Wall clock time and date at job start Tue Mar 31 2020 22:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.70301 * 2 1 4 4 C 1.52766 * 109.51069 * 239.88795 * 2 1 3 5 5 C 1.53045 * 109.38613 * 185.70529 * 4 2 1 6 6 H 1.09001 * 109.45049 * 181.25070 * 5 4 2 7 7 N 1.46501 * 109.45796 * 301.22168 * 5 4 2 8 8 C 1.36935 * 119.99568 * 205.06512 * 7 5 4 9 9 H 1.07997 * 120.00496 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99754 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00224 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 120.00126 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47027 * 89.99919 * 12 10 8 14 14 H 1.48505 * 109.47451 * 210.00145 * 12 10 8 15 15 H 1.48499 * 109.47209 * 329.99705 * 12 10 8 16 16 C 1.53045 * 109.53384 * 61.23679 * 5 4 2 17 17 C 1.53192 * 109.31456 * 298.63662 * 16 5 4 18 18 N 1.46920 * 108.77506 * 54.63684 * 17 16 5 19 19 C 1.34784 * 120.63012 * 126.36663 * 18 17 16 20 20 O 1.21500 * 119.99898 * 187.77036 * 19 18 17 21 21 C 1.48269 * 119.99802 * 7.77611 * 19 18 17 22 22 C 1.40277 * 119.24002 * 190.93939 * 21 19 18 23 23 C 1.36506 * 119.82070 * 179.97438 * 22 21 19 24 24 C 1.40760 * 118.23751 * 0.02562 * 23 22 21 25 25 C 1.40424 * 121.27185 * 180.02562 * 24 23 22 26 26 C 1.36133 * 119.64840 * 179.76027 * 25 24 23 27 27 C 1.39436 * 120.91174 * 0.47633 * 26 25 24 28 28 C 1.35994 * 121.08630 * 359.49576 * 27 26 25 29 29 C 1.40824 * 119.73822 * 0.25905 * 28 27 26 30 30 N 1.31881 * 119.24157 * 10.91692 * 21 19 18 31 31 H 1.08988 * 109.47073 * 302.82160 * 1 2 3 32 32 H 1.08998 * 109.46987 * 62.82430 * 1 2 3 33 33 H 1.09000 * 109.46956 * 182.81915 * 1 2 3 34 34 H 1.09002 * 109.56730 * 65.66980 * 4 2 1 35 35 H 1.09003 * 109.38573 * 305.63435 * 4 2 1 36 36 H 0.97002 * 119.99932 * 25.06432 * 7 5 4 37 37 H 0.96995 * 120.00442 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.49119 * 178.68351 * 16 5 4 39 39 H 1.09004 * 109.52065 * 58.60957 * 16 5 4 40 40 H 1.08999 * 109.58640 * 294.84758 * 17 16 5 41 41 H 1.09001 * 109.69967 * 174.49449 * 17 16 5 42 42 H 1.08005 * 120.09315 * 0.02610 * 22 21 19 43 43 H 1.07995 * 120.88111 * 179.97438 * 23 22 21 44 44 H 1.08001 * 120.17727 * 359.95255 * 25 24 23 45 45 H 1.08000 * 119.54262 * 180.24698 * 26 25 24 46 46 H 1.08001 * 119.45367 * 179.77281 * 27 26 25 47 47 H 1.07999 * 120.12894 * 180.23417 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5639 -0.8461 -1.1728 6 1 3.9312 -1.3416 -2.0715 7 7 4.1578 0.4895 -1.0745 8 6 5.4417 0.7009 -1.5009 9 1 6.0164 -0.1168 -1.9101 10 6 6.0043 1.9665 -1.4082 11 7 7.2383 2.1699 -1.8185 12 14 5.0101 3.3811 -0.7012 13 1 5.2229 3.4505 0.7669 14 1 5.4485 4.6551 -1.3257 15 1 3.5686 3.1623 -0.9827 16 6 3.9523 -1.6686 0.0580 17 6 3.4644 -0.9520 1.3210 18 7 2.0226 -0.6996 1.1944 19 6 1.1673 -1.1072 2.1531 20 8 -0.0314 -1.0206 1.9746 21 6 1.6893 -1.6611 3.4255 22 6 0.8041 -2.2907 4.3130 23 6 1.2720 -2.8053 5.4876 24 6 2.6459 -2.6823 5.7681 25 6 3.1953 -3.1890 6.9569 26 6 4.5296 -3.0562 7.1924 27 6 5.3587 -2.4144 6.2732 28 6 4.8623 -1.9117 5.1112 29 6 3.4881 -2.0333 4.8281 30 7 2.9753 -1.5509 3.6966 31 1 -0.3633 0.5570 0.8635 32 1 -0.3633 0.4694 -0.9142 33 1 -0.3633 -1.0264 0.0505 34 1 1.7632 -0.1564 -2.1350 35 1 1.5963 -1.7168 -1.2944 36 1 3.6414 1.2241 -0.7073 37 1 7.6316 3.0542 -1.7534 38 1 5.0363 -1.7761 0.0963 39 1 3.4909 -2.6544 -0.0023 40 1 3.9929 -0.0050 1.4310 41 1 3.6506 -1.5779 2.1937 42 1 -0.2447 -2.3689 4.0674 43 1 0.6057 -3.2932 6.1835 44 1 2.5633 -3.6843 7.6792 45 1 4.9510 -3.4500 8.1054 46 1 6.4133 -2.3188 6.4856 47 1 5.5192 -1.4207 4.4085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044831760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:17 Heat of formation + Delta-G solvation = 54.060757 kcal Electronic energy + Delta-G solvation = -29971.151979 eV Core-core repulsion = 26119.728458 eV Total energy + Delta-G solvation = -3851.423521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.34518 -41.20750 -39.07839 -37.94658 -36.07051 -34.82022 -33.87153 -33.69983 -31.70522 -31.39379 -30.91891 -28.53624 -26.39143 -25.59393 -24.91349 -24.77936 -23.39745 -22.93014 -21.72818 -20.17186 -19.81763 -19.03056 -18.47503 -17.93345 -17.07490 -16.86248 -16.63386 -16.42960 -16.01540 -15.69081 -15.41730 -15.29276 -15.08962 -15.05884 -14.82451 -14.64769 -14.45082 -14.09722 -14.05788 -13.70213 -13.43860 -13.12160 -13.06398 -12.91090 -12.64609 -12.61445 -12.45835 -12.42106 -12.11138 -12.01328 -11.98263 -11.76957 -11.58595 -11.45502 -11.04921 -10.59694 -9.91390 -9.86633 -9.57981 -9.30295 -9.21832 -8.01946 -5.33219 -0.85600 -0.34157 0.90390 1.33202 1.34930 1.37340 1.41335 1.84966 2.18127 2.45751 2.88442 3.06320 3.29940 3.48325 3.56965 3.59132 3.79981 3.83613 3.88836 3.93229 4.05146 4.11230 4.24485 4.33749 4.35269 4.38479 4.41635 4.50940 4.57768 4.76911 4.79544 4.87440 4.90938 4.95779 5.01035 5.03887 5.08244 5.12929 5.18198 5.26415 5.31618 5.36907 5.38893 5.47617 5.54469 5.72126 5.79833 5.88086 6.22281 6.34860 6.57780 7.04116 7.08232 7.84923 8.03619 9.19917 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011357 B = 0.003955 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.866167 B = 7077.734406 C = 8661.136072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.137 3.863 3 H 0.054 0.946 4 C -0.124 4.124 5 C 0.170 3.830 6 H 0.051 0.949 7 N -0.746 5.746 8 C -0.218 4.218 9 H 0.062 0.938 10 C -0.057 4.057 11 N -0.982 5.982 12 Si 0.939 3.061 13 H -0.285 1.285 14 H -0.294 1.294 15 H -0.258 1.258 16 C -0.141 4.141 17 C 0.092 3.908 18 N -0.580 5.580 19 C 0.561 3.439 20 O -0.546 6.546 21 C 0.096 3.904 22 C -0.137 4.137 23 C -0.043 4.043 24 C -0.100 4.100 25 C -0.097 4.097 26 C -0.105 4.105 27 C -0.093 4.093 28 C -0.117 4.117 29 C 0.093 3.907 30 N -0.456 5.456 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.361 0.639 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.042 0.958 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.188 0.812 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.154 0.846 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.992 -14.586 21.068 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.034 3.966 3 H 0.072 0.928 4 C -0.163 4.163 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.390 5.390 8 C -0.349 4.349 9 H 0.080 0.920 10 C -0.249 4.249 11 N -0.633 5.633 12 Si 0.768 3.232 13 H -0.212 1.212 14 H -0.221 1.221 15 H -0.183 1.183 16 C -0.182 4.182 17 C -0.030 4.030 18 N -0.311 5.311 19 C 0.348 3.652 20 O -0.425 6.425 21 C -0.056 4.056 22 C -0.158 4.158 23 C -0.068 4.068 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.112 4.112 28 C -0.135 4.135 29 C -0.029 4.029 30 N -0.168 5.168 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.195 0.805 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.205 0.795 44 H 0.186 0.814 45 H 0.182 0.818 46 H 0.172 0.828 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.808 -14.160 20.286 27.858 hybrid contribution -0.121 1.205 0.198 1.227 sum -12.929 -12.955 20.485 27.470 Atomic orbital electron populations 1.22075 0.91472 1.03331 1.00957 1.21267 0.96214 0.94675 0.84469 0.92849 1.22103 0.95005 1.01964 0.97212 1.20417 0.91955 0.85274 0.96102 0.93081 1.42847 1.12785 1.07210 1.76154 1.19038 0.89372 0.94924 1.31570 0.92004 1.25291 0.97089 0.99703 1.02777 1.69850 1.15380 1.22532 1.55580 0.85641 0.79499 0.79963 0.78089 1.21160 1.22111 1.18259 1.22386 1.00720 0.98702 0.96363 1.22768 0.77802 1.01527 1.00922 1.48100 1.08467 1.55021 1.19479 1.18310 0.85678 0.78127 0.83067 1.90789 1.15169 1.56784 1.79755 1.21468 0.90105 0.98332 0.95674 1.21803 1.01773 0.97891 0.94342 1.21910 0.94007 0.94988 0.95926 1.19287 0.94835 0.99434 0.96651 1.21424 0.96482 0.98547 0.95096 1.21458 0.93524 0.97103 1.00189 1.21326 1.01983 0.95422 0.92505 1.21057 0.92472 1.00960 0.99049 1.19378 0.95557 0.97544 0.90437 1.67830 1.12941 1.17899 1.18139 0.92557 0.92116 0.91187 0.89949 0.89525 0.80507 0.93485 0.92347 0.91179 0.93965 0.83721 0.82463 0.79479 0.81435 0.81837 0.82823 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 7.58 71.98 0.55 -3.01 16 2 C 0.14 4.50 3.18 44.83 0.14 4.64 16 3 H 0.05 1.96 6.64 -2.39 -0.02 1.94 16 4 C -0.12 -3.93 5.05 30.53 0.15 -3.78 16 5 C 0.17 6.53 3.10 45.02 0.14 6.67 16 6 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 7 N -0.75 -34.98 4.11 -322.80 -1.33 -36.31 16 8 C -0.22 -12.37 10.41 84.03 0.87 -11.50 16 9 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 10 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 11 N -0.98 -63.34 13.97 21.65 0.30 -63.03 16 12 Si 0.94 46.97 27.74 68.60 1.90 48.88 16 13 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 14 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 15 H -0.26 -11.85 6.52 99.48 0.65 -11.21 16 16 C -0.14 -5.00 5.78 30.67 0.18 -4.82 16 17 C 0.09 3.25 5.60 86.36 0.48 3.73 16 18 N -0.58 -19.47 2.98 -798.74 -2.38 -21.85 16 19 C 0.56 18.02 7.57 86.91 0.66 18.68 16 20 O -0.55 -18.15 11.75 -3.71 -0.04 -18.19 16 21 C 0.10 2.71 6.57 42.30 0.28 2.99 16 22 C -0.14 -2.90 9.53 22.36 0.21 -2.69 16 23 C -0.04 -0.65 9.88 22.48 0.22 -0.43 16 24 C -0.10 -1.81 5.75 -21.22 -0.12 -1.93 16 25 C -0.10 -1.09 9.77 22.31 0.22 -0.87 16 26 C -0.11 -1.09 9.96 22.07 0.22 -0.87 16 27 C -0.09 -1.35 9.94 22.04 0.22 -1.13 16 28 C -0.12 -2.55 9.99 22.38 0.22 -2.33 16 29 C 0.09 2.30 6.61 40.47 0.27 2.57 16 30 N -0.46 -13.32 6.09 -177.77 -1.08 -14.40 16 31 H 0.06 1.78 6.76 -2.39 -0.02 1.76 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.09 6.74 -2.39 -0.02 2.07 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.36 16.82 3.93 -92.71 -0.36 16.45 16 37 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.04 1.74 7.74 -2.39 -0.02 1.73 16 41 H 0.15 4.87 4.07 -63.65 -0.26 4.61 16 42 H 0.16 2.95 7.64 -2.91 -0.02 2.93 16 43 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 44 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.16 0.57 8.06 -2.91 -0.02 0.55 16 46 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 47 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -73.88 368.10 3.08 -70.80 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.32 Total: 31.11 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.38 Total: 2.99 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -4.49 Total: -135.59 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.04 Total: -18.19 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 1.90 Total: 48.88 kcal Total: -73.88 3.08 -70.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.865 kcal (2) G-P(sol) polarization free energy of solvation -73.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds