.01978 0.98018 0.96460 1.22712 0.79033 1.02171 1.00233 1.48109 1.07901 1.56310 1.19800 1.18284 0.85884 0.79351 0.82355 1.90826 1.16017 1.56997 1.77574 1.20134 0.95123 0.98078 0.97196 1.21578 0.94456 1.00849 0.95712 1.20952 1.00045 0.95042 0.95059 1.19162 0.94760 0.98394 0.97854 1.23272 0.98790 0.89873 0.90742 1.67387 1.05984 1.15476 1.30593 1.22182 0.91803 0.98858 0.94342 1.21975 1.00954 0.96411 0.97255 1.18112 0.93793 0.96274 0.95570 1.21298 0.99248 0.93387 0.93302 0.90978 0.93780 0.91531 0.90488 0.91533 0.80643 0.93005 0.92877 0.90144 0.88064 0.89838 0.82874 0.84099 0.81721 0.82920 0.84253 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.60 37.15 0.28 -1.66 16 2 C 0.14 2.19 3.19 -67.61 -0.22 1.97 16 3 H 0.07 1.23 6.65 -51.93 -0.35 0.88 16 4 C -0.14 -2.04 5.07 -26.62 -0.13 -2.18 16 5 C 0.18 3.10 3.10 -67.89 -0.21 2.89 16 6 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 7 N -0.75 -15.98 4.11 -53.39 -0.22 -16.20 16 8 C -0.24 -6.36 10.41 -15.06 -0.16 -6.52 16 9 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.13 13.97 55.49 0.78 -27.36 16 12 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 C -0.15 -2.24 5.78 -26.61 -0.15 -2.40 16 17 C 0.08 1.11 4.63 -3.71 -0.02 1.10 16 18 N -0.59 -8.53 2.97 -166.33 -0.49 -9.03 16 19 C 0.55 7.99 7.28 -12.31 -0.09 7.90 16 20 O -0.53 -8.75 12.24 5.33 0.07 -8.69 16 21 C -0.10 -1.23 5.52 -104.95 -0.58 -1.81 16 22 C -0.11 -1.14 7.32 -39.55 -0.29 -1.43 16 23 C -0.09 -0.82 9.77 -39.59 -0.39 -1.21 16 24 C -0.10 -0.98 5.75 -106.78 -0.61 -1.60 16 25 C 0.14 1.31 11.04 -16.97 -0.19 1.12 16 26 N -0.49 -4.99 10.29 -13.15 -0.14 -5.13 16 27 C 0.07 0.63 11.07 -17.97 -0.20 0.43 16 28 C -0.15 -1.28 9.88 -39.35 -0.39 -1.66 16 29 C -0.03 -0.34 5.74 -106.83 -0.61 -0.95 16 30 C -0.05 -0.59 9.38 -38.78 -0.36 -0.96 16 31 H 0.07 1.12 6.70 -51.93 -0.35 0.77 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.99 6.78 -51.93 -0.35 0.64 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.36 7.73 3.93 -40.82 -0.16 7.57 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.10 1.19 3.53 -53.97 -0.19 1.00 16 41 H 0.08 1.32 7.73 -51.93 -0.40 0.92 16 42 H 0.15 1.57 5.31 -52.49 -0.28 1.29 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 46 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 47 H 0.14 1.47 7.96 -52.49 -0.42 1.05 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -31.85 366.06 -9.93 -41.78 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.31 Total: 9.52 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -4.41 Total: -6.87 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.07 Total: -57.71 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.85 -9.93 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.555 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds