Wall clock time and date at job start Tue Mar 31 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.70346 * 2 1 4 4 C 1.53189 * 109.58767 * 120.36118 * 2 1 3 5 5 C 1.53041 * 109.31323 * 174.42288 * 4 2 1 6 6 H 1.08994 * 109.45901 * 58.63638 * 5 4 2 7 7 N 1.46497 * 109.45996 * 178.61328 * 5 4 2 8 8 C 1.36936 * 120.00209 * 205.02138 * 7 5 4 9 9 H 1.08004 * 119.99595 * 359.73194 * 8 7 5 10 10 C 1.38807 * 120.00189 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00177 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99796 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47151 * 90.00634 * 12 10 8 14 14 H 1.48503 * 109.46827 * 210.00482 * 12 10 8 15 15 H 1.48502 * 109.47440 * 330.00032 * 12 10 8 16 16 C 1.53046 * 109.52379 * 298.62273 * 5 4 2 17 17 C 1.53191 * 109.30919 * 61.38795 * 16 5 4 18 18 N 1.46925 * 109.58326 * 239.64789 * 2 1 3 19 19 C 1.34780 * 120.63222 * 6.62507 * 18 2 1 20 20 O 1.21560 * 120.00248 * 6.23687 * 19 18 2 21 21 C 1.47772 * 119.99860 * 186.23596 * 19 18 2 22 22 C 1.40651 * 119.70144 * 33.79751 * 21 19 18 23 23 C 1.35850 * 120.87611 * 179.70511 * 22 21 19 24 24 C 1.40397 * 119.84183 * 0.56562 * 23 22 21 25 25 C 1.40645 * 121.96876 * 179.67587 * 24 23 22 26 26 C 1.36209 * 118.73200 * 180.02562 * 25 24 23 27 27 N 1.32602 * 121.89934 * 0.04468 * 26 25 24 28 28 C 1.31243 * 122.74303 * 359.97438 * 27 26 25 29 29 C 1.40556 * 119.88577 * 359.97438 * 28 27 26 30 30 C 1.38572 * 119.69803 * 214.07075 * 21 19 18 31 31 H 1.09003 * 109.47165 * 292.46239 * 1 2 3 32 32 H 1.08998 * 109.47338 * 52.46846 * 1 2 3 33 33 H 1.08996 * 109.47010 * 172.46761 * 1 2 3 34 34 H 1.09003 * 109.49717 * 54.46610 * 4 2 1 35 35 H 1.09001 * 109.49437 * 294.37476 * 4 2 1 36 36 H 0.97001 * 119.99923 * 25.02843 * 7 5 4 37 37 H 0.97004 * 120.00039 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49683 * 181.32404 * 16 5 4 39 39 H 1.09003 * 109.50070 * 301.42387 * 16 5 4 40 40 H 1.09004 * 109.58752 * 185.56025 * 17 16 5 41 41 H 1.08997 * 109.59965 * 65.13193 * 17 16 5 42 42 H 1.07995 * 119.55956 * 359.97438 * 22 21 19 43 43 H 1.07999 * 120.07550 * 180.28306 * 23 22 21 44 44 H 1.08001 * 120.62857 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.05166 * 180.02562 * 26 25 24 46 46 H 1.07992 * 120.05417 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.34460 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8480 1.1700 6 1 4.0061 0.1472 1.0990 7 7 4.0653 -1.5159 2.3752 8 6 5.3496 -1.2986 2.7975 9 1 5.9970 -0.6382 2.2397 10 6 5.8210 -1.9310 3.9397 11 7 5.0337 -2.7399 4.6166 12 14 7.5728 -1.6339 4.5162 13 1 7.5982 -0.4771 5.4471 14 1 8.0755 -2.8435 5.2159 15 1 8.4375 -1.3451 3.3439 16 6 3.9566 -1.6660 -0.0637 17 6 3.4650 -0.9469 -1.3238 18 7 2.0225 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1537 20 8 -0.0067 -0.7971 -2.0920 21 6 1.6570 -1.9275 -3.2803 22 6 2.6960 -2.8516 -3.0690 23 6 3.1605 -3.6230 -4.0862 24 6 2.6082 -3.4925 -5.3703 25 6 3.0593 -4.2633 -6.4568 26 6 2.4768 -4.0823 -7.6747 27 7 1.5019 -3.2031 -7.8614 28 6 1.0307 -2.4499 -6.8955 29 6 1.5627 -2.5593 -5.5991 30 6 1.0922 -1.7762 -4.5365 31 1 -0.3634 0.3927 0.9497 32 1 -0.3634 0.6260 -0.8149 33 1 -0.3633 -1.0188 -0.1347 34 1 1.6029 -1.7254 1.2912 35 1 1.7660 -0.1670 2.1367 36 1 3.4850 -2.1121 2.8739 37 1 5.3633 -3.1821 5.4146 38 1 5.0409 -1.7701 -0.1040 39 1 3.4978 -2.6530 -0.0054 40 1 3.6517 -1.5716 -2.1974 41 1 3.9903 0.0020 -1.4318 42 1 3.1274 -2.9523 -2.0840 43 1 3.9557 -4.3318 -3.9084 44 1 3.8525 -4.9848 -6.3279 45 1 2.8190 -4.6717 -8.5125 46 1 0.2350 -1.7478 -7.0962 47 1 0.2973 -1.0625 -4.6950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044812606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:51 Heat of formation + Delta-G solvation = 59.974361 kcal Electronic energy + Delta-G solvation = -29095.659520 eV Core-core repulsion = 25244.492432 eV Total energy + Delta-G solvation = -3851.167088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37564 -40.36673 -37.71831 -37.25860 -34.61854 -33.44370 -33.06819 -31.99957 -31.10391 -30.09964 -29.26790 -27.13028 -25.23177 -24.49376 -24.03318 -22.94779 -22.74925 -21.75157 -20.40762 -19.57547 -18.31338 -17.53705 -17.17579 -17.00212 -16.10624 -15.92984 -15.49709 -15.06982 -14.88380 -14.66091 -14.48614 -14.07045 -13.98909 -13.78942 -13.69242 -13.51306 -13.36985 -13.09287 -12.73475 -12.38718 -12.23073 -12.06180 -11.84133 -11.66881 -11.54773 -11.32527 -10.95744 -10.88503 -10.81705 -10.54364 -10.49688 -10.29274 -9.94310 -9.85210 -9.77459 -9.37557 -9.09623 -8.95114 -8.53039 -8.38549 -7.04510 -5.83446 -3.13051 -0.06900 0.40755 1.50054 2.32339 2.91844 3.07935 3.38211 3.43419 3.45238 3.73723 4.04757 4.18079 4.30383 4.36863 4.49533 4.51690 4.71549 4.77160 4.89490 5.00866 5.10297 5.19069 5.24223 5.28620 5.35268 5.43302 5.45208 5.50907 5.55382 5.57304 5.63289 5.77761 5.84307 5.93585 5.96306 6.01065 6.09305 6.20273 6.25808 6.29216 6.36416 6.40082 6.41854 6.48171 6.67903 6.82651 6.96202 7.44014 7.60888 7.62600 8.14045 8.34605 9.46023 10.02896 10.37553 11.38955 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002705 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.247574 B =10350.615272 C =11859.846591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.147 3.853 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.180 3.820 6 H 0.048 0.952 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.153 4.153 17 C 0.080 3.920 18 N -0.594 5.594 19 C 0.557 3.443 20 O -0.533 6.533 21 C -0.127 4.127 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.010 4.010 25 C -0.158 4.158 26 C 0.080 3.920 27 N -0.493 5.493 28 C 0.156 3.844 29 C -0.122 4.122 30 C -0.026 4.026 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.151 0.849 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 0.454 -21.674 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.363 5.363 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.194 4.194 17 C -0.043 4.043 18 N -0.326 5.326 19 C 0.345 3.655 20 O -0.411 6.411 21 C -0.130 4.130 22 C -0.099 4.099 23 C -0.137 4.137 24 C -0.015 4.015 25 C -0.178 4.178 26 C -0.063 4.063 27 N -0.201 5.201 28 C -0.016 4.016 29 C -0.124 4.124 30 C -0.047 4.047 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.936 0.640 -22.446 23.502 hybrid contribution 1.451 -0.341 1.511 2.122 sum -5.484 0.300 -20.935 21.644 Atomic orbital electron populations 1.22182 0.92816 1.03628 1.00733 1.21345 0.95438 0.95210 0.83534 0.90959 1.22311 0.97563 1.01019 0.96537 1.20145 0.90913 0.94985 0.87023 0.93369 1.42428 1.12952 1.54317 1.26649 1.19217 0.89042 1.22450 1.06515 0.91173 1.24750 0.98169 0.99746 0.98176 1.69659 1.35447 1.33391 1.19459 0.86214 0.84441 0.77127 0.78526 1.21690 1.21785 1.20755 1.22717 1.01872 0.99971 0.94850 1.22568 0.79515 1.01558 1.00638 1.48108 1.07568 1.56948 1.19988 1.18226 0.85716 0.79642 0.81893 1.90828 1.16858 1.56988 1.76467 1.20080 0.98687 0.99636 0.94619 1.21500 0.93923 0.93549 1.00880 1.20933 1.01133 1.00199 0.91392 1.18307 0.94262 0.94416 0.94500 1.21955 1.01785 1.00747 0.93271 1.22242 0.92249 0.95076 0.96704 1.67475 1.11637 1.05824 1.35144 1.23295 0.96355 0.94988 0.86946 1.18979 0.98635 0.98933 0.95888 1.21338 0.96733 0.96333 0.90301 0.93551 0.90886 0.91678 0.91744 0.90447 0.78236 0.93451 0.90408 0.92120 0.88407 0.91310 0.83192 0.84353 0.84211 0.82920 0.81713 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.61 37.16 0.28 -1.60 16 2 C 0.15 2.05 3.49 -67.60 -0.24 1.81 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C -0.14 -2.15 4.84 -26.61 -0.13 -2.28 16 5 C 0.18 3.26 2.73 -67.89 -0.19 3.08 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.10 5.12 -53.39 -0.27 -17.37 16 8 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 9 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.39 13.06 55.49 0.72 -26.67 16 12 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 16 C -0.15 -2.36 5.31 -26.61 -0.14 -2.50 16 17 C 0.08 0.98 5.51 -3.71 -0.02 0.96 16 18 N -0.59 -7.91 2.97 -166.35 -0.49 -8.41 16 19 C 0.56 7.63 7.17 -12.36 -0.09 7.54 16 20 O -0.53 -8.37 12.35 5.31 0.07 -8.30 16 21 C -0.13 -1.48 5.44 -104.97 -0.57 -2.05 16 22 C -0.08 -0.83 7.27 -39.53 -0.29 -1.12 16 23 C -0.12 -1.09 9.77 -39.63 -0.39 -1.48 16 24 C -0.01 -0.09 5.75 -106.74 -0.61 -0.71 16 25 C -0.16 -1.28 9.87 -39.40 -0.39 -1.67 16 26 C 0.08 0.68 11.07 -17.95 -0.20 0.48 16 27 N -0.49 -4.96 10.30 -13.12 -0.14 -5.09 16 28 C 0.16 1.41 11.05 -16.93 -0.19 1.22 16 29 C -0.12 -1.21 5.74 -106.87 -0.61 -1.83 16 30 C -0.03 -0.27 9.38 -38.75 -0.36 -0.63 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.04 6.68 -51.93 -0.35 0.70 16 33 H 0.06 1.00 6.82 -51.93 -0.35 0.64 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 0.97 7.58 -51.93 -0.39 0.58 16 40 H 0.10 1.04 3.53 -51.93 -0.18 0.86 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.15 1.57 4.94 -52.49 -0.26 1.31 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.14 1.31 7.96 -52.49 -0.42 0.89 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -31.57 372.70 -10.36 -41.93 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.47 Total: 9.35 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -4.37 Total: -7.71 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.18 Total: -57.54 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.57 -10.36 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044812606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.906 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds