Wall clock time and date at job start Tue Mar 31 2020 22:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58390 * 2 1 4 4 C 1.53191 * 109.58631 * 239.72032 * 2 1 3 5 5 C 1.53034 * 109.31524 * 185.43595 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.35438 * 5 4 2 7 7 N 1.46500 * 109.45925 * 181.38616 * 5 4 2 8 8 C 1.36938 * 120.00023 * 154.97096 * 7 5 4 9 9 H 1.08001 * 120.00300 * 359.72660 * 8 7 5 10 10 C 1.38819 * 120.00288 * 179.97438 * 8 7 5 11 11 N 1.31612 * 119.99982 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99723 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47276 * 89.99522 * 12 10 8 14 14 H 1.48495 * 109.46915 * 210.00117 * 12 10 8 15 15 H 1.48502 * 109.46931 * 329.99729 * 12 10 8 16 16 C 1.53038 * 109.53013 * 61.36905 * 5 4 2 17 17 C 1.53184 * 109.31262 * 298.61816 * 16 5 4 18 18 N 1.46926 * 109.70493 * 120.35825 * 2 1 3 19 19 C 1.34773 * 120.63013 * 353.44710 * 18 2 1 20 20 O 1.21501 * 120.00396 * 6.85422 * 19 18 2 21 21 C 1.48284 * 119.99923 * 186.86474 * 19 18 2 22 22 C 1.40276 * 119.23905 * 194.51683 * 21 19 18 23 23 C 1.36503 * 119.81467 * 179.97438 * 22 21 19 24 24 C 1.40762 * 118.24748 * 359.97438 * 23 22 21 25 25 C 1.40416 * 121.28648 * 180.02562 * 24 23 22 26 26 C 1.36136 * 119.64895 * 180.02562 * 25 24 23 27 27 C 1.39430 * 120.91703 * 359.96641 * 26 25 24 28 28 C 1.35994 * 121.08285 * 0.02562 * 27 26 25 29 29 C 1.40833 * 119.73726 * 0.02562 * 28 27 26 30 30 N 1.31879 * 119.23575 * 14.23799 * 21 19 18 31 31 H 1.08994 * 109.47098 * 182.47995 * 1 2 3 32 32 H 1.09002 * 109.46243 * 302.47509 * 1 2 3 33 33 H 1.08993 * 109.46800 * 62.47606 * 1 2 3 34 34 H 1.09008 * 109.49695 * 65.48158 * 4 2 1 35 35 H 1.09003 * 109.52255 * 305.40571 * 4 2 1 36 36 H 0.96998 * 120.00007 * 334.96667 * 7 5 4 37 37 H 0.97002 * 119.99692 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49499 * 58.57915 * 16 5 4 39 39 H 1.08996 * 109.49901 * 178.67366 * 16 5 4 40 40 H 1.08998 * 109.59838 * 294.86704 * 17 16 5 41 41 H 1.09006 * 109.58904 * 174.43011 * 17 16 5 42 42 H 1.07989 * 120.09500 * 359.94941 * 22 21 19 43 43 H 1.08009 * 120.87908 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.17530 * 359.97438 * 25 24 23 45 45 H 1.08001 * 119.54007 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.45802 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.13604 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5678 -0.8433 -1.1730 6 1 4.0045 0.1529 -1.1021 7 7 4.0653 -1.5095 -2.3792 8 6 5.3487 -1.2893 -2.8031 9 1 5.9927 -0.6210 -2.2507 10 6 5.8204 -1.9209 -3.9457 11 7 7.0540 -1.7096 -4.3528 12 14 4.7041 -3.0707 -4.9055 13 1 3.9671 -2.2981 -5.9374 14 1 5.5229 -4.1202 -5.5637 15 1 3.7350 -3.7080 -3.9782 16 6 3.9601 -1.6610 0.0597 17 6 3.4687 -0.9437 1.3208 18 7 2.0255 -0.6991 1.1936 19 6 1.1723 -1.1079 2.1535 20 8 -0.0266 -1.0123 1.9816 21 6 1.6970 -1.6743 3.4195 22 6 0.8266 -2.3705 4.2712 23 6 1.2972 -2.8972 5.4393 24 6 2.6587 -2.7195 5.7495 25 6 3.2102 -3.2348 6.9335 26 6 4.5313 -3.0429 7.2004 27 6 5.3468 -2.3413 6.3133 28 6 4.8479 -1.8281 5.1570 29 6 3.4859 -2.0042 4.8449 30 7 2.9723 -1.5165 3.7160 31 1 -0.3633 -1.0266 0.0445 32 1 -0.3632 0.5518 0.8670 33 1 -0.3633 0.4749 -0.9113 34 1 1.7638 -0.1653 -2.1372 35 1 1.6049 -1.7245 -1.2928 36 1 3.4857 -2.1066 -2.8776 37 1 7.3834 -2.1506 -5.1514 38 1 3.5032 -2.6490 0.0014 39 1 5.0446 -1.7630 0.0986 40 1 3.9921 0.0063 1.4286 41 1 3.6577 -1.5685 2.1938 42 1 -0.2128 -2.4892 4.0038 43 1 0.6424 -3.4367 6.1077 44 1 2.5894 -3.7799 7.6292 45 1 4.9535 -3.4397 8.1118 46 1 6.3916 -2.2026 6.5488 47 1 5.4933 -1.2868 4.4811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:22 Heat of formation + Delta-G solvation = 68.145106 kcal Electronic energy + Delta-G solvation = -29346.566957 eV Core-core repulsion = 25495.754179 eV Total energy + Delta-G solvation = -3850.812778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.45476 -40.13076 -37.69272 -37.09764 -34.73436 -33.96801 -32.63873 -31.92757 -30.83731 -30.34194 -29.67435 -27.18894 -25.43680 -24.27152 -23.97479 -22.79527 -22.26288 -21.95571 -20.29485 -19.61202 -18.31032 -17.77469 -17.51553 -17.03071 -15.87353 -15.75401 -15.56115 -14.97952 -14.84001 -14.68643 -14.40796 -14.18436 -14.01621 -13.79462 -13.59506 -13.39700 -13.17586 -12.94570 -12.52755 -12.32493 -12.24248 -12.00448 -11.93314 -11.82589 -11.78910 -11.37716 -10.98335 -10.97338 -10.85887 -10.74116 -10.55995 -10.25869 -9.92309 -9.61390 -9.57402 -9.12841 -9.04215 -8.83721 -8.58700 -8.39339 -7.24731 -5.76329 -3.11387 -0.11590 0.36344 1.59761 2.20191 2.92724 3.05077 3.38628 3.42198 3.46220 3.73528 3.84284 4.19650 4.34946 4.45865 4.50630 4.60200 4.73491 4.80085 4.97332 5.02444 5.07332 5.14098 5.31374 5.38280 5.43186 5.55705 5.59006 5.60630 5.62905 5.69215 5.70895 5.85980 5.96782 5.97692 6.01032 6.06290 6.09497 6.10972 6.34564 6.35261 6.38676 6.44457 6.45735 6.57410 6.73732 6.90240 7.03275 7.34742 7.53061 8.00154 8.15857 8.43013 9.21633 9.94576 10.14895 11.42080 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003142 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.933776 B = 8909.981042 C =10456.654170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.076 0.924 4 C -0.138 4.138 5 C 0.182 3.818 6 H 0.056 0.944 7 N -0.749 5.749 8 C -0.241 4.241 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.292 1.292 15 H -0.278 1.278 16 C -0.151 4.151 17 C 0.080 3.920 18 N -0.577 5.577 19 C 0.565 3.435 20 O -0.532 6.532 21 C 0.120 3.880 22 C -0.125 4.125 23 C -0.063 4.063 24 C -0.088 4.088 25 C -0.103 4.103 26 C -0.108 4.108 27 C -0.104 4.104 28 C -0.083 4.083 29 C 0.117 3.883 30 N -0.429 5.429 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.360 0.640 37 H 0.259 0.741 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.402 -1.327 25.429 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.094 0.906 4 C -0.177 4.177 5 C 0.072 3.928 6 H 0.074 0.926 7 N -0.391 5.391 8 C -0.371 4.371 9 H 0.108 0.892 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.192 4.192 17 C -0.042 4.042 18 N -0.308 5.308 19 C 0.351 3.649 20 O -0.410 6.410 21 C -0.033 4.033 22 C -0.145 4.145 23 C -0.089 4.089 24 C -0.090 4.090 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.102 4.102 29 C -0.005 4.005 30 N -0.141 5.141 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.160 -0.723 24.722 26.738 hybrid contribution -0.969 -1.408 -0.308 1.737 sum -11.129 -2.131 24.414 26.915 Atomic orbital electron populations 1.22214 0.92787 1.03615 1.00679 1.21380 0.95456 0.95267 0.83744 0.90649 1.22334 0.97640 1.00919 0.96809 1.20182 0.90675 0.95449 0.86445 0.92576 1.42805 1.13269 1.54817 1.28168 1.19078 0.87842 1.22971 1.07221 0.89176 1.24662 0.96121 1.00134 0.98244 1.69698 1.15149 1.47304 1.26104 0.86562 0.80356 0.81307 0.80376 1.21099 1.21807 1.20389 1.22658 1.02001 0.99575 0.95004 1.22913 0.77920 1.02076 1.01288 1.48100 1.08528 1.55009 1.19173 1.17970 0.85872 0.78557 0.82535 1.90827 1.14807 1.56121 1.79226 1.21597 0.89473 0.96419 0.95818 1.21710 1.01821 0.96946 0.94027 1.21464 0.94010 0.97071 0.96320 1.18970 0.94549 0.99238 0.96291 1.20996 0.95833 0.99605 0.95712 1.21016 0.93817 0.98114 0.99642 1.20965 1.00510 0.97077 0.93881 1.20956 0.92727 0.99124 0.97358 1.19056 0.94765 0.96385 0.90340 1.68099 1.12187 1.18389 1.15421 0.91108 0.91294 0.93686 0.90507 0.91904 0.80720 0.93102 0.92782 0.90320 0.91585 0.85144 0.83261 0.83734 0.85099 0.85369 0.84959 0.84087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.60 37.16 0.28 -1.61 16 2 C 0.14 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.25 4.84 -26.61 -0.13 -2.38 16 5 C 0.18 3.49 2.73 -67.89 -0.19 3.30 16 6 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 7 N -0.75 -17.72 4.92 -53.39 -0.26 -17.98 16 8 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 9 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 10 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 11 N -0.93 -29.35 13.97 55.49 0.78 -28.57 16 12 Si 0.88 22.32 27.74 -169.99 -4.71 17.61 16 13 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 16 C -0.15 -2.66 5.66 -26.62 -0.15 -2.81 16 17 C 0.08 1.19 5.84 -3.71 -0.02 1.16 16 18 N -0.58 -8.56 2.97 -166.16 -0.49 -9.05 16 19 C 0.56 8.35 7.56 -12.13 -0.09 8.26 16 20 O -0.53 -8.46 11.80 5.37 0.06 -8.39 16 21 C 0.12 1.56 6.52 -82.95 -0.54 1.02 16 22 C -0.12 -1.32 9.53 -39.44 -0.38 -1.70 16 23 C -0.06 -0.54 9.88 -39.25 -0.39 -0.93 16 24 C -0.09 -0.84 5.75 -106.71 -0.61 -1.46 16 25 C -0.10 -0.73 9.77 -39.52 -0.39 -1.12 16 26 C -0.11 -0.70 9.96 -39.89 -0.40 -1.10 16 27 C -0.10 -0.76 9.94 -39.94 -0.40 -1.15 16 28 C -0.08 -0.78 9.99 -39.41 -0.39 -1.18 16 29 C 0.12 1.32 6.61 -84.85 -0.56 0.76 16 30 N -0.43 -5.49 6.19 -7.54 -0.05 -5.53 16 31 H 0.07 1.08 6.79 -51.93 -0.35 0.73 16 32 H 0.07 0.99 6.72 -51.93 -0.35 0.64 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.23 8.14 -51.92 -0.42 0.80 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 37 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 38 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.13 1.87 4.15 -77.74 -0.32 1.55 16 42 H 0.15 1.44 7.67 -52.49 -0.40 1.03 16 43 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 44 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -33.15 372.61 -10.64 -43.79 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.74 Total: 8.44 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.84 Total: -5.93 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.03 Total: -61.13 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.15 -10.64 -43.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.940 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds