Wall clock time and date at job start Tue Mar 31 2020 22:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70028 * 2 1 4 4 C 1.53184 * 109.58517 * 120.36278 * 2 1 3 5 5 C 1.53047 * 109.31043 * 174.42240 * 4 2 1 6 6 H 1.08995 * 109.44719 * 178.62322 * 5 4 2 7 7 N 1.46495 * 109.46236 * 58.64975 * 5 4 2 8 8 C 1.36939 * 119.99872 * 154.93044 * 7 5 4 9 9 H 1.07999 * 120.00234 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99740 * 179.97438 * 8 7 5 11 11 N 1.31624 * 120.00182 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46787 * 90.00588 * 12 10 8 14 14 H 1.48495 * 109.47005 * 210.00226 * 12 10 8 15 15 H 1.48498 * 109.47118 * 330.00913 * 12 10 8 16 16 C 1.53041 * 109.53450 * 298.63201 * 5 4 2 17 17 C 1.53190 * 109.31565 * 61.36460 * 16 5 4 18 18 N 1.46930 * 108.89550 * 305.29476 * 17 16 5 19 19 C 1.34767 * 120.63130 * 233.67136 * 18 17 16 20 20 O 1.21566 * 120.00178 * 186.21863 * 19 18 17 21 21 C 1.47778 * 120.00205 * 6.22645 * 19 18 17 22 22 C 1.40647 * 119.69939 * 33.75321 * 21 19 18 23 23 C 1.35842 * 120.87643 * 179.75128 * 22 21 19 24 24 C 1.40400 * 119.84458 * 0.52655 * 23 22 21 25 25 C 1.40631 * 121.97141 * 179.73634 * 24 23 22 26 26 C 1.36212 * 118.73108 * 180.02562 * 25 24 23 27 27 N 1.32593 * 121.89895 * 359.95834 * 26 25 24 28 28 C 1.31242 * 122.74578 * 0.02562 * 27 26 25 29 29 C 1.40544 * 119.88118 * 359.97438 * 28 27 26 30 30 C 1.38564 * 119.69805 * 214.03392 * 21 19 18 31 31 H 1.09004 * 109.47081 * 292.50544 * 1 2 3 32 32 H 1.09000 * 109.47247 * 52.49793 * 1 2 3 33 33 H 1.08996 * 109.47617 * 172.50184 * 1 2 3 34 34 H 1.09000 * 109.50332 * 54.47311 * 4 2 1 35 35 H 1.08994 * 109.50120 * 294.36668 * 4 2 1 36 36 H 0.96998 * 119.99926 * 334.93409 * 7 5 4 37 37 H 0.97003 * 119.99574 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.50128 * 301.41275 * 16 5 4 39 39 H 1.08996 * 109.52538 * 181.33307 * 16 5 4 40 40 H 1.09001 * 109.58431 * 65.14954 * 17 16 5 41 41 H 1.08996 * 109.59372 * 185.43050 * 17 16 5 42 42 H 1.08005 * 119.56162 * 0.02562 * 22 21 19 43 43 H 1.08007 * 120.07734 * 180.23895 * 23 22 21 44 44 H 1.08002 * 120.63693 * 0.02562 * 25 24 23 45 45 H 1.08010 * 119.05138 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.05924 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.34725 * 359.97438 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1700 6 1 3.9376 -1.3452 2.0666 7 7 4.1570 0.4896 1.0748 8 6 5.4410 0.7038 1.5002 9 1 6.0191 -0.1135 1.9054 10 6 5.9997 1.9713 1.4095 11 7 5.2954 2.9672 0.9152 12 14 7.7514 2.2633 1.9891 13 1 8.6900 2.0400 0.8602 14 1 7.8855 3.6600 2.4752 15 1 8.0712 1.3222 3.0923 16 6 3.9568 -1.6657 -0.0638 17 6 3.4649 -0.9469 -1.3239 18 7 2.0220 -0.6997 -1.1981 19 6 1.1691 -1.1078 -2.1584 20 8 -0.0053 -0.7996 -2.0993 21 6 1.6614 -1.9302 -3.2832 22 6 2.7012 -2.8528 -3.0690 23 6 3.1687 -3.6243 -4.0846 24 6 2.6184 -3.4962 -5.3699 25 6 3.0719 -4.2680 -6.4545 26 6 2.4911 -4.0893 -7.6735 27 7 1.5147 -3.2124 -7.8627 28 6 1.0407 -2.4588 -6.8984 29 6 1.5714 -2.5652 -5.6013 30 6 1.0985 -1.7811 -4.5405 31 1 -0.3633 0.3934 0.9494 32 1 -0.3634 0.6256 -0.8153 33 1 -0.3634 -1.0188 -0.1341 34 1 1.6030 -1.7255 1.2911 35 1 1.7661 -0.1671 2.1367 36 1 3.6379 1.2236 0.7106 37 1 5.6858 3.8530 0.8522 38 1 3.4982 -2.6529 -0.0056 39 1 5.0410 -1.7701 -0.1043 40 1 3.9902 0.0021 -1.4318 41 1 3.6539 -1.5704 -2.1977 42 1 3.1307 -2.9522 -2.0831 43 1 3.9651 -4.3314 -3.9048 44 1 3.8655 -4.9888 -6.3234 45 1 2.8357 -4.6791 -8.5102 46 1 0.2438 -1.7586 -7.1010 47 1 0.3031 -1.0685 -4.7012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044812607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:54 Heat of formation + Delta-G solvation = 45.054922 kcal Electronic energy + Delta-G solvation = -29558.492220 eV Core-core repulsion = 25706.678177 eV Total energy + Delta-G solvation = -3851.814043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.21789 -41.29337 -38.97380 -38.14717 -35.91441 -34.35177 -33.93917 -33.64179 -31.91844 -31.02439 -30.58814 -28.44437 -26.12677 -25.71203 -25.32165 -24.61969 -23.57120 -22.81608 -21.64321 -20.15253 -19.20299 -19.05235 -18.31252 -17.79151 -17.21686 -16.77922 -16.65506 -16.19917 -16.01137 -15.62741 -15.56459 -15.32331 -15.11319 -15.01623 -14.67808 -14.52993 -14.40849 -14.24069 -13.97922 -13.54102 -13.35306 -13.03772 -12.97328 -12.92941 -12.73986 -12.57507 -12.44884 -12.30226 -12.11821 -11.98501 -11.80155 -11.58834 -11.38975 -11.22335 -10.89861 -10.56622 -10.26885 -10.01346 -9.55011 -9.10057 -8.94733 -7.89726 -5.16934 -0.77381 -0.32965 0.79719 1.48721 1.49708 1.50193 1.58260 1.89091 2.23052 2.59309 3.03763 3.32745 3.44322 3.46553 3.59244 3.67577 3.82638 3.87962 3.90597 3.97423 4.03189 4.05966 4.09852 4.25766 4.33480 4.37470 4.48750 4.63321 4.65239 4.67802 4.76629 4.77630 4.80957 4.89933 4.91843 4.95000 5.05282 5.12202 5.17758 5.26055 5.27577 5.30094 5.36574 5.41313 5.58609 5.60887 5.69886 5.73112 6.32123 6.44318 6.95869 7.09824 7.39143 8.15684 8.38063 9.33681 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.003025 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.168765 B = 9253.419418 C =10350.225799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.122 4.122 5 C 0.165 3.835 6 H 0.052 0.948 7 N -0.732 5.732 8 C -0.228 4.228 9 H 0.079 0.921 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.966 3.034 13 H -0.289 1.289 14 H -0.303 1.303 15 H -0.269 1.269 16 C -0.141 4.141 17 C 0.095 3.905 18 N -0.590 5.590 19 C 0.553 3.447 20 O -0.562 6.562 21 C -0.143 4.143 22 C -0.089 4.089 23 C -0.107 4.107 24 C -0.025 4.025 25 C -0.152 4.152 26 C 0.070 3.930 27 N -0.513 5.513 28 C 0.148 3.852 29 C -0.133 4.133 30 C -0.028 4.028 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.372 0.628 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.119 0.881 42 H 0.156 0.844 43 H 0.170 0.830 44 H 0.172 0.828 45 H 0.179 0.821 46 H 0.183 0.817 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -17.710 -12.379 22.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.161 4.161 5 C 0.057 3.943 6 H 0.070 0.930 7 N -0.373 5.373 8 C -0.360 4.360 9 H 0.097 0.903 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.796 3.204 13 H -0.217 1.217 14 H -0.231 1.231 15 H -0.194 1.194 16 C -0.181 4.181 17 C -0.027 4.027 18 N -0.321 5.321 19 C 0.343 3.657 20 O -0.443 6.443 21 C -0.146 4.146 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.030 4.030 25 C -0.172 4.172 26 C -0.072 4.072 27 N -0.221 5.221 28 C -0.023 4.023 29 C -0.135 4.135 30 C -0.049 4.049 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.205 0.795 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.137 0.863 42 H 0.173 0.827 43 H 0.187 0.813 44 H 0.189 0.811 45 H 0.196 0.804 46 H 0.200 0.800 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.666 -17.618 -13.119 22.954 hybrid contribution 1.189 1.248 1.199 2.100 sum -5.477 -16.369 -11.919 20.976 Atomic orbital electron populations 1.22017 0.92350 1.02766 1.00780 1.21218 0.95347 0.94826 0.84247 0.93239 1.22138 0.95878 1.01396 0.96672 1.20450 0.91577 0.86149 0.96120 0.92978 1.42689 1.13053 1.06420 1.75103 1.19607 0.90760 0.93996 1.31615 0.90336 1.25451 1.01778 0.96125 1.03470 1.69818 1.37985 1.00680 1.53732 0.85247 0.80831 0.76377 0.77953 1.21688 1.23056 1.19430 1.22397 1.01455 0.98851 0.95427 1.22337 0.78635 1.01246 1.00459 1.48128 1.07871 1.56305 1.19800 1.18606 0.85388 0.79570 0.82149 1.90796 1.17937 1.58425 1.77119 1.19977 1.00135 1.00397 0.94061 1.21485 0.93850 0.93865 1.01632 1.21227 1.00935 0.99844 0.90492 1.18635 0.94218 0.94588 0.95551 1.22268 1.01966 1.00584 0.92349 1.22753 0.91739 0.94839 0.97913 1.67516 1.12509 1.06518 1.35580 1.23597 0.96830 0.95211 0.86620 1.19102 0.99232 0.99267 0.95948 1.21409 0.96812 0.96373 0.90338 0.92459 0.92486 0.92083 0.89562 0.91032 0.79518 0.94400 0.89781 0.91080 0.93628 0.86326 0.82677 0.81276 0.81072 0.80384 0.80018 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 7.62 71.98 0.55 -3.23 16 2 C 0.15 4.85 3.20 44.92 0.14 4.99 16 3 H 0.05 1.96 6.64 -2.39 -0.02 1.95 16 4 C -0.12 -3.74 5.07 30.67 0.16 -3.59 16 5 C 0.17 5.77 3.10 45.02 0.14 5.91 16 6 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 7 N -0.73 -33.75 4.31 -322.82 -1.39 -35.14 16 8 C -0.23 -11.76 9.93 84.03 0.83 -10.92 16 9 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 10 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 11 N -0.97 -58.01 13.06 21.65 0.28 -57.73 16 12 Si 0.97 44.76 29.55 68.60 2.03 46.79 16 13 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 16 C -0.14 -4.03 5.43 30.67 0.17 -3.86 16 17 C 0.09 2.83 5.24 86.36 0.45 3.28 16 18 N -0.59 -18.27 2.98 -797.83 -2.38 -20.65 16 19 C 0.55 16.92 7.18 86.77 0.62 17.54 16 20 O -0.56 -19.61 12.39 -3.92 -0.05 -19.65 16 21 C -0.14 -3.56 5.44 -20.09 -0.11 -3.67 16 22 C -0.09 -1.77 7.27 22.30 0.16 -1.61 16 23 C -0.11 -1.72 9.77 22.24 0.22 -1.50 16 24 C -0.02 -0.45 5.75 -21.24 -0.12 -0.57 16 25 C -0.15 -2.11 9.87 22.38 0.22 -1.89 16 26 C 0.07 1.08 11.07 84.11 0.93 2.01 16 27 N -0.51 -10.23 10.30 -195.41 -2.01 -12.24 16 28 C 0.15 2.81 11.05 85.34 0.94 3.75 16 29 C -0.13 -2.75 5.74 -21.32 -0.12 -2.87 16 30 C -0.03 -0.65 9.38 22.81 0.21 -0.44 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.95 6.69 -2.39 -0.02 1.93 16 33 H 0.06 1.90 6.83 -2.39 -0.02 1.88 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.37 18.98 6.06 -92.71 -0.56 18.42 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16 39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 41 H 0.12 2.89 3.54 -2.40 -0.01 2.88 16 42 H 0.16 2.79 4.93 -2.91 -0.01 2.78 16 43 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 45 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 46 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 47 H 0.14 3.13 7.96 -2.91 -0.02 3.11 16 Total: -1.00 -68.24 368.48 2.79 -65.46 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.44 Total: 33.57 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.86 Total: -0.39 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -5.50 Total: -125.76 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.05 Total: -19.65 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.24 2.79 -65.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044812607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.512 kcal (2) G-P(sol) polarization free energy of solvation -68.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds