Wall clock time and date at job start Tue Mar 31 2020 22:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58618 * 2 1 4 4 C 1.53188 * 109.60346 * 120.44061 * 2 1 3 5 5 C 1.53037 * 109.30979 * 65.12859 * 4 2 1 6 6 H 1.08997 * 109.46610 * 301.37060 * 5 4 2 7 7 N 1.46507 * 109.45780 * 181.40054 * 5 4 2 8 8 C 1.36943 * 119.99732 * 154.97357 * 7 5 4 9 9 H 1.07992 * 119.99914 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99637 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00017 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99739 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47141 * 90.00027 * 12 10 8 14 14 H 1.48501 * 109.47470 * 329.99931 * 12 10 8 15 15 H 1.48503 * 109.47305 * 209.99748 * 12 10 8 16 16 C 1.53035 * 109.52863 * 61.39069 * 5 4 2 17 17 C 1.53192 * 109.31324 * 298.62808 * 16 5 4 18 18 N 1.46925 * 109.58477 * 239.72538 * 2 1 3 19 19 C 1.34780 * 120.63533 * 113.79541 * 18 2 1 20 20 O 1.21505 * 119.99423 * 359.86717 * 19 18 2 21 21 C 1.48272 * 120.00242 * 179.86435 * 19 18 2 22 22 C 1.40280 * 119.24133 * 203.10358 * 21 19 18 23 23 C 1.36503 * 119.82456 * 180.02562 * 22 21 19 24 24 C 1.40753 * 118.23925 * 359.97438 * 23 22 21 25 25 C 1.40422 * 121.28670 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.65133 * 179.97438 * 25 24 23 27 27 C 1.39430 * 120.91530 * 0.02562 * 26 25 24 28 28 C 1.36001 * 121.08565 * 359.97438 * 27 26 25 29 29 C 1.40821 * 119.73503 * 0.02562 * 28 27 26 30 30 N 1.31874 * 119.24133 * 22.83429 * 21 19 18 31 31 H 1.09000 * 109.46635 * 180.27709 * 1 2 3 32 32 H 1.09002 * 109.46599 * 300.27749 * 1 2 3 33 33 H 1.09000 * 109.47096 * 60.27593 * 1 2 3 34 34 H 1.09003 * 109.48316 * 305.18622 * 4 2 1 35 35 H 1.08994 * 109.51369 * 185.08715 * 4 2 1 36 36 H 0.97001 * 119.99863 * 334.97758 * 7 5 4 37 37 H 0.96995 * 120.00573 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.49978 * 58.57715 * 16 5 4 39 39 H 1.09000 * 109.50494 * 178.67176 * 16 5 4 40 40 H 1.08997 * 109.58943 * 174.42560 * 17 16 5 41 41 H 1.09001 * 109.58345 * 294.84467 * 17 16 5 42 42 H 1.08002 * 120.08757 * 359.97438 * 22 21 19 43 43 H 1.08001 * 120.88145 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.17369 * 359.96917 * 25 24 23 45 45 H 1.07997 * 119.54080 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.45971 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.13194 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0440 -0.7311 1.2442 5 6 1.6416 -2.2056 1.1670 6 1 0.5566 -2.2828 1.0961 7 7 2.1026 -2.9010 2.3713 8 6 1.4646 -4.0373 2.7923 9 1 0.6221 -4.4210 2.2364 10 6 1.9011 -4.6958 3.9337 11 7 2.9283 -4.2284 4.6109 12 14 1.0314 -6.2462 4.5076 13 1 1.6686 -7.4321 3.8807 14 1 -0.3990 -6.1864 4.1130 15 1 1.1333 -6.3528 5.9852 16 6 2.2801 -2.8463 -0.0674 17 6 1.7692 -2.1391 -1.3267 18 7 2.0225 -0.6979 -1.1955 19 6 2.6936 -0.0286 -2.1538 20 8 2.8942 1.1638 -2.0348 21 6 3.1870 -0.7475 -3.3531 22 6 4.2599 -0.2111 -4.0804 23 6 4.7233 -0.8628 -5.1867 24 6 4.0979 -2.0668 -5.5612 25 6 4.5231 -2.7898 -6.6874 26 6 3.8945 -3.9510 -7.0190 27 6 2.8323 -4.4338 -6.2557 28 6 2.3931 -3.7608 -5.1585 29 6 3.0169 -2.5557 -4.7822 30 7 2.6105 -1.8791 -3.7083 31 1 -0.3632 -1.0277 0.0050 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 1.6081 -0.2812 2.1362 35 1 3.1301 -0.6524 1.2900 36 1 2.8596 -2.5565 2.8705 37 1 3.3802 -3.4236 4.3128 38 1 3.3640 -2.7474 -0.0091 39 1 2.0124 -3.9021 -0.1091 40 1 2.2944 -2.5245 -2.2007 41 1 0.6987 -2.3136 -1.4349 42 1 4.7175 0.7154 -3.7663 43 1 5.5480 -0.4650 -5.7595 44 1 5.3443 -2.4266 -7.2873 45 1 4.2232 -4.5059 -7.8852 46 1 2.3503 -5.3574 -6.5404 47 1 1.5692 -4.1491 -4.5781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:15 Heat of formation + Delta-G solvation = 49.364323 kcal Electronic energy + Delta-G solvation = -29348.527723 eV Core-core repulsion = 25496.900549 eV Total energy + Delta-G solvation = -3851.627174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.43702 -40.00053 -37.86758 -37.06620 -34.81487 -34.00975 -32.47490 -31.86860 -30.86468 -30.30947 -29.06437 -27.20619 -25.60463 -24.11508 -23.79454 -23.04268 -22.37394 -22.03222 -20.85508 -18.75535 -18.30240 -17.83826 -17.30605 -17.17085 -16.29128 -15.49393 -15.42421 -14.99847 -14.71804 -14.63440 -14.44389 -14.20900 -14.06673 -13.65826 -13.64510 -13.50950 -13.34837 -13.00315 -12.72678 -12.56844 -12.15274 -12.00109 -11.88312 -11.78781 -11.53123 -11.22131 -10.95194 -10.81593 -10.77935 -10.50605 -10.48880 -10.25429 -10.01862 -9.83637 -9.30993 -9.15206 -9.12384 -8.82944 -8.58957 -8.46243 -7.00777 -6.08438 -3.08059 -0.11416 0.36137 1.59427 2.20722 2.90841 3.01401 3.51760 3.56671 3.70641 3.71396 3.84765 4.19188 4.34105 4.45229 4.50927 4.67503 4.72511 4.79285 4.95616 5.04782 5.09235 5.20129 5.33649 5.38635 5.43326 5.54108 5.56978 5.60513 5.65305 5.69451 5.74046 5.80286 5.90481 5.93629 5.97357 6.05004 6.08404 6.11817 6.26170 6.34339 6.40407 6.42009 6.49418 6.50424 6.67779 6.91218 7.04784 7.33176 7.51795 7.82707 8.12061 8.77262 9.24814 10.11249 10.26845 11.40083 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003114 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.055663 B = 8990.025249 C =10552.770206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.096 0.904 4 C -0.134 4.134 5 C 0.183 3.817 6 H 0.052 0.948 7 N -0.736 5.736 8 C -0.328 4.328 9 H 0.064 0.936 10 C -0.046 4.046 11 N -0.945 5.945 12 Si 1.082 2.918 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.150 4.150 17 C 0.078 3.922 18 N -0.575 5.575 19 C 0.566 3.434 20 O -0.542 6.542 21 C 0.124 3.876 22 C -0.125 4.125 23 C -0.061 4.061 24 C -0.088 4.088 25 C -0.102 4.102 26 C -0.108 4.108 27 C -0.104 4.104 28 C -0.084 4.084 29 C 0.118 3.882 30 N -0.430 5.430 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.131 0.869 41 H 0.065 0.935 42 H 0.149 0.851 43 H 0.146 0.854 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.247 4.903 -25.360 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.114 0.886 4 C -0.173 4.173 5 C 0.073 3.927 6 H 0.070 0.930 7 N -0.378 5.378 8 C -0.459 4.459 9 H 0.082 0.918 10 C -0.244 4.244 11 N -0.591 5.591 12 Si 0.913 3.087 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.191 4.191 17 C -0.045 4.045 18 N -0.305 5.305 19 C 0.352 3.648 20 O -0.419 6.419 21 C -0.029 4.029 22 C -0.145 4.145 23 C -0.087 4.087 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.102 4.102 29 C -0.005 4.005 30 N -0.142 5.142 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.199 0.801 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.147 0.853 41 H 0.084 0.916 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.150 0.850 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.402 3.843 -23.731 24.043 hybrid contribution 0.959 1.423 -1.492 2.274 sum 1.361 5.266 -25.222 25.802 Atomic orbital electron populations 1.22133 0.94722 1.02938 1.01939 1.21268 0.94302 0.97069 0.83743 0.88553 1.22221 1.01169 0.97425 0.96450 1.20169 0.96899 0.88819 0.86793 0.92989 1.42463 1.37737 1.29992 1.27619 1.20058 1.12716 1.03070 1.10102 0.91763 1.25745 0.99514 1.04416 0.94688 1.70836 1.22251 1.24456 1.41542 0.83211 0.74377 0.74881 0.76263 1.22387 1.22159 1.21439 1.22662 1.00663 1.00594 0.95218 1.22884 1.01915 0.78249 1.01403 1.48134 1.52604 1.10427 1.19341 1.17928 0.78471 0.86228 0.82194 1.90759 1.58557 1.14140 1.78451 1.21407 0.94219 0.91376 0.95850 1.21708 0.96297 1.01405 0.95135 1.21460 0.98522 0.93058 0.95680 1.18968 0.96890 0.96211 0.96981 1.21000 1.00014 0.95246 0.95762 1.21013 0.95791 0.96079 0.99752 1.20959 0.96634 1.00027 0.94768 1.20933 0.99703 0.92654 0.96933 1.19030 0.94155 0.95787 0.91512 1.68006 1.28063 1.05477 1.12626 0.91546 0.91259 0.92760 0.90579 0.92025 0.80135 0.93352 0.92875 0.90823 0.85305 0.91645 0.83308 0.83636 0.85049 0.85343 0.84979 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.03 37.16 0.34 -1.85 16 2 C 0.14 2.14 3.21 -67.60 -0.22 1.93 16 3 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 4 C -0.13 -2.32 5.02 -26.61 -0.13 -2.45 16 5 C 0.18 3.66 2.52 -67.89 -0.17 3.49 16 6 H 0.05 1.07 6.43 -51.93 -0.33 0.73 16 7 N -0.74 -18.48 5.12 -53.39 -0.27 -18.75 16 8 C -0.33 -9.19 9.93 -15.06 -0.15 -9.34 16 9 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 11 N -0.95 -29.43 13.70 55.49 0.76 -28.67 16 12 Si 1.08 26.03 29.92 -169.99 -5.09 20.95 16 13 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 C -0.15 -2.76 5.66 -26.61 -0.15 -2.91 16 17 C 0.08 1.20 5.56 -3.71 -0.02 1.18 16 18 N -0.57 -8.96 2.68 -166.17 -0.45 -9.41 16 19 C 0.57 8.98 7.60 -12.13 -0.09 8.89 16 20 O -0.54 -9.59 15.93 5.36 0.09 -9.51 16 21 C 0.12 1.71 6.44 -82.96 -0.53 1.18 16 22 C -0.12 -1.41 9.53 -39.44 -0.38 -1.78 16 23 C -0.06 -0.55 9.88 -39.26 -0.39 -0.94 16 24 C -0.09 -0.87 5.75 -106.71 -0.61 -1.49 16 25 C -0.10 -0.74 9.77 -39.51 -0.39 -1.13 16 26 C -0.11 -0.72 9.96 -39.89 -0.40 -1.11 16 27 C -0.10 -0.76 9.94 -39.94 -0.40 -1.16 16 28 C -0.08 -0.80 9.99 -39.41 -0.39 -1.19 16 29 C 0.12 1.36 6.61 -84.85 -0.56 0.80 16 30 N -0.43 -5.71 6.33 -7.54 -0.05 -5.75 16 31 H 0.07 0.95 5.72 -51.93 -0.30 0.65 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.37 9.58 6.63 -40.82 -0.27 9.31 16 37 H 0.26 7.85 6.77 -40.82 -0.28 7.57 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.13 1.92 4.02 -77.74 -0.31 1.61 16 41 H 0.07 0.96 7.50 -51.93 -0.39 0.58 16 42 H 0.15 1.53 7.78 -52.49 -0.41 1.12 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -33.93 375.71 -10.60 -44.53 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.51 Total: 10.28 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -4.74 Total: -9.33 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.01 Total: -62.58 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.93 -10.60 -44.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.892 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds