Wall clock time and date at job start Tue Mar 31 2020 22:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70028 * 2 1 4 4 C 1.53184 * 109.58517 * 120.36278 * 2 1 3 5 5 C 1.53047 * 109.31043 * 174.42240 * 4 2 1 6 6 H 1.08995 * 109.44719 * 178.62322 * 5 4 2 7 7 N 1.46495 * 109.46236 * 58.64975 * 5 4 2 8 8 C 1.36939 * 119.99872 * 154.93044 * 7 5 4 9 9 H 1.07999 * 120.00234 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99740 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00182 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46787 * 90.00588 * 12 10 8 14 14 H 1.48495 * 109.47005 * 210.00226 * 12 10 8 15 15 H 1.48498 * 109.47118 * 330.00913 * 12 10 8 16 16 C 1.53041 * 109.53450 * 298.63201 * 5 4 2 17 17 C 1.53190 * 109.31565 * 61.36460 * 16 5 4 18 18 N 1.46930 * 108.89550 * 305.29476 * 17 16 5 19 19 C 1.34767 * 120.63130 * 233.67136 * 18 17 16 20 20 O 1.21566 * 120.00178 * 186.21863 * 19 18 17 21 21 C 1.47778 * 120.00205 * 6.22645 * 19 18 17 22 22 C 1.40647 * 119.69939 * 33.75321 * 21 19 18 23 23 C 1.35842 * 120.87643 * 179.75128 * 22 21 19 24 24 C 1.40400 * 119.84458 * 0.52655 * 23 22 21 25 25 C 1.40631 * 121.97141 * 179.73634 * 24 23 22 26 26 C 1.36212 * 118.73108 * 180.02562 * 25 24 23 27 27 N 1.32593 * 121.89895 * 359.95834 * 26 25 24 28 28 C 1.31242 * 122.74578 * 0.02562 * 27 26 25 29 29 C 1.40544 * 119.88118 * 359.97438 * 28 27 26 30 30 C 1.38564 * 119.69805 * 214.03392 * 21 19 18 31 31 H 1.09004 * 109.47081 * 292.50544 * 1 2 3 32 32 H 1.09000 * 109.47247 * 52.49793 * 1 2 3 33 33 H 1.08996 * 109.47617 * 172.50184 * 1 2 3 34 34 H 1.09000 * 109.50332 * 54.47311 * 4 2 1 35 35 H 1.08994 * 109.50120 * 294.36668 * 4 2 1 36 36 H 0.96998 * 119.99926 * 334.93409 * 7 5 4 37 37 H 0.97003 * 119.99574 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.50128 * 301.41275 * 16 5 4 39 39 H 1.08996 * 109.52538 * 181.33307 * 16 5 4 40 40 H 1.09001 * 109.58431 * 65.14954 * 17 16 5 41 41 H 1.08996 * 109.59372 * 185.43050 * 17 16 5 42 42 H 1.08005 * 119.56162 * 0.02562 * 22 21 19 43 43 H 1.08007 * 120.07734 * 180.23895 * 23 22 21 44 44 H 1.08002 * 120.63693 * 0.02562 * 25 24 23 45 45 H 1.08010 * 119.05138 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.05924 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.34725 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 3.9376 -1.3452 2.0666 7 7 4.1570 0.4896 1.0748 8 6 5.4410 0.7038 1.5002 9 1 6.0191 -0.1135 1.9054 10 6 5.9997 1.9713 1.4095 11 7 5.2954 2.9672 0.9152 12 14 7.7514 2.2633 1.9891 13 1 8.6900 2.0400 0.8602 14 1 7.8855 3.6600 2.4752 15 1 8.0712 1.3222 3.0923 16 6 3.9568 -1.6657 -0.0638 17 6 3.4649 -0.9469 -1.3239 18 7 2.0220 -0.6997 -1.1981 19 6 1.1691 -1.1078 -2.1584 20 8 -0.0053 -0.7996 -2.0993 21 6 1.6614 -1.9302 -3.2832 22 6 2.7012 -2.8528 -3.0690 23 6 3.1687 -3.6243 -4.0846 24 6 2.6184 -3.4962 -5.3699 25 6 3.0719 -4.2680 -6.4545 26 6 2.4911 -4.0893 -7.6735 27 7 1.5147 -3.2124 -7.8627 28 6 1.0407 -2.4588 -6.8984 29 6 1.5714 -2.5652 -5.6013 30 6 1.0985 -1.7811 -4.5405 31 1 -0.3633 0.3934 0.9494 32 1 -0.3634 0.6256 -0.8153 33 1 -0.3634 -1.0188 -0.1341 34 1 1.6030 -1.7255 1.2911 35 1 1.7661 -0.1671 2.1367 36 1 3.6379 1.2236 0.7106 37 1 5.6858 3.8530 0.8522 38 1 3.4982 -2.6529 -0.0056 39 1 5.0410 -1.7701 -0.1043 40 1 3.9902 0.0021 -1.4318 41 1 3.6539 -1.5704 -2.1977 42 1 3.1307 -2.9522 -2.0831 43 1 3.9651 -4.3314 -3.9048 44 1 3.8655 -4.9888 -6.3234 45 1 2.8357 -4.6791 -8.5102 46 1 0.2438 -1.7586 -7.1010 47 1 0.3031 -1.0685 -4.7012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044812607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:55 Heat of formation + Delta-G solvation = 62.225230 kcal Electronic energy + Delta-G solvation = -29557.747660 eV Core-core repulsion = 25706.678177 eV Total energy + Delta-G solvation = -3851.069483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27910 -40.25494 -37.73666 -37.17547 -34.30404 -33.34648 -32.95240 -31.96913 -31.00118 -29.99473 -29.10148 -27.11601 -25.14565 -24.44093 -23.82876 -23.42675 -22.71112 -21.71091 -20.44785 -18.92311 -18.12198 -17.34257 -17.22334 -16.95324 -15.98687 -15.78134 -15.41656 -15.09834 -14.72847 -14.51349 -14.37179 -14.03419 -13.89320 -13.85166 -13.65367 -13.42354 -13.29568 -13.03130 -12.68726 -12.25581 -12.10248 -12.02824 -11.85055 -11.54863 -11.42322 -11.18007 -10.94194 -10.84313 -10.67215 -10.49601 -10.41540 -10.28979 -10.01375 -9.80059 -9.69142 -9.27537 -9.02431 -8.89654 -8.37600 -8.19416 -7.04493 -5.83786 -3.13176 0.00983 0.48684 1.58028 2.42382 3.06883 3.23800 3.37957 3.43791 3.45520 3.82146 4.11457 4.26338 4.41297 4.43900 4.52885 4.57173 4.78957 4.85790 4.96157 5.15809 5.24226 5.30438 5.31679 5.42424 5.43962 5.50772 5.54818 5.61535 5.66440 5.69428 5.71431 5.83664 5.93552 6.04051 6.06614 6.08695 6.13300 6.26007 6.32682 6.36219 6.43304 6.46897 6.55346 6.66129 6.72246 6.78214 6.99396 7.63361 7.65794 7.67651 8.30864 8.34459 9.46014 10.02186 10.36881 11.38496 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003025 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.168765 B = 9253.419418 C =10350.225799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.146 3.854 3 H 0.082 0.918 4 C -0.133 4.133 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.151 4.151 17 C 0.087 3.913 18 N -0.588 5.588 19 C 0.554 3.446 20 O -0.537 6.537 21 C -0.125 4.125 22 C -0.077 4.077 23 C -0.122 4.122 24 C -0.010 4.010 25 C -0.159 4.159 26 C 0.080 3.920 27 N -0.494 5.494 28 C 0.156 3.844 29 C -0.122 4.122 30 C -0.026 4.026 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.886 -14.490 -11.638 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 H 0.100 0.900 4 C -0.172 4.172 5 C 0.064 3.936 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.192 4.192 17 C -0.034 4.034 18 N -0.320 5.320 19 C 0.342 3.658 20 O -0.417 6.417 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.140 4.140 24 C -0.015 4.015 25 C -0.179 4.179 26 C -0.063 4.063 27 N -0.202 5.202 28 C -0.015 4.015 29 C -0.124 4.124 30 C -0.047 4.047 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.170 0.830 46 H 0.183 0.817 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.566 -14.333 -12.383 20.397 hybrid contribution 1.539 0.362 1.085 1.917 sum -6.028 -13.971 -11.298 18.952 Atomic orbital electron populations 1.22178 0.93188 1.03188 1.00748 1.21343 0.94840 0.96162 0.83281 0.89996 1.22250 0.97384 1.00271 0.97329 1.20175 0.90442 0.88154 0.94848 0.93017 1.42511 1.13843 1.04675 1.75365 1.19217 0.89782 0.94162 1.34028 0.91195 1.24731 0.98261 0.95912 1.01843 1.69654 1.36476 1.00642 1.51164 0.86227 0.84766 0.77140 0.78248 1.21771 1.21826 1.20806 1.22546 1.01533 0.97862 0.97275 1.22399 0.79239 1.02770 0.99033 1.48135 1.07701 1.56318 1.19856 1.18206 0.85763 0.79844 0.81951 1.90815 1.16908 1.57388 1.76557 1.20102 0.98501 0.99428 0.94737 1.21470 0.93822 0.93478 1.00815 1.20891 1.01166 1.00437 0.91470 1.18288 0.94278 0.94457 0.94489 1.21929 1.01774 1.00828 0.93327 1.22229 0.92317 0.95151 0.96635 1.67468 1.11645 1.05865 1.35172 1.23296 0.96369 0.94882 0.86956 1.18982 0.98601 0.98918 0.95893 1.21352 0.96853 0.96199 0.90302 0.93741 0.90852 0.92011 0.92061 0.90562 0.78116 0.93460 0.93271 0.90594 0.89599 0.89152 0.83361 0.84513 0.84311 0.82983 0.81701 0.83806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.62 37.16 0.28 -1.81 16 2 C 0.15 2.38 3.20 -67.45 -0.22 2.16 16 3 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 4 C -0.13 -2.10 5.07 -26.61 -0.13 -2.24 16 5 C 0.17 3.12 3.10 -67.89 -0.21 2.91 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 N -0.72 -16.43 4.31 -53.39 -0.23 -16.66 16 8 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 12 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 C -0.15 -2.30 5.43 -26.61 -0.14 -2.45 16 17 C 0.09 1.32 5.24 -3.71 -0.02 1.30 16 18 N -0.59 -9.12 2.98 -166.14 -0.50 -9.62 16 19 C 0.55 8.49 7.18 -12.36 -0.09 8.40 16 20 O -0.54 -9.24 12.39 5.31 0.07 -9.18 16 21 C -0.12 -1.60 5.44 -104.97 -0.57 -2.18 16 22 C -0.08 -0.85 7.27 -39.53 -0.29 -1.14 16 23 C -0.12 -1.18 9.77 -39.63 -0.39 -1.57 16 24 C -0.01 -0.10 5.75 -106.74 -0.61 -0.72 16 25 C -0.16 -1.38 9.87 -39.41 -0.39 -1.77 16 26 C 0.08 0.73 11.07 -17.95 -0.20 0.53 16 27 N -0.49 -5.36 10.30 -13.12 -0.14 -5.49 16 28 C 0.16 1.57 11.05 -16.93 -0.19 1.38 16 29 C -0.12 -1.34 5.74 -106.87 -0.61 -1.95 16 30 C -0.03 -0.31 9.38 -38.75 -0.36 -0.67 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 1.22 6.69 -51.93 -0.35 0.87 16 33 H 0.06 0.98 6.83 -51.93 -0.35 0.62 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.38 9.42 6.06 -40.82 -0.25 9.17 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.05 0.64 7.58 -51.93 -0.39 0.24 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.09 1.59 7.74 -51.93 -0.40 1.19 16 41 H 0.09 1.17 3.54 -51.94 -0.18 0.98 16 42 H 0.15 1.56 4.93 -52.48 -0.26 1.30 16 43 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 46 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 47 H 0.14 1.53 7.96 -52.49 -0.42 1.11 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -30.77 368.48 -10.23 -41.00 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.30 Total: 10.64 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -4.39 Total: -6.55 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.14 Total: -57.97 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.77 -10.23 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044812607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.220 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds