Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.58618 * 2 1 4 4 C 1.53188 * 109.60346 * 120.44061 * 2 1 3 5 5 C 1.53037 * 109.30979 * 65.12859 * 4 2 1 6 6 H 1.08997 * 109.46610 * 301.37060 * 5 4 2 7 7 N 1.46507 * 109.45780 * 181.40054 * 5 4 2 8 8 C 1.36943 * 119.99732 * 154.97357 * 7 5 4 9 9 H 1.07992 * 119.99914 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99637 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00017 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99739 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47141 * 90.00027 * 12 10 8 14 14 H 1.48501 * 109.47470 * 329.99931 * 12 10 8 15 15 H 1.48503 * 109.47305 * 209.99748 * 12 10 8 16 16 C 1.53035 * 109.52863 * 61.39069 * 5 4 2 17 17 C 1.53192 * 109.31324 * 298.62808 * 16 5 4 18 18 N 1.46925 * 109.58477 * 239.72538 * 2 1 3 19 19 C 1.34780 * 120.63533 * 113.79541 * 18 2 1 20 20 O 1.21505 * 119.99423 * 359.86717 * 19 18 2 21 21 C 1.48272 * 120.00242 * 179.86435 * 19 18 2 22 22 C 1.40280 * 119.24133 * 203.10358 * 21 19 18 23 23 C 1.36503 * 119.82456 * 180.02562 * 22 21 19 24 24 C 1.40753 * 118.23925 * 359.97438 * 23 22 21 25 25 C 1.40422 * 121.28670 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.65133 * 179.97438 * 25 24 23 27 27 C 1.39430 * 120.91530 * 0.02562 * 26 25 24 28 28 C 1.36001 * 121.08565 * 359.97438 * 27 26 25 29 29 C 1.40821 * 119.73503 * 0.02562 * 28 27 26 30 30 N 1.31874 * 119.24133 * 22.83429 * 21 19 18 31 31 H 1.09000 * 109.46635 * 180.27709 * 1 2 3 32 32 H 1.09002 * 109.46599 * 300.27749 * 1 2 3 33 33 H 1.09000 * 109.47096 * 60.27593 * 1 2 3 34 34 H 1.09003 * 109.48316 * 305.18622 * 4 2 1 35 35 H 1.08994 * 109.51369 * 185.08715 * 4 2 1 36 36 H 0.97001 * 119.99863 * 334.97758 * 7 5 4 37 37 H 0.96995 * 120.00573 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.49978 * 58.57715 * 16 5 4 39 39 H 1.09000 * 109.50494 * 178.67176 * 16 5 4 40 40 H 1.08997 * 109.58943 * 174.42560 * 17 16 5 41 41 H 1.09001 * 109.58345 * 294.84467 * 17 16 5 42 42 H 1.08002 * 120.08757 * 359.97438 * 22 21 19 43 43 H 1.08001 * 120.88145 * 179.97438 * 23 22 21 44 44 H 1.07994 * 120.17369 * 359.96917 * 25 24 23 45 45 H 1.07997 * 119.54080 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.45971 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.13194 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0440 -0.7311 1.2442 5 6 1.6416 -2.2056 1.1670 6 1 0.5566 -2.2828 1.0961 7 7 2.1026 -2.9010 2.3713 8 6 1.4646 -4.0373 2.7923 9 1 0.6221 -4.4210 2.2364 10 6 1.9011 -4.6958 3.9337 11 7 2.9283 -4.2284 4.6109 12 14 1.0314 -6.2462 4.5076 13 1 1.6686 -7.4321 3.8807 14 1 -0.3990 -6.1864 4.1130 15 1 1.1333 -6.3528 5.9852 16 6 2.2801 -2.8463 -0.0674 17 6 1.7692 -2.1391 -1.3267 18 7 2.0225 -0.6979 -1.1955 19 6 2.6936 -0.0286 -2.1538 20 8 2.8942 1.1638 -2.0348 21 6 3.1870 -0.7475 -3.3531 22 6 4.2599 -0.2111 -4.0804 23 6 4.7233 -0.8628 -5.1867 24 6 4.0979 -2.0668 -5.5612 25 6 4.5231 -2.7898 -6.6874 26 6 3.8945 -3.9510 -7.0190 27 6 2.8323 -4.4338 -6.2557 28 6 2.3931 -3.7608 -5.1585 29 6 3.0169 -2.5557 -4.7822 30 7 2.6105 -1.8791 -3.7083 31 1 -0.3632 -1.0277 0.0050 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 1.6081 -0.2812 2.1362 35 1 3.1301 -0.6524 1.2900 36 1 2.8596 -2.5565 2.8705 37 1 3.3802 -3.4236 4.3128 38 1 3.3640 -2.7474 -0.0091 39 1 2.0124 -3.9021 -0.1091 40 1 2.2944 -2.5245 -2.2007 41 1 0.6987 -2.3136 -1.4349 42 1 4.7175 0.7154 -3.7663 43 1 5.5480 -0.4650 -5.7595 44 1 5.3443 -2.4266 -7.2873 45 1 4.2232 -4.5059 -7.8852 46 1 2.3503 -5.3574 -6.5404 47 1 1.5692 -4.1491 -4.5781 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044831757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = 29.584202 kcal Electronic energy + Delta-G solvation = -29349.385454 eV Core-core repulsion = 25496.900549 eV Total energy + Delta-G solvation = -3852.484904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.33240 -41.11970 -39.17563 -37.91656 -36.59354 -34.87395 -33.92088 -33.42759 -31.69326 -31.07347 -30.73445 -28.64512 -26.55562 -25.70380 -24.83583 -24.52636 -23.36686 -23.07788 -22.19701 -20.05496 -19.32139 -19.07823 -18.88548 -18.07805 -17.52149 -16.60517 -16.43962 -16.39402 -16.09701 -15.67668 -15.50265 -15.42839 -15.32179 -15.04733 -14.92590 -14.59108 -14.40208 -14.10432 -14.00998 -13.90836 -13.36334 -13.05674 -12.82333 -12.71798 -12.66893 -12.49697 -12.47827 -12.36174 -12.16353 -12.04128 -11.87125 -11.59943 -11.53398 -11.44633 -11.08420 -10.96336 -10.20561 -9.95285 -9.72368 -9.28413 -9.09941 -8.38468 -5.32437 -0.88036 -0.37028 0.88411 1.31779 1.57939 1.68827 1.73892 1.82780 2.09366 2.71123 2.81956 3.02292 3.40808 3.42435 3.56577 3.58749 3.72280 3.79598 3.82653 3.97937 4.02765 4.10718 4.14954 4.23254 4.26432 4.36304 4.41786 4.46931 4.47173 4.57405 4.73258 4.74870 4.84487 4.87069 4.91952 4.94936 4.97113 5.04661 5.11997 5.16075 5.20403 5.36891 5.41315 5.43049 5.48246 5.58309 5.62249 5.85549 6.21673 6.49182 6.50980 6.91455 7.09004 7.98919 8.12088 9.13414 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.003114 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.055663 B = 8990.025249 C =10552.770206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 H 0.096 0.904 4 C -0.123 4.123 5 C 0.181 3.819 6 H 0.052 0.948 7 N -0.750 5.750 8 C -0.324 4.324 9 H 0.068 0.932 10 C -0.107 4.107 11 N -0.978 5.978 12 Si 1.129 2.871 13 H -0.285 1.285 14 H -0.271 1.271 15 H -0.295 1.295 16 C -0.138 4.138 17 C 0.091 3.909 18 N -0.579 5.579 19 C 0.563 3.437 20 O -0.566 6.566 21 C 0.097 3.903 22 C -0.144 4.144 23 C -0.043 4.043 24 C -0.101 4.101 25 C -0.100 4.100 26 C -0.104 4.104 27 C -0.092 4.092 28 C -0.111 4.111 29 C 0.093 3.907 30 N -0.448 5.448 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.356 0.644 37 H 0.243 0.757 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.152 0.848 43 H 0.186 0.814 44 H 0.165 0.835 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 3.847 -28.785 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.161 4.161 5 C 0.073 3.927 6 H 0.070 0.930 7 N -0.391 5.391 8 C -0.456 4.456 9 H 0.086 0.914 10 C -0.298 4.298 11 N -0.627 5.627 12 Si 0.954 3.046 13 H -0.212 1.212 14 H -0.196 1.196 15 H -0.221 1.221 16 C -0.179 4.179 17 C -0.031 4.031 18 N -0.309 5.309 19 C 0.351 3.649 20 O -0.446 6.446 21 C -0.054 4.054 22 C -0.164 4.164 23 C -0.069 4.069 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.130 4.130 29 C -0.030 4.030 30 N -0.161 5.161 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.188 0.812 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.157 0.843 41 H 0.093 0.907 42 H 0.169 0.831 43 H 0.203 0.797 44 H 0.182 0.818 45 H 0.181 0.819 46 H 0.176 0.824 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.315 2.811 -27.210 27.357 hybrid contribution 1.014 1.702 -0.645 2.083 sum 1.329 4.513 -27.855 28.249 Atomic orbital electron populations 1.22077 0.93068 1.02828 1.03036 1.21228 0.95528 0.96553 0.82784 0.88628 1.22079 1.00429 0.95849 0.97792 1.20360 0.96778 0.90057 0.85542 0.93015 1.42688 1.37436 1.29847 1.29099 1.20390 1.12222 1.03382 1.09578 0.91377 1.27188 0.99833 1.07336 0.95415 1.70955 1.24027 1.24863 1.42823 0.82602 0.74742 0.71846 0.75381 1.21243 1.19607 1.22144 1.22460 0.99415 0.99988 0.96022 1.22799 1.02405 0.77983 0.99932 1.48176 1.52837 1.10373 1.19476 1.18330 0.77698 0.86111 0.82764 1.90723 1.59414 1.15192 1.79250 1.21191 0.95938 0.92365 0.95905 1.21784 0.96349 1.02073 0.96224 1.21887 0.98450 0.92082 0.94468 1.19293 0.96481 0.96806 0.97719 1.21403 1.00600 0.95040 0.94816 1.21480 0.94707 0.95805 1.00197 1.21364 0.96215 1.00263 0.93342 1.21082 1.00586 0.92847 0.98456 1.19405 0.95410 0.96492 0.91678 1.67744 1.28731 1.05632 1.13994 0.92155 0.89987 0.91860 0.90474 0.93227 0.81226 0.94705 0.94571 0.92188 0.84301 0.90748 0.83073 0.79704 0.81778 0.81907 0.82378 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.03 71.98 0.65 -3.44 16 2 C 0.14 4.43 3.21 44.97 0.14 4.58 16 3 H 0.10 3.04 7.00 -2.39 -0.02 3.03 16 4 C -0.12 -4.37 5.02 30.67 0.15 -4.22 16 5 C 0.18 7.41 2.52 45.01 0.11 7.52 16 6 H 0.05 2.14 6.43 -2.39 -0.02 2.13 16 7 N -0.75 -38.72 5.12 -322.82 -1.65 -40.38 16 8 C -0.32 -18.37 9.93 84.03 0.83 -17.53 16 9 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 10 C -0.11 -6.29 5.50 84.86 0.47 -5.82 16 11 N -0.98 -62.42 13.70 21.65 0.30 -62.13 16 12 Si 1.13 52.52 29.92 68.60 2.05 54.57 16 13 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 16 C -0.14 -5.23 5.66 30.67 0.17 -5.06 16 17 C 0.09 2.86 5.56 86.36 0.48 3.34 16 18 N -0.58 -18.45 2.68 -797.92 -2.14 -20.59 16 19 C 0.56 18.41 7.60 86.91 0.66 19.07 16 20 O -0.57 -20.64 15.93 -3.73 -0.06 -20.70 16 21 C 0.10 2.74 6.44 42.31 0.27 3.01 16 22 C -0.14 -3.19 9.53 22.36 0.21 -2.98 16 23 C -0.04 -0.69 9.88 22.48 0.22 -0.46 16 24 C -0.10 -1.77 5.75 -21.22 -0.12 -1.89 16 25 C -0.10 -1.06 9.77 22.31 0.22 -0.85 16 26 C -0.10 -0.93 9.96 22.07 0.22 -0.71 16 27 C -0.09 -1.07 9.94 22.04 0.22 -0.85 16 28 C -0.11 -2.00 9.99 22.38 0.22 -1.78 16 29 C 0.09 2.08 6.61 40.47 0.27 2.35 16 30 N -0.45 -12.06 6.33 -177.77 -1.13 -13.18 16 31 H 0.06 1.69 5.72 -2.39 -0.01 1.67 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.36 19.50 6.63 -92.71 -0.61 18.89 16 37 H 0.24 15.52 6.77 -92.71 -0.63 14.89 16 38 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.14 4.25 4.02 -53.35 -0.21 4.03 16 41 H 0.07 2.19 7.50 -2.39 -0.02 2.18 16 42 H 0.15 3.14 7.78 -2.91 -0.02 3.11 16 43 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.16 0.37 8.06 -2.91 -0.02 0.34 16 46 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 47 H 0.14 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -76.01 375.71 3.10 -72.91 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: 0.32 Total: 35.21 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.41 Total: -5.71 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -4.62 Total: -136.27 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 52.52 SS G_CDS: 2.05 Total: 54.57 kcal Total: -76.01 3.10 -72.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.490 kcal (2) G-P(sol) polarization free energy of solvation -76.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds