Wall clock time and date at job start Tue Mar 31 2020 22:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.70583 * 2 1 4 4 C 1.52768 * 109.42860 * 120.16387 * 2 1 3 5 5 C 1.53042 * 109.38104 * 65.42194 * 4 2 1 6 6 H 1.08992 * 109.45146 * 301.22506 * 5 4 2 7 7 N 1.46500 * 109.45524 * 181.26036 * 5 4 2 8 8 C 1.36944 * 119.99943 * 154.93519 * 7 5 4 9 9 H 1.08000 * 119.99744 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00051 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99677 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47037 * 89.99476 * 12 10 8 14 14 H 1.48493 * 109.47227 * 209.99901 * 12 10 8 15 15 H 1.48508 * 109.46792 * 329.99658 * 12 10 8 16 16 C 1.53037 * 109.54106 * 61.24089 * 5 4 2 17 17 C 1.53196 * 109.31325 * 298.63353 * 16 5 4 18 18 N 1.46927 * 108.77404 * 54.63428 * 17 16 5 19 19 C 1.34778 * 120.63481 * 126.37287 * 18 17 16 20 20 O 1.21541 * 120.00311 * 185.66072 * 19 18 17 21 21 C 1.47885 * 119.99419 * 5.66032 * 19 18 17 22 22 C 1.40597 * 119.73330 * 37.01735 * 21 19 18 23 23 C 1.35853 * 120.95417 * 179.97438 * 22 21 19 24 24 C 1.40489 * 119.88272 * 359.97438 * 23 22 21 25 25 C 1.40481 * 121.84974 * 180.02562 * 24 23 22 26 26 N 1.31219 * 119.93992 * 179.97438 * 25 24 23 27 27 C 1.32552 * 122.80720 * 0.02562 * 26 25 24 28 28 C 1.36219 * 121.84531 * 0.02562 * 27 26 25 29 29 C 1.40760 * 118.67489 * 359.95916 * 28 27 26 30 30 C 1.38536 * 119.73080 * 216.99108 * 21 19 18 31 31 H 1.08996 * 109.47451 * 180.35371 * 1 2 3 32 32 H 1.08996 * 109.47209 * 300.36012 * 1 2 3 33 33 H 1.09007 * 109.46753 * 60.35356 * 1 2 3 34 34 H 1.08995 * 109.56415 * 305.38762 * 4 2 1 35 35 H 1.08996 * 109.35915 * 185.33212 * 4 2 1 36 36 H 0.97003 * 120.00103 * 334.92940 * 7 5 4 37 37 H 0.97006 * 119.99358 * 180.02562 * 11 10 8 38 38 H 1.08992 * 109.50256 * 178.68123 * 16 5 4 39 39 H 1.09008 * 109.52084 * 58.59748 * 16 5 4 40 40 H 1.08996 * 109.58478 * 294.85061 * 17 16 5 41 41 H 1.08997 * 109.70591 * 174.49111 * 17 16 5 42 42 H 1.07993 * 119.52332 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.05433 * 180.27564 * 23 22 21 44 44 H 1.07996 * 120.03196 * 359.95362 * 25 24 23 45 45 H 1.08007 * 119.07781 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.66611 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.36243 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0382 -0.7239 1.2456 5 6 1.6408 -2.2000 1.1727 6 1 0.5564 -2.2808 1.0995 7 7 2.1012 -2.8895 2.3806 8 6 1.4656 -4.0260 2.8045 9 1 0.6247 -4.4137 2.2487 10 6 1.9014 -4.6790 3.9493 11 7 2.9259 -4.2061 4.6269 12 14 1.0340 -6.2288 4.5281 13 1 1.6746 -7.4159 3.9070 14 1 1.1335 -6.3292 6.0063 15 1 -0.3959 -6.1734 4.1309 16 6 2.2842 -2.8431 -0.0580 17 6 1.7739 -2.1422 -1.3210 18 7 2.0226 -0.6997 -1.1945 19 6 2.6945 -0.0319 -2.1531 20 8 2.9836 1.1374 -1.9904 21 6 3.0799 -0.7219 -3.4031 22 6 2.2100 -1.6672 -3.9744 23 6 2.5388 -2.3153 -5.1222 24 6 3.7636 -2.0423 -5.7539 25 6 4.1450 -2.6877 -6.9420 26 7 5.2978 -2.4035 -7.5007 27 6 6.1437 -1.5188 -6.9921 28 6 5.8691 -0.8397 -5.8436 29 6 4.6502 -1.0903 -5.1858 30 6 4.2949 -0.4312 -4.0018 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8932 34 1 1.5987 -0.2724 2.1350 35 1 3.1239 -0.6414 1.2938 36 1 2.8562 -2.5411 2.8800 37 1 3.2306 -4.6627 5.4267 38 1 2.0198 -3.8998 -0.0964 39 1 3.3678 -2.7411 0.0022 40 1 0.7043 -2.3203 -1.4309 41 1 2.3003 -2.5285 -2.1938 42 1 1.2669 -1.8813 -3.4939 43 1 1.8577 -3.0356 -5.5509 44 1 3.4901 -3.4172 -7.3950 45 1 7.0772 -1.3317 -7.5021 46 1 6.5725 -0.1231 -5.4458 47 1 4.9610 0.2955 -3.5605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044807302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:08 Heat of formation + Delta-G solvation = 19.159180 kcal Electronic energy + Delta-G solvation = -29014.084922 eV Core-core repulsion = 25161.147955 eV Total energy + Delta-G solvation = -3852.936967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14754 -41.24414 -39.12757 -38.03077 -36.28280 -34.24692 -33.95176 -33.50790 -32.01505 -31.01006 -30.66813 -28.62956 -26.41361 -25.77733 -25.07908 -24.18790 -23.53441 -22.95730 -21.95058 -20.02079 -19.43731 -18.96957 -18.27325 -17.74346 -17.53438 -16.78062 -16.70026 -16.22587 -15.90099 -15.70153 -15.36150 -15.30081 -15.16547 -14.93974 -14.78010 -14.58210 -14.39356 -14.10880 -13.92866 -13.73157 -13.51483 -13.19398 -13.07331 -12.91370 -12.85129 -12.64744 -12.44923 -12.15143 -12.09898 -12.08212 -11.96838 -11.69040 -11.23603 -11.15361 -11.07187 -10.85369 -10.50334 -10.12400 -9.73866 -9.10990 -8.98973 -7.91955 -5.20688 -0.79652 -0.32987 0.81858 1.42805 1.49300 1.50393 1.58639 1.79842 2.18413 2.57915 3.03511 3.25437 3.41835 3.49698 3.54081 3.73627 3.74763 3.81116 3.84993 3.95689 4.02734 4.07269 4.09326 4.22813 4.29884 4.35919 4.53325 4.54975 4.59660 4.61929 4.67806 4.74085 4.75481 4.83562 4.93939 5.01491 5.03431 5.04940 5.06123 5.18579 5.22323 5.28613 5.33520 5.52302 5.54724 5.60236 5.63032 5.72071 6.29013 6.31304 6.96802 6.97578 7.35411 8.11283 8.33930 9.31912 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.002668 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.393750 B =10493.595166 C =11505.355654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.125 4.125 5 C 0.176 3.824 6 H 0.060 0.940 7 N -0.739 5.739 8 C -0.231 4.231 9 H 0.082 0.918 10 C -0.080 4.080 11 N -0.974 5.974 12 Si 0.970 3.030 13 H -0.289 1.289 14 H -0.301 1.301 15 H -0.265 1.265 16 C -0.143 4.143 17 C 0.102 3.898 18 N -0.590 5.590 19 C 0.555 3.445 20 O -0.579 6.579 21 C -0.114 4.114 22 C -0.106 4.106 23 C -0.073 4.073 24 C -0.112 4.112 25 C 0.147 3.853 26 N -0.509 5.509 27 C 0.067 3.933 28 C -0.155 4.155 29 C -0.047 4.047 30 C -0.066 4.066 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.368 0.632 37 H 0.248 0.752 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.180 0.820 44 H 0.199 0.801 45 H 0.175 0.825 46 H 0.155 0.845 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 5.397 -24.779 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.164 4.164 5 C 0.068 3.932 6 H 0.078 0.922 7 N -0.378 5.378 8 C -0.363 4.363 9 H 0.100 0.900 10 C -0.272 4.272 11 N -0.625 5.625 12 Si 0.800 3.200 13 H -0.216 1.216 14 H -0.228 1.228 15 H -0.190 1.190 16 C -0.184 4.184 17 C -0.020 4.020 18 N -0.321 5.321 19 C 0.344 3.656 20 O -0.460 6.460 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.092 4.092 24 C -0.114 4.114 25 C -0.024 4.024 26 N -0.217 5.217 27 C -0.075 4.075 28 C -0.174 4.174 29 C -0.052 4.052 30 C -0.085 4.085 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.176 0.824 43 H 0.198 0.802 44 H 0.215 0.785 45 H 0.192 0.808 46 H 0.173 0.827 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.880 5.524 -25.430 26.091 hybrid contribution 0.366 -0.033 2.139 2.171 sum -1.514 5.492 -23.291 23.977 Atomic orbital electron populations 1.22097 0.92662 1.03332 1.03020 1.21052 0.95624 0.96234 0.82868 0.89564 1.22015 1.00249 0.96366 0.97730 1.20434 0.97177 0.89800 0.85825 0.92176 1.42695 1.37708 1.29239 1.28131 1.19639 1.09840 1.01139 1.05640 0.89981 1.25560 0.99764 1.02856 0.99025 1.69835 1.29836 1.42904 1.19920 0.85181 0.78617 0.79725 0.76513 1.21610 1.22840 1.18986 1.22493 0.99806 1.00464 0.95609 1.22374 1.02821 0.77941 0.98828 1.48180 1.54178 1.10006 1.19739 1.18716 0.77033 0.85949 0.83861 1.90742 1.56307 1.18171 1.80777 1.19963 0.96913 0.99445 0.95501 1.21357 1.00290 0.94369 0.96387 1.21311 0.94938 0.99178 0.93799 1.19441 0.96329 0.97832 0.97768 1.23810 0.92619 0.95930 0.90058 1.67457 1.04490 1.15750 1.34013 1.22574 0.99239 0.92045 0.93674 1.22204 0.96541 1.01743 0.96959 1.18313 0.95538 0.96469 0.94897 1.21349 0.95687 0.97702 0.93764 0.91222 0.90538 0.91589 0.90798 0.93796 0.80060 0.94283 0.91121 0.94400 0.88275 0.87307 0.82387 0.80237 0.78479 0.80798 0.82726 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.02 71.98 0.65 -2.67 16 2 C 0.15 3.94 3.20 44.83 0.14 4.08 16 3 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 4 C -0.12 -4.05 4.99 30.53 0.15 -3.90 16 5 C 0.18 6.32 2.53 45.02 0.11 6.44 16 6 H 0.06 2.09 6.43 -2.39 -0.02 2.07 16 7 N -0.74 -35.73 5.12 -322.82 -1.65 -37.38 16 8 C -0.23 -12.17 9.93 84.03 0.83 -11.33 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 11 N -0.97 -59.22 13.06 21.65 0.28 -58.94 16 12 Si 0.97 44.90 29.55 68.60 2.03 46.92 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 16 C -0.14 -4.47 5.66 30.67 0.17 -4.29 16 17 C 0.10 2.25 4.38 86.36 0.38 2.63 16 18 N -0.59 -15.12 2.68 -799.15 -2.15 -17.27 16 19 C 0.55 15.56 7.35 86.80 0.64 16.20 16 20 O -0.58 -20.32 16.25 -3.84 -0.06 -20.38 16 21 C -0.11 -2.57 5.24 -20.08 -0.11 -2.67 16 22 C -0.11 -1.66 7.24 22.29 0.16 -1.50 16 23 C -0.07 -0.89 9.77 22.26 0.22 -0.67 16 24 C -0.11 -1.81 5.75 -21.26 -0.12 -1.93 16 25 C 0.15 2.10 11.04 85.33 0.94 3.04 16 26 N -0.51 -9.18 10.29 -195.51 -2.01 -11.19 16 27 C 0.07 1.08 11.07 84.11 0.93 2.01 16 28 C -0.15 -2.60 9.88 22.42 0.22 -2.38 16 29 C -0.05 -0.93 5.74 -21.29 -0.12 -1.05 16 30 C -0.07 -1.48 9.40 22.79 0.21 -1.26 16 31 H 0.07 1.47 5.74 -2.39 -0.01 1.46 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.37 19.80 7.80 -92.71 -0.72 19.08 16 37 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.10 1.69 7.43 -2.39 -0.02 1.67 16 41 H 0.11 2.02 4.53 -2.39 -0.01 2.01 16 42 H 0.16 1.84 6.17 -2.91 -0.02 1.82 16 43 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 44 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 46 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.13 3.04 8.01 -2.91 -0.02 3.02 16 Total: -1.00 -73.05 376.26 2.60 -70.45 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.28 Total: 31.09 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.89 Total: -3.29 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.53 Total: -124.79 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.06 Total: -20.38 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.05 2.60 -70.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044807302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.608 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds