Wall clock time and date at job start Tue Mar 31 2020 22:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.70346 * 2 1 4 4 C 1.53189 * 109.58767 * 120.36118 * 2 1 3 5 5 C 1.53041 * 109.31323 * 174.42288 * 4 2 1 6 6 H 1.08994 * 109.45901 * 58.63638 * 5 4 2 7 7 N 1.46497 * 109.45996 * 178.61328 * 5 4 2 8 8 C 1.36936 * 120.00209 * 205.02138 * 7 5 4 9 9 H 1.08004 * 119.99595 * 359.73194 * 8 7 5 10 10 C 1.38807 * 120.00189 * 179.97438 * 8 7 5 11 11 N 1.31614 * 120.00177 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99796 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47151 * 90.00634 * 12 10 8 14 14 H 1.48503 * 109.46827 * 210.00482 * 12 10 8 15 15 H 1.48502 * 109.47440 * 330.00032 * 12 10 8 16 16 C 1.53046 * 109.52379 * 298.62273 * 5 4 2 17 17 C 1.53191 * 109.30919 * 61.38795 * 16 5 4 18 18 N 1.46925 * 109.58326 * 239.64789 * 2 1 3 19 19 C 1.34780 * 120.63222 * 6.62507 * 18 2 1 20 20 O 1.21560 * 120.00248 * 6.23687 * 19 18 2 21 21 C 1.47772 * 119.99860 * 186.23596 * 19 18 2 22 22 C 1.40651 * 119.70144 * 33.79751 * 21 19 18 23 23 C 1.35850 * 120.87611 * 179.70511 * 22 21 19 24 24 C 1.40397 * 119.84183 * 0.56562 * 23 22 21 25 25 C 1.40645 * 121.96876 * 179.67587 * 24 23 22 26 26 C 1.36209 * 118.73200 * 180.02562 * 25 24 23 27 27 N 1.32602 * 121.89934 * 0.04468 * 26 25 24 28 28 C 1.31243 * 122.74303 * 359.97438 * 27 26 25 29 29 C 1.40556 * 119.88577 * 359.97438 * 28 27 26 30 30 C 1.38572 * 119.69803 * 214.07075 * 21 19 18 31 31 H 1.09003 * 109.47165 * 292.46239 * 1 2 3 32 32 H 1.08998 * 109.47338 * 52.46846 * 1 2 3 33 33 H 1.08996 * 109.47010 * 172.46761 * 1 2 3 34 34 H 1.09003 * 109.49717 * 54.46610 * 4 2 1 35 35 H 1.09001 * 109.49437 * 294.37476 * 4 2 1 36 36 H 0.97001 * 119.99923 * 25.02843 * 7 5 4 37 37 H 0.97004 * 120.00039 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.49683 * 181.32404 * 16 5 4 39 39 H 1.09003 * 109.50070 * 301.42387 * 16 5 4 40 40 H 1.09004 * 109.58752 * 185.56025 * 17 16 5 41 41 H 1.08997 * 109.59965 * 65.13193 * 17 16 5 42 42 H 1.07995 * 119.55956 * 359.97438 * 22 21 19 43 43 H 1.07999 * 120.07550 * 180.28306 * 23 22 21 44 44 H 1.08001 * 120.62857 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.05166 * 180.02562 * 26 25 24 46 46 H 1.07992 * 120.05417 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.34460 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5676 -0.8480 1.1700 6 1 4.0061 0.1472 1.0990 7 7 4.0653 -1.5159 2.3752 8 6 5.3496 -1.2986 2.7975 9 1 5.9970 -0.6382 2.2397 10 6 5.8210 -1.9310 3.9397 11 7 5.0337 -2.7399 4.6166 12 14 7.5728 -1.6339 4.5162 13 1 7.5982 -0.4771 5.4471 14 1 8.0755 -2.8435 5.2159 15 1 8.4375 -1.3451 3.3439 16 6 3.9566 -1.6660 -0.0637 17 6 3.4650 -0.9469 -1.3238 18 7 2.0225 -0.6995 -1.1945 19 6 1.1673 -1.1061 -2.1537 20 8 -0.0067 -0.7971 -2.0920 21 6 1.6570 -1.9275 -3.2803 22 6 2.6960 -2.8516 -3.0690 23 6 3.1605 -3.6230 -4.0862 24 6 2.6082 -3.4925 -5.3703 25 6 3.0593 -4.2633 -6.4568 26 6 2.4768 -4.0823 -7.6747 27 7 1.5019 -3.2031 -7.8614 28 6 1.0307 -2.4499 -6.8955 29 6 1.5627 -2.5593 -5.5991 30 6 1.0922 -1.7762 -4.5365 31 1 -0.3634 0.3927 0.9497 32 1 -0.3634 0.6260 -0.8149 33 1 -0.3633 -1.0188 -0.1347 34 1 1.6029 -1.7254 1.2912 35 1 1.7660 -0.1670 2.1367 36 1 3.4850 -2.1121 2.8739 37 1 5.3633 -3.1821 5.4146 38 1 5.0409 -1.7701 -0.1040 39 1 3.4978 -2.6530 -0.0054 40 1 3.6517 -1.5716 -2.1974 41 1 3.9903 0.0020 -1.4318 42 1 3.1274 -2.9523 -2.0840 43 1 3.9557 -4.3318 -3.9084 44 1 3.8525 -4.9848 -6.3279 45 1 2.8190 -4.6717 -8.5125 46 1 0.2350 -1.7478 -7.0962 47 1 0.2973 -1.0625 -4.6950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044812606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:50 Heat of formation + Delta-G solvation = 42.012885 kcal Electronic energy + Delta-G solvation = -29096.438388 eV Core-core repulsion = 25244.492432 eV Total energy + Delta-G solvation = -3851.945956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.22777 -41.29066 -38.86982 -38.16502 -36.22020 -34.37249 -33.94674 -33.68574 -31.95391 -31.14906 -30.60441 -28.42326 -26.23028 -25.78113 -25.12255 -24.23015 -23.55707 -22.76240 -21.71748 -20.70075 -19.24963 -19.01551 -18.36437 -17.80097 -17.19408 -16.80898 -16.74533 -16.17166 -16.08241 -15.62964 -15.49199 -15.31485 -15.14612 -14.99884 -14.73657 -14.60869 -14.44848 -14.11533 -13.97407 -13.49935 -13.39751 -13.06738 -13.01017 -12.95376 -12.79882 -12.62967 -12.43602 -12.27587 -12.16392 -12.02221 -11.88436 -11.67978 -11.36319 -11.23197 -10.89953 -10.57143 -10.27994 -10.05426 -9.62433 -9.11376 -8.99603 -7.92332 -5.20942 -0.77824 -0.34542 0.79103 1.46678 1.49197 1.50187 1.58242 1.88726 2.19008 2.57421 3.02628 3.30899 3.41280 3.46533 3.59030 3.66105 3.72963 3.80787 3.86590 3.95784 4.02817 4.06775 4.08405 4.24337 4.29789 4.34387 4.55313 4.61052 4.64306 4.67551 4.69802 4.75322 4.78425 4.81045 4.88244 4.94967 4.99899 5.06391 5.14176 5.17110 5.28905 5.30749 5.40956 5.49551 5.54617 5.60140 5.67718 5.71120 6.29122 6.37694 6.95731 7.07867 7.35623 8.11112 8.34071 9.31223 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.002705 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.247574 B =10350.615272 C =11859.846591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 H 0.086 0.914 4 C -0.124 4.124 5 C 0.174 3.826 6 H 0.048 0.952 7 N -0.737 5.737 8 C -0.233 4.233 9 H 0.079 0.921 10 C -0.077 4.077 11 N -0.972 5.972 12 Si 0.969 3.031 13 H -0.290 1.290 14 H -0.300 1.300 15 H -0.266 1.266 16 C -0.140 4.140 17 C 0.089 3.911 18 N -0.596 5.596 19 C 0.556 3.444 20 O -0.558 6.558 21 C -0.144 4.144 22 C -0.091 4.091 23 C -0.110 4.110 24 C -0.023 4.023 25 C -0.156 4.156 26 C 0.072 3.928 27 N -0.513 5.513 28 C 0.151 3.849 29 C -0.133 4.133 30 C -0.022 4.022 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.370 0.630 37 H 0.249 0.751 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.148 0.852 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.178 0.822 46 H 0.187 0.813 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 0.638 -24.069 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.049 3.951 3 H 0.104 0.896 4 C -0.163 4.163 5 C 0.066 3.934 6 H 0.066 0.934 7 N -0.376 5.376 8 C -0.364 4.364 9 H 0.097 0.903 10 C -0.269 4.269 11 N -0.623 5.623 12 Si 0.798 3.202 13 H -0.218 1.218 14 H -0.227 1.227 15 H -0.191 1.191 16 C -0.181 4.181 17 C -0.033 4.033 18 N -0.327 5.327 19 C 0.346 3.654 20 O -0.438 6.438 21 C -0.147 4.147 22 C -0.110 4.110 23 C -0.128 4.128 24 C -0.028 4.028 25 C -0.175 4.175 26 C -0.070 4.070 27 N -0.222 5.222 28 C -0.020 4.020 29 C -0.135 4.135 30 C -0.042 4.042 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.202 0.798 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.138 0.862 41 H 0.100 0.900 42 H 0.165 0.835 43 H 0.180 0.820 44 H 0.185 0.815 45 H 0.195 0.805 46 H 0.204 0.796 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.907 0.858 -24.902 25.607 hybrid contribution 1.066 -0.411 2.103 2.393 sum -4.841 0.446 -22.799 23.312 Atomic orbital electron populations 1.22041 0.92613 1.02454 1.01147 1.21277 0.95488 0.95535 0.82848 0.89632 1.22159 0.95925 1.00584 0.97598 1.20391 0.92149 0.94748 0.86158 0.93416 1.42644 1.12128 1.54491 1.28322 1.19611 0.90016 1.20982 1.05839 0.90296 1.25523 1.01900 1.00521 0.98991 1.69819 1.37184 1.35232 1.20029 0.85203 0.80425 0.76319 0.78208 1.21787 1.22652 1.19086 1.22464 1.01326 0.99366 0.94955 1.22557 0.78839 1.02239 0.99671 1.48132 1.07983 1.56852 1.19776 1.18548 0.85336 0.79306 0.82235 1.90811 1.17840 1.57978 1.77187 1.19955 1.00007 1.00454 0.94258 1.21443 0.94208 0.94165 1.01142 1.21179 1.01056 0.99766 0.90755 1.18606 0.94332 0.94656 0.95248 1.22252 1.02087 1.00655 0.92485 1.22723 0.91701 0.94782 0.97805 1.67530 1.12458 1.06522 1.35644 1.23654 0.96681 0.95152 0.86481 1.19110 0.99081 0.99190 0.96107 1.21432 0.96509 0.96284 0.90020 0.92497 0.91181 0.93468 0.92956 0.91024 0.79812 0.94215 0.91134 0.92941 0.86168 0.90002 0.83487 0.82007 0.81476 0.80508 0.79630 0.83144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 7.61 71.98 0.55 -2.86 16 2 C 0.15 4.09 3.49 44.97 0.16 4.24 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.12 -3.93 4.84 30.67 0.15 -3.78 16 5 C 0.17 6.26 2.73 45.02 0.12 6.38 16 6 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 7 N -0.74 -35.20 5.12 -322.82 -1.65 -36.86 16 8 C -0.23 -12.24 9.93 84.03 0.83 -11.41 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 11 N -0.97 -58.42 13.06 21.65 0.28 -58.13 16 12 Si 0.97 44.76 29.55 68.60 2.03 46.78 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 15 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 16 C -0.14 -4.21 5.31 30.67 0.16 -4.05 16 17 C 0.09 2.03 5.51 86.36 0.48 2.51 16 18 N -0.60 -15.26 2.97 -798.49 -2.37 -17.64 16 19 C 0.56 14.83 7.17 86.76 0.62 15.46 16 20 O -0.56 -17.39 12.35 -3.91 -0.05 -17.44 16 21 C -0.14 -3.18 5.44 -20.09 -0.11 -3.29 16 22 C -0.09 -1.74 7.27 22.30 0.16 -1.58 16 23 C -0.11 -1.76 9.77 22.24 0.22 -1.54 16 24 C -0.02 -0.40 5.75 -21.23 -0.12 -0.52 16 25 C -0.16 -2.06 9.87 22.38 0.22 -1.84 16 26 C 0.07 1.04 11.07 84.10 0.93 1.97 16 27 N -0.51 -9.32 10.30 -195.41 -2.01 -11.33 16 28 C 0.15 2.49 11.05 85.35 0.94 3.43 16 29 C -0.13 -2.41 5.74 -21.32 -0.12 -2.54 16 30 C -0.02 -0.42 9.38 22.81 0.21 -0.21 16 31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.97 6.68 -2.39 -0.02 1.95 16 33 H 0.05 1.45 6.82 -2.39 -0.02 1.43 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.37 19.49 7.80 -92.71 -0.72 18.77 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.05 1.66 7.58 -2.39 -0.02 1.64 16 40 H 0.12 2.31 3.53 -2.39 -0.01 2.30 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.15 2.88 4.94 -2.91 -0.01 2.86 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 44 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 45 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 46 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.15 2.60 7.96 -2.91 -0.02 2.58 16 Total: -1.00 -68.35 372.70 2.37 -65.97 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.28 Total: 32.10 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.87 Total: -3.47 kcal Atomic # 7 Polarization: -118.20 SS G_CDS: -5.76 Total: -123.95 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.05 Total: -17.44 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.35 2.37 -65.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044812606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.988 kcal (2) G-P(sol) polarization free energy of solvation -68.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds