Wall clock time and date at job start Tue Mar 31 2020 22:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.70583 * 2 1 4 4 C 1.52768 * 109.42860 * 120.16387 * 2 1 3 5 5 C 1.53042 * 109.38104 * 65.42194 * 4 2 1 6 6 H 1.08992 * 109.45146 * 301.22506 * 5 4 2 7 7 N 1.46500 * 109.45524 * 181.26036 * 5 4 2 8 8 C 1.36944 * 119.99943 * 154.93519 * 7 5 4 9 9 H 1.08000 * 119.99744 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00051 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99677 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47037 * 89.99476 * 12 10 8 14 14 H 1.48493 * 109.47227 * 209.99901 * 12 10 8 15 15 H 1.48508 * 109.46792 * 329.99658 * 12 10 8 16 16 C 1.53037 * 109.54106 * 61.24089 * 5 4 2 17 17 C 1.53196 * 109.31325 * 298.63353 * 16 5 4 18 18 N 1.46927 * 108.77404 * 54.63428 * 17 16 5 19 19 C 1.34778 * 120.63481 * 126.37287 * 18 17 16 20 20 O 1.21541 * 120.00311 * 185.66072 * 19 18 17 21 21 C 1.47885 * 119.99419 * 5.66032 * 19 18 17 22 22 C 1.40597 * 119.73330 * 37.01735 * 21 19 18 23 23 C 1.35853 * 120.95417 * 179.97438 * 22 21 19 24 24 C 1.40489 * 119.88272 * 359.97438 * 23 22 21 25 25 C 1.40481 * 121.84974 * 180.02562 * 24 23 22 26 26 N 1.31219 * 119.93992 * 179.97438 * 25 24 23 27 27 C 1.32552 * 122.80720 * 0.02562 * 26 25 24 28 28 C 1.36219 * 121.84531 * 0.02562 * 27 26 25 29 29 C 1.40760 * 118.67489 * 359.95916 * 28 27 26 30 30 C 1.38536 * 119.73080 * 216.99108 * 21 19 18 31 31 H 1.08996 * 109.47451 * 180.35371 * 1 2 3 32 32 H 1.08996 * 109.47209 * 300.36012 * 1 2 3 33 33 H 1.09007 * 109.46753 * 60.35356 * 1 2 3 34 34 H 1.08995 * 109.56415 * 305.38762 * 4 2 1 35 35 H 1.08996 * 109.35915 * 185.33212 * 4 2 1 36 36 H 0.97003 * 120.00103 * 334.92940 * 7 5 4 37 37 H 0.97006 * 119.99358 * 180.02562 * 11 10 8 38 38 H 1.08992 * 109.50256 * 178.68123 * 16 5 4 39 39 H 1.09008 * 109.52084 * 58.59748 * 16 5 4 40 40 H 1.08996 * 109.58478 * 294.85061 * 17 16 5 41 41 H 1.08997 * 109.70591 * 174.49111 * 17 16 5 42 42 H 1.07993 * 119.52332 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.05433 * 180.27564 * 23 22 21 44 44 H 1.07996 * 120.03196 * 359.95362 * 25 24 23 45 45 H 1.08007 * 119.07781 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.66611 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.36243 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0382 -0.7239 1.2456 5 6 1.6408 -2.2000 1.1727 6 1 0.5564 -2.2808 1.0995 7 7 2.1012 -2.8895 2.3806 8 6 1.4656 -4.0260 2.8045 9 1 0.6247 -4.4137 2.2487 10 6 1.9014 -4.6790 3.9493 11 7 2.9259 -4.2061 4.6269 12 14 1.0340 -6.2288 4.5281 13 1 1.6746 -7.4159 3.9070 14 1 1.1335 -6.3292 6.0063 15 1 -0.3959 -6.1734 4.1309 16 6 2.2842 -2.8431 -0.0580 17 6 1.7739 -2.1422 -1.3210 18 7 2.0226 -0.6997 -1.1945 19 6 2.6945 -0.0319 -2.1531 20 8 2.9836 1.1374 -1.9904 21 6 3.0799 -0.7219 -3.4031 22 6 2.2100 -1.6672 -3.9744 23 6 2.5388 -2.3153 -5.1222 24 6 3.7636 -2.0423 -5.7539 25 6 4.1450 -2.6877 -6.9420 26 7 5.2978 -2.4035 -7.5007 27 6 6.1437 -1.5188 -6.9921 28 6 5.8691 -0.8397 -5.8436 29 6 4.6502 -1.0903 -5.1858 30 6 4.2949 -0.4312 -4.0018 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8932 34 1 1.5987 -0.2724 2.1350 35 1 3.1239 -0.6414 1.2938 36 1 2.8562 -2.5411 2.8800 37 1 3.2306 -4.6627 5.4267 38 1 2.0198 -3.8998 -0.0964 39 1 3.3678 -2.7411 0.0022 40 1 0.7043 -2.3203 -1.4309 41 1 2.3003 -2.5285 -2.1938 42 1 1.2669 -1.8813 -3.4939 43 1 1.8577 -3.0356 -5.5509 44 1 3.4901 -3.4172 -7.3950 45 1 7.0772 -1.3317 -7.5021 46 1 6.5725 -0.1231 -5.4458 47 1 4.9610 0.2955 -3.5605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044807302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:09 Heat of formation + Delta-G solvation = 38.655974 kcal Electronic energy + Delta-G solvation = -29013.239478 eV Core-core repulsion = 25161.147955 eV Total energy + Delta-G solvation = -3852.091523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.32435 -40.27039 -37.95672 -37.15235 -34.64673 -33.38407 -32.93633 -31.88038 -31.13311 -30.00733 -29.36687 -27.35673 -25.45791 -24.42761 -23.96726 -23.03117 -22.68337 -21.83535 -20.74672 -18.90858 -18.41349 -17.54704 -17.07639 -16.91747 -16.55168 -15.81187 -15.24346 -15.20068 -14.94021 -14.56303 -14.29821 -14.10566 -14.01296 -13.88484 -13.59895 -13.51582 -13.15703 -13.05144 -12.77982 -12.74799 -12.62568 -12.23140 -11.85551 -11.68792 -11.37838 -11.32515 -10.97619 -10.90678 -10.81759 -10.58603 -10.46854 -10.24455 -10.04091 -9.81562 -9.74899 -9.66833 -9.33069 -8.94011 -8.60549 -8.41399 -7.02168 -5.81790 -3.11186 -0.07720 0.38837 1.52729 2.30379 2.83132 3.08267 3.39081 3.44175 3.46250 3.73309 4.05702 4.18051 4.20720 4.41826 4.46602 4.53348 4.68086 4.77186 4.85622 5.01377 5.09696 5.18868 5.23524 5.26291 5.33564 5.34603 5.41372 5.50655 5.57457 5.59831 5.68170 5.70376 5.75395 5.84535 5.91847 5.95254 6.00447 6.12454 6.23559 6.25355 6.33375 6.37978 6.41136 6.48575 6.57878 6.83949 6.99316 7.39726 7.61746 7.63656 8.07115 8.36358 9.47590 10.05019 10.39439 11.40704 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002668 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.393750 B =10493.595166 C =11505.355654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.097 0.903 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.094 3.906 18 N -0.591 5.591 19 C 0.556 3.444 20 O -0.541 6.541 21 C -0.101 4.101 22 C -0.095 4.095 23 C -0.092 4.092 24 C -0.099 4.099 25 C 0.144 3.856 26 N -0.486 5.486 27 C 0.072 3.928 28 C -0.145 4.145 29 C -0.032 4.032 30 C -0.052 4.052 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.141 0.859 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 6.727 -22.080 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.115 0.885 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.029 4.029 18 N -0.323 5.323 19 C 0.344 3.656 20 O -0.419 6.419 21 C -0.105 4.105 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.101 4.101 25 C -0.028 4.028 26 N -0.193 5.193 27 C -0.071 4.071 28 C -0.165 4.165 29 C -0.037 4.037 30 C -0.071 4.071 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.182 0.818 45 H 0.172 0.828 46 H 0.159 0.841 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.208 6.853 -22.674 23.687 hybrid contribution -0.324 -0.503 1.410 1.532 sum -0.116 6.349 -21.263 22.191 Atomic orbital electron populations 1.22157 0.94834 1.02880 1.02019 1.21152 0.94071 0.97166 0.83772 0.88537 1.22145 1.01477 0.97312 0.96373 1.20193 0.96763 0.89113 0.87030 0.93057 1.42439 1.38208 1.29345 1.26410 1.19211 1.10412 1.01144 1.06357 0.91194 1.24753 0.98517 0.99466 0.98158 1.69664 1.27707 1.41254 1.19344 0.86216 0.78905 0.83350 0.77858 1.21724 1.21777 1.20752 1.22698 1.01308 1.00567 0.94687 1.22309 1.00963 0.79245 1.00381 1.48142 1.54485 1.09564 1.20129 1.18290 0.77896 0.86291 0.83082 1.90768 1.54919 1.16386 1.79829 1.20025 0.96001 0.98265 0.96254 1.21200 1.00015 0.94579 0.95571 1.20896 0.95385 0.99886 0.95034 1.19148 0.95800 0.97938 0.97254 1.23255 0.92767 0.96103 0.90658 1.67390 1.03643 1.15023 1.33287 1.22194 0.98595 0.92583 0.93739 1.21996 0.96501 1.01175 0.96782 1.18114 0.94560 0.95977 0.95040 1.21344 0.95498 0.97220 0.93018 0.91550 0.91150 0.92873 0.90392 0.91838 0.78277 0.93470 0.90544 0.92198 0.91197 0.89447 0.84223 0.84190 0.81756 0.82846 0.84147 0.84034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.02 37.16 0.34 -1.58 16 2 C 0.14 1.96 3.20 -67.81 -0.22 1.74 16 3 H 0.10 1.42 7.00 -51.93 -0.36 1.05 16 4 C -0.13 -2.16 4.99 -26.83 -0.13 -2.29 16 5 C 0.18 3.27 2.53 -67.89 -0.17 3.10 16 6 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 7 N -0.72 -17.30 5.12 -53.39 -0.27 -17.58 16 8 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 12 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.09 1.15 4.38 -3.71 -0.02 1.13 16 18 N -0.59 -7.92 2.68 -166.56 -0.45 -8.37 16 19 C 0.56 7.91 7.35 -12.31 -0.09 7.82 16 20 O -0.54 -9.28 16.25 5.33 0.09 -9.19 16 21 C -0.10 -1.19 5.24 -104.95 -0.55 -1.74 16 22 C -0.10 -0.89 7.24 -39.55 -0.29 -1.18 16 23 C -0.09 -0.74 9.77 -39.59 -0.39 -1.13 16 24 C -0.10 -0.93 5.75 -106.78 -0.61 -1.55 16 25 C 0.14 1.24 11.04 -16.97 -0.19 1.05 16 26 N -0.49 -4.89 10.29 -13.15 -0.14 -5.02 16 27 C 0.07 0.63 11.07 -17.97 -0.20 0.43 16 28 C -0.14 -1.27 9.88 -39.36 -0.39 -1.66 16 29 C -0.03 -0.33 5.74 -106.83 -0.61 -0.94 16 30 C -0.05 -0.58 9.40 -38.78 -0.36 -0.95 16 31 H 0.07 0.80 5.74 -51.93 -0.30 0.51 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.38 9.95 7.80 -40.82 -0.32 9.64 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 40 H 0.07 0.75 7.43 -51.93 -0.39 0.36 16 41 H 0.09 0.94 4.53 -51.93 -0.24 0.71 16 42 H 0.14 1.11 6.17 -52.49 -0.32 0.79 16 43 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 44 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.14 1.52 8.01 -52.48 -0.42 1.10 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -32.78 376.26 -10.13 -42.90 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.45 Total: 9.01 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -4.28 Total: -7.30 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.13 Total: -57.87 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.78 -10.13 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.561 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds