Wall clock time and date at job start Tue Mar 31 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58390 * 2 1 4 4 C 1.53191 * 109.58631 * 239.72032 * 2 1 3 5 5 C 1.53034 * 109.31524 * 185.43595 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.35438 * 5 4 2 7 7 N 1.46500 * 109.45925 * 181.38616 * 5 4 2 8 8 C 1.36938 * 120.00023 * 154.97096 * 7 5 4 9 9 H 1.08001 * 120.00300 * 359.72660 * 8 7 5 10 10 C 1.38819 * 120.00288 * 179.97438 * 8 7 5 11 11 N 1.31612 * 119.99982 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99723 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47276 * 89.99522 * 12 10 8 14 14 H 1.48495 * 109.46915 * 210.00117 * 12 10 8 15 15 H 1.48502 * 109.46931 * 329.99729 * 12 10 8 16 16 C 1.53038 * 109.53013 * 61.36905 * 5 4 2 17 17 C 1.53184 * 109.31262 * 298.61816 * 16 5 4 18 18 N 1.46926 * 109.70493 * 120.35825 * 2 1 3 19 19 C 1.34773 * 120.63013 * 353.44710 * 18 2 1 20 20 O 1.21501 * 120.00396 * 6.85422 * 19 18 2 21 21 C 1.48284 * 119.99923 * 186.86474 * 19 18 2 22 22 C 1.40276 * 119.23905 * 194.51683 * 21 19 18 23 23 C 1.36503 * 119.81467 * 179.97438 * 22 21 19 24 24 C 1.40762 * 118.24748 * 359.97438 * 23 22 21 25 25 C 1.40416 * 121.28648 * 180.02562 * 24 23 22 26 26 C 1.36136 * 119.64895 * 180.02562 * 25 24 23 27 27 C 1.39430 * 120.91703 * 359.96641 * 26 25 24 28 28 C 1.35994 * 121.08285 * 0.02562 * 27 26 25 29 29 C 1.40833 * 119.73726 * 0.02562 * 28 27 26 30 30 N 1.31879 * 119.23575 * 14.23799 * 21 19 18 31 31 H 1.08994 * 109.47098 * 182.47995 * 1 2 3 32 32 H 1.09002 * 109.46243 * 302.47509 * 1 2 3 33 33 H 1.08993 * 109.46800 * 62.47606 * 1 2 3 34 34 H 1.09008 * 109.49695 * 65.48158 * 4 2 1 35 35 H 1.09003 * 109.52255 * 305.40571 * 4 2 1 36 36 H 0.96998 * 120.00007 * 334.96667 * 7 5 4 37 37 H 0.97002 * 119.99692 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49499 * 58.57915 * 16 5 4 39 39 H 1.08996 * 109.49901 * 178.67366 * 16 5 4 40 40 H 1.08998 * 109.59838 * 294.86704 * 17 16 5 41 41 H 1.09006 * 109.58904 * 174.43011 * 17 16 5 42 42 H 1.07989 * 120.09500 * 359.94941 * 22 21 19 43 43 H 1.08009 * 120.87908 * 180.02562 * 23 22 21 44 44 H 1.08003 * 120.17530 * 359.97438 * 25 24 23 45 45 H 1.08001 * 119.54007 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.45802 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.13604 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5678 -0.8433 -1.1730 6 1 4.0045 0.1529 -1.1021 7 7 4.0653 -1.5095 -2.3792 8 6 5.3487 -1.2893 -2.8031 9 1 5.9927 -0.6210 -2.2507 10 6 5.8204 -1.9209 -3.9457 11 7 7.0540 -1.7096 -4.3528 12 14 4.7041 -3.0707 -4.9055 13 1 3.9671 -2.2981 -5.9374 14 1 5.5229 -4.1202 -5.5637 15 1 3.7350 -3.7080 -3.9782 16 6 3.9601 -1.6610 0.0597 17 6 3.4687 -0.9437 1.3208 18 7 2.0255 -0.6991 1.1936 19 6 1.1723 -1.1079 2.1535 20 8 -0.0266 -1.0123 1.9816 21 6 1.6970 -1.6743 3.4195 22 6 0.8266 -2.3705 4.2712 23 6 1.2972 -2.8972 5.4393 24 6 2.6587 -2.7195 5.7495 25 6 3.2102 -3.2348 6.9335 26 6 4.5313 -3.0429 7.2004 27 6 5.3468 -2.3413 6.3133 28 6 4.8479 -1.8281 5.1570 29 6 3.4859 -2.0042 4.8449 30 7 2.9723 -1.5165 3.7160 31 1 -0.3633 -1.0266 0.0445 32 1 -0.3632 0.5518 0.8670 33 1 -0.3633 0.4749 -0.9113 34 1 1.7638 -0.1653 -2.1372 35 1 1.6049 -1.7245 -1.2928 36 1 3.4857 -2.1066 -2.8776 37 1 7.3834 -2.1506 -5.1514 38 1 3.5032 -2.6490 0.0014 39 1 5.0446 -1.7630 0.0986 40 1 3.9921 0.0063 1.4286 41 1 3.6577 -1.5685 2.1938 42 1 -0.2128 -2.4892 4.0038 43 1 0.6424 -3.4367 6.1077 44 1 2.5894 -3.7799 7.6292 45 1 4.9535 -3.4397 8.1118 46 1 6.3916 -2.2026 6.5488 47 1 5.4933 -1.2868 4.4811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044831763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:21 Heat of formation + Delta-G solvation = 48.769568 kcal Electronic energy + Delta-G solvation = -29347.407143 eV Core-core repulsion = 25495.754179 eV Total energy + Delta-G solvation = -3851.652964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.31761 -41.14993 -38.93722 -37.93356 -36.37013 -34.81427 -33.89371 -33.70423 -31.78109 -31.40369 -30.89277 -28.51502 -26.38467 -25.77618 -24.79200 -24.26383 -23.21469 -22.94931 -21.76970 -20.86722 -19.62229 -19.02776 -18.49273 -17.97475 -17.01311 -16.80528 -16.74849 -16.44390 -15.92287 -15.68357 -15.51406 -15.36380 -15.04656 -14.92961 -14.78891 -14.65890 -14.28868 -14.16193 -14.03413 -13.69203 -13.43106 -13.15509 -13.08568 -12.93797 -12.65234 -12.59743 -12.44971 -12.36136 -12.15050 -12.06259 -11.97316 -11.80861 -11.56508 -11.42682 -11.03366 -10.62297 -10.01066 -9.86373 -9.60594 -9.32769 -9.21602 -8.02622 -5.35667 -0.84632 -0.33466 0.91489 1.36767 1.38064 1.39128 1.46273 1.83287 2.18309 2.47492 2.87714 3.06375 3.28689 3.46134 3.50138 3.59777 3.78835 3.84093 3.87148 4.03961 4.06624 4.15440 4.25597 4.25832 4.31843 4.38742 4.50526 4.52638 4.55891 4.66220 4.77808 4.83458 4.91325 4.95459 4.98440 5.01305 5.07905 5.11585 5.18063 5.24315 5.38306 5.39676 5.42994 5.47919 5.52424 5.70998 5.77361 5.88436 6.21455 6.31676 6.56914 7.04034 7.06868 7.82980 8.02593 9.18921 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.003142 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.933776 B = 8909.981042 C =10456.654170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.145 3.855 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.176 3.824 6 H 0.048 0.952 7 N -0.752 5.752 8 C -0.226 4.226 9 H 0.059 0.941 10 C -0.063 4.063 11 N -0.983 5.983 12 Si 0.953 3.047 13 H -0.278 1.278 14 H -0.296 1.296 15 H -0.258 1.258 16 C -0.140 4.140 17 C 0.093 3.907 18 N -0.583 5.583 19 C 0.562 3.438 20 O -0.547 6.547 21 C 0.095 3.905 22 C -0.140 4.140 23 C -0.046 4.046 24 C -0.101 4.101 25 C -0.100 4.100 26 C -0.106 4.106 27 C -0.094 4.094 28 C -0.112 4.112 29 C 0.093 3.907 30 N -0.450 5.450 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.363 0.637 37 H 0.257 0.743 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.184 0.816 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.156 0.844 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -2.694 28.242 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.042 3.958 3 H 0.103 0.897 4 C -0.165 4.165 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.394 5.394 8 C -0.357 4.357 9 H 0.077 0.923 10 C -0.254 4.254 11 N -0.634 5.634 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.223 1.223 15 H -0.183 1.183 16 C -0.181 4.181 17 C -0.029 4.029 18 N -0.314 5.314 19 C 0.350 3.650 20 O -0.426 6.426 21 C -0.057 4.057 22 C -0.161 4.161 23 C -0.071 4.071 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.114 4.114 28 C -0.131 4.131 29 C -0.030 4.030 30 N -0.163 5.163 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.196 0.804 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.202 0.798 44 H 0.182 0.818 45 H 0.180 0.820 46 H 0.174 0.826 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.869 -2.076 27.578 30.096 hybrid contribution -0.346 -0.952 -0.945 1.385 sum -12.215 -3.028 26.634 29.457 Atomic orbital electron populations 1.22063 0.91866 1.02796 1.01298 1.21407 0.96049 0.95435 0.82924 0.89711 1.22200 0.94965 1.01168 0.98172 1.20393 0.92719 0.94719 0.85320 0.93428 1.42824 1.11758 1.55233 1.29585 1.19029 0.89051 1.21234 1.06354 0.92282 1.25445 0.97674 1.02563 0.99754 1.69873 1.17384 1.49216 1.26939 0.85444 0.78558 0.78943 0.79011 1.20371 1.22309 1.18261 1.22464 1.00655 0.99222 0.95752 1.22796 0.78147 1.02084 0.99917 1.48122 1.08355 1.55381 1.19518 1.18290 0.85682 0.78002 0.83059 1.90804 1.15302 1.56670 1.79791 1.21441 0.90295 0.98204 0.95724 1.21795 1.01781 0.97722 0.94777 1.21888 0.94079 0.95516 0.95634 1.19287 0.94929 0.99145 0.96960 1.21399 0.96558 0.98901 0.95011 1.21460 0.93593 0.96930 1.00332 1.21343 1.01861 0.95416 0.92760 1.21082 0.92348 1.00860 0.98764 1.19393 0.95779 0.97267 0.90551 1.67847 1.12280 1.19314 1.16821 0.92492 0.91802 0.91960 0.89794 0.92238 0.80396 0.93390 0.93560 0.92325 0.91283 0.84265 0.82785 0.79836 0.81799 0.82037 0.82624 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.31 7.60 71.98 0.55 -2.77 16 2 C 0.14 4.15 3.49 44.98 0.16 4.30 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 C -0.13 -4.04 4.84 30.67 0.15 -3.89 16 5 C 0.18 6.84 2.73 45.02 0.12 6.97 16 6 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 7 N -0.75 -35.74 4.92 -322.82 -1.59 -37.33 16 8 C -0.23 -12.95 10.41 84.04 0.87 -12.08 16 9 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 10 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 11 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 12 Si 0.95 46.45 27.74 68.60 1.90 48.35 16 13 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 14 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 15 H -0.26 -11.57 6.52 99.48 0.65 -10.92 16 16 C -0.14 -5.06 5.66 30.67 0.17 -4.89 16 17 C 0.09 2.82 5.84 86.36 0.50 3.32 16 18 N -0.58 -17.38 2.97 -797.91 -2.37 -19.75 16 19 C 0.56 16.77 7.56 86.92 0.66 17.42 16 20 O -0.55 -17.41 11.80 -3.72 -0.04 -17.45 16 21 C 0.10 2.49 6.52 42.31 0.28 2.77 16 22 C -0.14 -2.85 9.53 22.36 0.21 -2.64 16 23 C -0.05 -0.67 9.88 22.48 0.22 -0.45 16 24 C -0.10 -1.71 5.75 -21.22 -0.12 -1.83 16 25 C -0.10 -1.04 9.77 22.31 0.22 -0.82 16 26 C -0.11 -0.95 9.96 22.07 0.22 -0.73 16 27 C -0.09 -1.14 9.94 22.04 0.22 -0.92 16 28 C -0.11 -2.05 9.99 22.38 0.22 -1.83 16 29 C 0.09 2.04 6.61 40.47 0.27 2.31 16 30 N -0.45 -11.69 6.19 -177.76 -1.10 -12.79 16 31 H 0.06 1.70 6.79 -2.39 -0.02 1.68 16 32 H 0.06 1.80 6.72 -2.39 -0.02 1.78 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.08 2.57 8.14 -2.38 -0.02 2.56 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.36 16.80 5.66 -92.71 -0.52 16.27 16 37 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.14 4.13 4.15 -53.35 -0.22 3.91 16 42 H 0.15 2.85 7.67 -2.92 -0.02 2.83 16 43 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 45 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 46 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 47 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -74.32 372.61 2.68 -71.64 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.19 Total: 29.59 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.39 Total: 0.97 kcal Atomic # 7 Polarization: -128.34 SS G_CDS: -4.76 Total: -133.10 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.04 Total: -17.45 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.90 Total: 48.35 kcal Total: -74.32 2.68 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.408 kcal (2) G-P(sol) polarization free energy of solvation -74.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds