Wall clock time and date at job start Tue Mar 31 2020 22:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.59072 * 2 1 4 4 C 1.53174 * 109.58758 * 239.56906 * 2 1 3 5 5 C 1.53043 * 109.32586 * 185.57141 * 4 2 1 6 6 H 1.09006 * 109.45857 * 181.39015 * 5 4 2 7 7 N 1.46500 * 109.45995 * 301.35675 * 5 4 2 8 8 C 1.36938 * 120.00400 * 205.03048 * 7 5 4 9 9 H 1.07998 * 119.99191 * 359.97438 * 8 7 5 10 10 C 1.38803 * 120.00524 * 180.02562 * 8 7 5 11 11 N 1.31619 * 120.00358 * 179.97438 * 10 8 7 12 12 Si 1.86809 * 119.99760 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.46899 * 90.00116 * 12 10 8 14 14 H 1.48493 * 109.46908 * 329.99980 * 12 10 8 15 15 H 1.48502 * 109.46830 * 209.99912 * 12 10 8 16 16 C 1.53037 * 109.52694 * 61.37253 * 5 4 2 17 17 C 1.53192 * 109.31372 * 298.64140 * 16 5 4 18 18 N 1.46923 * 108.77568 * 54.63641 * 17 16 5 19 19 C 1.34780 * 120.63222 * 126.41484 * 18 17 16 20 20 O 1.21543 * 119.99844 * 177.62612 * 19 18 17 21 21 C 1.47881 * 119.99750 * 357.62096 * 19 18 17 22 22 C 1.40603 * 119.73173 * 33.39866 * 21 19 18 23 23 C 1.35851 * 120.95214 * 179.74938 * 22 21 19 24 24 C 1.40490 * 119.88003 * 0.52427 * 23 22 21 25 25 C 1.40488 * 121.84296 * 179.71177 * 24 23 22 26 26 N 1.31207 * 119.93916 * 180.02562 * 25 24 23 27 27 C 1.32553 * 122.80960 * 0.02562 * 26 25 24 28 28 C 1.36224 * 121.84418 * 359.97438 * 27 26 25 29 29 C 1.40765 * 118.67245 * 0.02562 * 28 27 26 30 30 C 1.38530 * 119.73136 * 213.67391 * 21 19 18 31 31 H 1.09004 * 109.47236 * 306.43869 * 1 2 3 32 32 H 1.08995 * 109.47402 * 66.43949 * 1 2 3 33 33 H 1.09006 * 109.47368 * 186.44233 * 1 2 3 34 34 H 1.08996 * 109.47540 * 65.62357 * 4 2 1 35 35 H 1.08996 * 109.50113 * 305.53101 * 4 2 1 36 36 H 0.97004 * 120.00216 * 25.02887 * 7 5 4 37 37 H 0.97003 * 120.00339 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49727 * 58.59237 * 16 5 4 39 39 H 1.09004 * 109.49466 * 178.65592 * 16 5 4 40 40 H 1.08993 * 109.58543 * 174.42447 * 17 16 5 41 41 H 1.09005 * 109.58380 * 294.70379 * 17 16 5 42 42 H 1.08002 * 119.52535 * 359.97438 * 22 21 19 43 43 H 1.08000 * 120.06081 * 180.27915 * 23 22 21 44 44 H 1.07997 * 120.02736 * 0.05047 * 25 24 23 45 45 H 1.07997 * 119.08258 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.66601 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.36452 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5674 -0.8494 -1.1692 6 1 3.9375 -1.3474 -2.0655 7 7 4.1570 0.4884 -1.0757 8 6 5.4411 0.7022 -1.5008 9 1 6.0192 -0.1158 -1.9046 10 6 5.9998 1.9696 -1.4117 11 7 7.2342 2.1749 -1.8198 12 14 4.9999 3.3841 -0.7124 13 1 5.2090 3.4597 0.7559 14 1 3.5597 3.1601 -0.9965 15 1 5.4363 4.6569 -1.3408 16 6 3.9568 -1.6657 0.0653 17 6 3.4650 -0.9455 1.3247 18 7 2.0225 -0.6982 1.1952 19 6 1.1674 -1.1037 2.1549 20 8 -0.0183 -0.8552 2.0568 21 6 1.6719 -1.8510 3.3271 22 6 2.9514 -1.5679 3.8366 23 6 3.4374 -2.2356 4.9153 24 6 2.6609 -3.2324 5.5295 25 6 3.1250 -3.9525 6.6430 26 7 2.3686 -4.8762 7.1871 27 6 1.1601 -5.1749 6.7319 28 6 0.6182 -4.5354 5.6581 29 6 1.3701 -3.5309 5.0200 30 6 0.8822 -2.8282 3.9106 31 1 -0.3634 0.6104 0.8268 32 1 -0.3634 0.4107 -0.9419 33 1 -0.3634 -1.0212 0.1153 34 1 1.7657 -0.1693 -2.1362 35 1 1.6029 -1.7269 -1.2890 36 1 3.6378 1.2230 -0.7126 37 1 7.6246 3.0607 -1.7579 38 1 3.4982 -2.6529 0.0083 39 1 5.0411 -1.7700 0.1053 40 1 3.6518 -1.5692 2.1988 41 1 3.9922 0.0025 1.4329 42 1 3.5551 -0.8060 3.3660 43 1 4.4204 -2.0034 5.2975 44 1 4.1034 -3.7456 7.0508 45 1 0.5890 -5.9469 7.2261 46 1 -0.3686 -4.7938 5.3034 47 1 -0.0985 -3.0462 3.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044807298.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:01 Heat of formation + Delta-G solvation = 54.464248 kcal Electronic energy + Delta-G solvation = -29667.317014 eV Core-core repulsion = 25815.910990 eV Total energy + Delta-G solvation = -3851.406024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.27069 -41.34629 -39.09591 -38.17367 -36.05151 -34.41086 -33.98610 -33.77468 -31.96965 -31.39001 -30.73639 -28.55257 -26.28518 -25.73620 -25.23079 -24.47611 -23.62688 -22.82157 -21.69396 -20.12499 -19.80319 -19.30579 -18.15631 -17.76812 -17.09730 -16.91569 -16.75721 -16.45139 -15.97398 -15.77763 -15.52656 -15.26933 -15.17922 -14.94713 -14.87821 -14.55225 -14.45244 -14.20485 -13.89160 -13.77197 -13.50557 -13.29264 -13.15279 -13.02012 -12.91715 -12.59856 -12.54479 -12.17392 -12.10316 -12.01388 -11.80291 -11.65876 -11.47749 -11.21207 -10.91148 -10.56454 -10.31488 -10.01024 -9.63885 -9.25866 -9.09371 -7.99229 -5.31313 -0.79674 -0.34996 0.81839 1.37234 1.38390 1.44616 1.45876 1.82610 2.19889 2.48657 3.02937 3.27328 3.32912 3.49555 3.53470 3.58658 3.72981 3.77581 3.84267 3.91241 3.98070 4.00425 4.07617 4.24525 4.26699 4.29479 4.41529 4.55513 4.60733 4.65193 4.68999 4.73236 4.80486 4.87653 4.92798 5.00390 5.01891 5.06105 5.14959 5.20450 5.22036 5.24678 5.28430 5.37936 5.59477 5.65403 5.71159 5.82918 6.24596 6.36160 6.96914 7.04321 7.11046 7.87293 8.05642 9.22458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.003163 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.380401 B = 8851.369000 C = 9765.767544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.125 4.125 5 C 0.171 3.829 6 H 0.050 0.950 7 N -0.746 5.746 8 C -0.216 4.216 9 H 0.062 0.938 10 C -0.059 4.059 11 N -0.984 5.984 12 Si 0.940 3.060 13 H -0.277 1.277 14 H -0.258 1.258 15 H -0.301 1.301 16 C -0.141 4.141 17 C 0.085 3.915 18 N -0.590 5.590 19 C 0.553 3.447 20 O -0.558 6.558 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.076 4.076 24 C -0.111 4.111 25 C 0.145 3.855 26 N -0.508 5.508 27 C 0.066 3.934 28 C -0.150 4.150 29 C -0.046 4.046 30 C -0.055 4.055 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.065 0.935 42 H 0.155 0.845 43 H 0.172 0.828 44 H 0.194 0.806 45 H 0.177 0.823 46 H 0.161 0.839 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -13.685 15.823 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.038 3.962 3 H 0.075 0.925 4 C -0.164 4.164 5 C 0.063 3.937 6 H 0.068 0.932 7 N -0.390 5.390 8 C -0.348 4.348 9 H 0.080 0.920 10 C -0.251 4.251 11 N -0.635 5.635 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.183 1.183 15 H -0.228 1.228 16 C -0.182 4.182 17 C -0.037 4.037 18 N -0.321 5.321 19 C 0.343 3.657 20 O -0.439 6.439 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.095 4.095 24 C -0.113 4.113 25 C -0.026 4.026 26 N -0.216 5.216 27 C -0.076 4.076 28 C -0.169 4.169 29 C -0.051 4.051 30 C -0.074 4.074 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.196 0.804 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.172 0.828 43 H 0.189 0.811 44 H 0.210 0.790 45 H 0.194 0.806 46 H 0.178 0.822 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.695 -14.144 16.371 25.605 hybrid contribution -0.309 1.824 -0.880 2.049 sum -14.003 -12.320 15.491 24.246 Atomic orbital electron populations 1.22052 0.92066 1.02992 1.00865 1.21269 0.95757 0.94876 0.84266 0.92465 1.22180 0.95267 1.01805 0.97167 1.20401 0.91677 0.85305 0.96350 0.93197 1.42852 1.12663 1.07046 1.76451 1.19009 0.89246 0.94743 1.31759 0.92018 1.25329 0.97071 0.99805 1.02860 1.69858 1.15596 1.22385 1.55640 0.85635 0.79371 0.79681 0.78439 1.20359 1.18255 1.22818 1.22355 1.01300 0.98772 0.95734 1.22714 0.78590 1.01632 1.00714 1.48102 1.08016 1.56302 1.19726 1.18617 0.85520 0.78951 0.82654 1.90812 1.16973 1.57883 1.78208 1.20021 0.96212 0.98788 0.96932 1.21564 0.94092 1.01629 0.96864 1.21264 1.00899 0.93559 0.93789 1.19395 0.94787 0.98806 0.98311 1.23739 0.99686 0.89058 0.90147 1.67452 1.06765 1.16133 1.31261 1.22620 0.91620 0.99112 0.94277 1.22223 1.01792 0.95827 0.97083 1.18331 0.94496 0.96730 0.95540 1.21350 0.99232 0.93315 0.93532 0.92331 0.92371 0.91962 0.90321 0.89636 0.80381 0.93542 0.90707 0.91514 0.85368 0.91692 0.82757 0.81077 0.78959 0.80606 0.82175 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 7.60 71.98 0.55 -2.81 16 2 C 0.14 4.10 3.19 44.97 0.14 4.25 16 3 H 0.06 1.85 6.65 -2.39 -0.02 1.84 16 4 C -0.13 -3.53 5.07 30.67 0.16 -3.38 16 5 C 0.17 5.76 3.10 45.02 0.14 5.90 16 6 H 0.05 1.80 8.08 -2.38 -0.02 1.78 16 7 N -0.75 -31.58 4.11 -322.82 -1.33 -32.91 16 8 C -0.22 -11.45 10.41 84.03 0.87 -10.58 16 9 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 10 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 11 N -0.98 -61.03 13.97 21.65 0.30 -60.73 16 12 Si 0.94 43.98 27.74 68.60 1.90 45.88 16 13 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 14 H -0.26 -11.02 6.52 99.48 0.65 -10.37 16 15 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 16 C -0.14 -4.08 5.78 30.67 0.18 -3.90 16 17 C 0.08 2.25 4.63 86.36 0.40 2.65 16 18 N -0.59 -16.30 2.97 -798.42 -2.37 -18.67 16 19 C 0.55 15.34 7.28 86.80 0.63 15.97 16 20 O -0.56 -17.82 12.24 -3.85 -0.05 -17.86 16 21 C -0.12 -2.65 5.52 -20.08 -0.11 -2.76 16 22 C -0.12 -2.37 7.32 22.29 0.16 -2.21 16 23 C -0.08 -1.15 9.77 22.26 0.22 -0.94 16 24 C -0.11 -1.91 5.75 -21.26 -0.12 -2.03 16 25 C 0.14 2.21 11.04 85.33 0.94 3.16 16 26 N -0.51 -9.18 10.29 -195.51 -2.01 -11.19 16 27 C 0.07 1.00 11.07 84.11 0.93 1.94 16 28 C -0.15 -2.28 9.88 22.42 0.22 -2.06 16 29 C -0.05 -0.86 5.74 -21.29 -0.12 -0.99 16 30 C -0.06 -1.15 9.38 22.79 0.21 -0.94 16 31 H 0.06 1.77 6.70 -2.38 -0.02 1.76 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.76 6.78 -2.38 -0.02 1.75 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.36 15.15 3.93 -92.71 -0.36 14.79 16 37 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 38 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 40 H 0.13 2.77 3.53 -4.31 -0.02 2.75 16 41 H 0.06 1.99 7.73 -2.38 -0.02 1.97 16 42 H 0.16 2.88 5.31 -2.91 -0.02 2.87 16 43 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 45 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 46 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.14 2.81 7.96 -2.91 -0.02 2.79 16 Total: -1.00 -69.76 366.06 2.89 -66.88 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.57 Total: 30.20 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.87 Total: -1.60 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -5.41 Total: -123.50 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.05 Total: -17.86 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.90 Total: 45.88 kcal Total: -69.76 2.89 -66.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807298.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.339 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds