Wall clock time and date at job start Tue Mar 31 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58517 * 2 1 4 4 C 1.53201 * 109.70247 * 120.35160 * 2 1 3 5 5 C 1.53043 * 109.31006 * 174.49455 * 4 2 1 6 6 H 1.08993 * 109.46175 * 58.65304 * 5 4 2 7 7 N 1.46504 * 109.45718 * 178.61463 * 5 4 2 8 8 C 1.36932 * 119.99610 * 204.99695 * 7 5 4 9 9 H 1.08001 * 120.00467 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99688 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00193 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99896 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47287 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47020 * 120.00302 * 12 10 8 15 15 H 1.48495 * 109.47567 * 240.00207 * 12 10 8 16 16 C 1.53043 * 109.53675 * 298.63170 * 5 4 2 17 17 C 1.52765 * 109.38211 * 61.24453 * 16 5 4 18 18 N 1.46920 * 109.58924 * 239.70865 * 2 1 3 19 19 C 1.34780 * 120.62904 * 6.44575 * 18 2 1 20 20 O 1.21495 * 120.00092 * 0.51838 * 19 18 2 21 21 C 1.48280 * 120.00139 * 180.52598 * 19 18 2 22 22 C 1.40278 * 119.24102 * 157.48369 * 21 19 18 23 23 C 1.36506 * 119.81617 * 180.02562 * 22 21 19 24 24 C 1.40752 * 118.24451 * 359.97438 * 23 22 21 25 25 C 1.40417 * 121.28145 * 179.97438 * 24 23 22 26 26 C 1.36139 * 119.64884 * 180.02562 * 25 24 23 27 27 C 1.39435 * 120.91560 * 359.97438 * 26 25 24 28 28 C 1.35987 * 121.08485 * 0.02562 * 27 26 25 29 29 C 1.40827 * 119.73502 * 0.27773 * 28 27 26 30 30 N 1.31876 * 119.23865 * 337.50747 * 21 19 18 31 31 H 1.09005 * 109.47148 * 174.05583 * 1 2 3 32 32 H 1.08998 * 109.47551 * 294.05668 * 1 2 3 33 33 H 1.09002 * 109.47460 * 54.05803 * 1 2 3 34 34 H 1.08997 * 109.49532 * 294.44113 * 4 2 1 35 35 H 1.09001 * 109.49686 * 54.50869 * 4 2 1 36 36 H 0.97001 * 119.99825 * 25.00121 * 7 5 4 37 37 H 0.96994 * 120.00022 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.49369 * 181.32088 * 16 5 4 39 39 H 1.09000 * 109.49870 * 301.38377 * 16 5 4 40 40 H 1.08996 * 109.50655 * 185.70461 * 17 16 5 41 41 H 1.09001 * 109.43058 * 65.41871 * 17 16 5 42 42 H 1.08001 * 120.09042 * 359.97438 * 22 21 19 43 43 H 1.07996 * 120.87747 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.17692 * 0.07283 * 25 24 23 45 45 H 1.08002 * 119.53952 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.45679 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.13268 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7288 1.2446 5 6 3.5706 -0.8442 1.1675 6 1 4.0071 0.1520 1.0965 7 7 4.0710 -1.5114 2.3720 8 6 5.3555 -1.2919 2.7925 9 1 5.9996 -0.6267 2.2366 10 6 5.8296 -1.9237 3.9341 11 7 5.0446 -2.7340 4.6119 12 14 7.5821 -1.6249 4.5074 13 1 8.2526 -0.6802 3.5784 14 1 7.5636 -1.0448 5.8744 15 1 8.3232 -2.9115 4.5258 16 6 3.9602 -1.6608 -0.0668 17 6 3.4648 -0.9475 -1.3236 18 7 2.0225 -0.6982 -1.1952 19 6 1.1670 -1.1069 -2.1531 20 8 -0.0229 -0.8907 -2.0374 21 6 1.6781 -1.8207 -3.3481 22 6 0.8076 -2.6417 -4.0802 23 6 1.2658 -3.3047 -5.1820 24 6 2.6145 -3.1364 -5.5477 25 6 3.1528 -3.7883 -6.6688 26 6 4.4621 -3.6021 -6.9919 27 6 5.2782 -2.7716 -6.2248 28 6 4.7919 -2.1240 -5.1324 29 6 3.4443 -2.2954 -4.7612 30 7 2.9406 -1.6693 -3.6979 31 1 -0.3634 -1.0222 -0.1064 32 1 -0.3634 0.4189 0.9384 33 1 -0.3634 0.6032 -0.8320 34 1 1.7689 -0.1671 2.1365 35 1 1.6075 -1.7254 1.2910 36 1 3.4924 -2.1087 2.8714 37 1 5.3760 -3.1757 5.4093 38 1 5.0446 -1.7624 -0.1083 39 1 3.5041 -2.6491 -0.0081 40 1 3.6510 -1.5747 -2.1954 41 1 3.9912 0.0006 -1.4338 42 1 -0.2220 -2.7497 -3.7725 43 1 0.6105 -3.9409 -5.7584 44 1 2.5313 -4.4334 -7.2721 45 1 4.8744 -4.1047 -7.8544 46 1 6.3136 -2.6404 -6.5028 47 1 5.4378 -1.4846 -4.5489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044831766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:26 Heat of formation + Delta-G solvation = 63.490246 kcal Electronic energy + Delta-G solvation = -29312.440800 eV Core-core repulsion = 25461.426172 eV Total energy + Delta-G solvation = -3851.014628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.42557 -40.08181 -37.61728 -37.05373 -34.58871 -33.93032 -32.58705 -31.89910 -30.80236 -30.29139 -29.18529 -27.04861 -25.39847 -24.24252 -23.95992 -22.89935 -22.33814 -21.93580 -20.29740 -19.43680 -18.28472 -17.69567 -17.17151 -16.96442 -15.85000 -15.79158 -15.43005 -14.95596 -14.80320 -14.67575 -14.39462 -14.07595 -13.81659 -13.74315 -13.53044 -13.39491 -13.14169 -13.00380 -12.59722 -12.22532 -12.16246 -11.93923 -11.82332 -11.74737 -11.53498 -11.29722 -10.90807 -10.89894 -10.78915 -10.65167 -10.48057 -10.18368 -9.85717 -9.70549 -9.57107 -9.11074 -8.98400 -8.81556 -8.54393 -8.34342 -6.93692 -5.75513 -3.04123 -0.07940 0.39409 1.62459 2.24561 2.95725 3.07220 3.43349 3.48928 3.51235 3.75328 3.88933 4.22110 4.37748 4.48151 4.54034 4.59235 4.75849 4.82115 4.99567 5.09663 5.18282 5.24985 5.39693 5.42896 5.51203 5.59221 5.63754 5.64904 5.68404 5.72792 5.81526 5.94712 6.00062 6.04397 6.07639 6.09585 6.17749 6.27064 6.39937 6.43156 6.49745 6.53303 6.59112 6.62449 6.80694 6.98836 7.12692 7.38487 7.57704 7.71228 8.20899 8.42900 9.54054 10.12311 10.47252 11.47274 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.003163 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.122552 B = 8849.257227 C =10757.265135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.144 3.856 3 H 0.073 0.927 4 C -0.134 4.134 5 C 0.178 3.822 6 H 0.047 0.953 7 N -0.725 5.725 8 C -0.236 4.236 9 H 0.071 0.929 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.151 4.151 17 C 0.077 3.923 18 N -0.575 5.575 19 C 0.565 3.435 20 O -0.533 6.533 21 C 0.122 3.878 22 C -0.125 4.125 23 C -0.062 4.062 24 C -0.089 4.089 25 C -0.102 4.102 26 C -0.109 4.109 27 C -0.105 4.105 28 C -0.084 4.084 29 C 0.117 3.883 30 N -0.430 5.430 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.383 0.617 37 H 0.254 0.746 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.132 0.868 41 H 0.064 0.936 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.131 0.869 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 -0.368 -25.126 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.173 4.173 5 C 0.067 3.933 6 H 0.065 0.935 7 N -0.365 5.365 8 C -0.368 4.368 9 H 0.089 0.911 10 C -0.211 4.211 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.046 4.046 18 N -0.306 5.306 19 C 0.351 3.649 20 O -0.410 6.410 21 C -0.031 4.031 22 C -0.145 4.145 23 C -0.088 4.088 24 C -0.091 4.091 25 C -0.120 4.120 26 C -0.127 4.127 27 C -0.124 4.124 28 C -0.102 4.102 29 C -0.005 4.005 30 N -0.142 5.142 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.148 0.852 41 H 0.083 0.917 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.150 0.850 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.869 0.368 -24.534 25.229 hybrid contribution 0.501 -0.752 0.167 0.919 sum -5.367 -0.384 -24.366 24.953 Atomic orbital electron populations 1.22202 0.92839 1.03665 1.00561 1.21408 0.95448 0.95274 0.83771 0.90862 1.22290 0.97679 1.00899 0.96411 1.20205 0.90790 0.95045 0.87223 0.93486 1.42442 1.12908 1.54271 1.26849 1.19288 0.89132 1.21950 1.06389 0.91131 1.24744 0.98135 0.99943 0.98235 1.69672 1.35315 1.33641 1.19512 0.86140 0.84592 0.77260 0.78355 1.20550 1.21919 1.21934 1.22605 1.01579 0.99849 0.95181 1.22840 0.78116 1.01984 1.01614 1.48113 1.08425 1.54840 1.19235 1.17960 0.85737 0.79148 0.82103 1.90831 1.15403 1.57062 1.77743 1.21590 0.89513 0.95952 0.96001 1.21704 1.01636 0.96095 0.95076 1.21456 0.94114 0.97441 0.95806 1.18960 0.94639 0.98574 0.96929 1.20997 0.95951 0.99227 0.95860 1.21008 0.93872 0.98086 0.99739 1.20952 1.00402 0.96252 0.94835 1.20934 0.92950 0.99402 0.96943 1.19039 0.94815 0.95026 0.91618 1.68023 1.12266 1.21133 1.12807 0.91334 0.93661 0.91170 0.90553 0.91826 0.78328 0.93602 0.90796 0.92716 0.85203 0.91745 0.83310 0.83712 0.85091 0.85390 0.85020 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.61 37.16 0.28 -1.70 16 2 C 0.14 2.20 3.49 -67.60 -0.24 1.97 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.13 -2.32 4.85 -26.60 -0.13 -2.45 16 5 C 0.18 3.55 2.73 -67.88 -0.19 3.36 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -18.22 5.12 -53.38 -0.27 -18.49 16 8 C -0.24 -6.54 9.93 -15.06 -0.15 -6.68 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 12 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 C -0.15 -2.74 5.64 -26.83 -0.15 -2.90 16 17 C 0.08 1.17 5.95 -3.93 -0.02 1.15 16 18 N -0.58 -8.87 2.98 -166.42 -0.50 -9.37 16 19 C 0.56 8.67 7.48 -12.13 -0.09 8.58 16 20 O -0.53 -8.77 11.94 5.37 0.06 -8.71 16 21 C 0.12 1.66 6.45 -82.95 -0.54 1.12 16 22 C -0.12 -1.38 9.53 -39.44 -0.38 -1.75 16 23 C -0.06 -0.56 9.88 -39.26 -0.39 -0.94 16 24 C -0.09 -0.88 5.75 -106.72 -0.61 -1.49 16 25 C -0.10 -0.75 9.77 -39.52 -0.39 -1.14 16 26 C -0.11 -0.73 9.96 -39.89 -0.40 -1.13 16 27 C -0.10 -0.77 9.94 -39.94 -0.40 -1.17 16 28 C -0.08 -0.80 9.99 -39.41 -0.39 -1.20 16 29 C 0.12 1.36 6.61 -84.85 -0.56 0.80 16 30 N -0.43 -5.67 6.31 -7.54 -0.05 -5.72 16 31 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.06 6.73 -51.93 -0.35 0.71 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.13 1.92 4.00 -79.05 -0.32 1.60 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.15 1.49 7.77 -52.49 -0.41 1.08 16 43 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -32.38 375.89 -10.99 -43.38 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.78 Total: 9.58 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -4.83 Total: -6.10 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.09 Total: -61.18 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.06 Total: -8.71 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.38 -10.99 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.866 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds