Wall clock time and date at job start Tue Mar 31 2020 22:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.58517 * 2 1 4 4 C 1.53201 * 109.70247 * 120.35160 * 2 1 3 5 5 C 1.53043 * 109.31006 * 174.49455 * 4 2 1 6 6 H 1.08993 * 109.46175 * 58.65304 * 5 4 2 7 7 N 1.46504 * 109.45718 * 178.61463 * 5 4 2 8 8 C 1.36932 * 119.99610 * 204.99695 * 7 5 4 9 9 H 1.08001 * 120.00467 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99688 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00193 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99896 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47287 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47020 * 120.00302 * 12 10 8 15 15 H 1.48495 * 109.47567 * 240.00207 * 12 10 8 16 16 C 1.53043 * 109.53675 * 298.63170 * 5 4 2 17 17 C 1.52765 * 109.38211 * 61.24453 * 16 5 4 18 18 N 1.46920 * 109.58924 * 239.70865 * 2 1 3 19 19 C 1.34780 * 120.62904 * 6.44575 * 18 2 1 20 20 O 1.21495 * 120.00092 * 0.51838 * 19 18 2 21 21 C 1.48280 * 120.00139 * 180.52598 * 19 18 2 22 22 C 1.40278 * 119.24102 * 157.48369 * 21 19 18 23 23 C 1.36506 * 119.81617 * 180.02562 * 22 21 19 24 24 C 1.40752 * 118.24451 * 359.97438 * 23 22 21 25 25 C 1.40417 * 121.28145 * 179.97438 * 24 23 22 26 26 C 1.36139 * 119.64884 * 180.02562 * 25 24 23 27 27 C 1.39435 * 120.91560 * 359.97438 * 26 25 24 28 28 C 1.35987 * 121.08485 * 0.02562 * 27 26 25 29 29 C 1.40827 * 119.73502 * 0.27773 * 28 27 26 30 30 N 1.31876 * 119.23865 * 337.50747 * 21 19 18 31 31 H 1.09005 * 109.47148 * 174.05583 * 1 2 3 32 32 H 1.08998 * 109.47551 * 294.05668 * 1 2 3 33 33 H 1.09002 * 109.47460 * 54.05803 * 1 2 3 34 34 H 1.08997 * 109.49532 * 294.44113 * 4 2 1 35 35 H 1.09001 * 109.49686 * 54.50869 * 4 2 1 36 36 H 0.97001 * 119.99825 * 25.00121 * 7 5 4 37 37 H 0.96994 * 120.00022 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.49369 * 181.32088 * 16 5 4 39 39 H 1.09000 * 109.49870 * 301.38377 * 16 5 4 40 40 H 1.08996 * 109.50655 * 185.70461 * 17 16 5 41 41 H 1.09001 * 109.43058 * 65.41871 * 17 16 5 42 42 H 1.08001 * 120.09042 * 359.97438 * 22 21 19 43 43 H 1.07996 * 120.87747 * 180.02562 * 23 22 21 44 44 H 1.08000 * 120.17692 * 0.07283 * 25 24 23 45 45 H 1.08002 * 119.53952 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.45679 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.13268 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7288 1.2446 5 6 3.5706 -0.8442 1.1675 6 1 4.0071 0.1520 1.0965 7 7 4.0710 -1.5114 2.3720 8 6 5.3555 -1.2919 2.7925 9 1 5.9996 -0.6267 2.2366 10 6 5.8296 -1.9237 3.9341 11 7 5.0446 -2.7340 4.6119 12 14 7.5821 -1.6249 4.5074 13 1 8.2526 -0.6802 3.5784 14 1 7.5636 -1.0448 5.8744 15 1 8.3232 -2.9115 4.5258 16 6 3.9602 -1.6608 -0.0668 17 6 3.4648 -0.9475 -1.3236 18 7 2.0225 -0.6982 -1.1952 19 6 1.1670 -1.1069 -2.1531 20 8 -0.0229 -0.8907 -2.0374 21 6 1.6781 -1.8207 -3.3481 22 6 0.8076 -2.6417 -4.0802 23 6 1.2658 -3.3047 -5.1820 24 6 2.6145 -3.1364 -5.5477 25 6 3.1528 -3.7883 -6.6688 26 6 4.4621 -3.6021 -6.9919 27 6 5.2782 -2.7716 -6.2248 28 6 4.7919 -2.1240 -5.1324 29 6 3.4443 -2.2954 -4.7612 30 7 2.9406 -1.6693 -3.6979 31 1 -0.3634 -1.0222 -0.1064 32 1 -0.3634 0.4189 0.9384 33 1 -0.3634 0.6032 -0.8320 34 1 1.7689 -0.1671 2.1365 35 1 1.6075 -1.7254 1.2910 36 1 3.4924 -2.1087 2.8714 37 1 5.3760 -3.1757 5.4093 38 1 5.0446 -1.7624 -0.1083 39 1 3.5041 -2.6491 -0.0081 40 1 3.6510 -1.5747 -2.1954 41 1 3.9912 0.0006 -1.4338 42 1 -0.2220 -2.7497 -3.7725 43 1 0.6105 -3.9409 -5.7584 44 1 2.5313 -4.4334 -7.2721 45 1 4.8744 -4.1047 -7.8544 46 1 6.3136 -2.6404 -6.5028 47 1 5.4378 -1.4846 -4.5489 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044831766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:25 Heat of formation + Delta-G solvation = 45.137780 kcal Electronic energy + Delta-G solvation = -29313.236623 eV Core-core repulsion = 25461.426172 eV Total energy + Delta-G solvation = -3851.810450 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.32181 -41.14550 -38.88537 -37.93347 -36.25598 -34.81306 -33.80840 -33.68396 -31.65534 -31.12556 -30.78655 -28.46195 -26.38652 -25.90445 -24.79242 -24.38786 -23.24810 -22.95121 -21.73424 -20.73627 -19.18296 -19.02983 -18.51298 -17.98723 -17.05259 -16.88971 -16.66783 -16.39063 -15.71592 -15.66528 -15.51115 -15.37819 -15.09413 -14.97479 -14.78901 -14.62638 -14.28701 -14.05813 -13.97047 -13.45309 -13.36374 -13.09721 -12.98960 -12.86884 -12.66559 -12.61782 -12.44165 -12.34459 -12.12491 -12.05147 -11.98542 -11.75048 -11.55584 -11.40988 -11.01618 -10.61675 -10.01506 -9.85321 -9.60706 -9.24890 -8.99609 -7.94036 -5.23052 -0.83378 -0.33150 0.92014 1.38449 1.47179 1.47810 1.57951 1.82024 2.16132 2.55803 2.88628 3.06316 3.39275 3.48795 3.60029 3.71058 3.80051 3.83875 3.89583 4.06414 4.09870 4.16924 4.25927 4.29257 4.32304 4.39007 4.50572 4.55153 4.61197 4.70913 4.77813 4.84285 4.91040 4.96560 5.00662 5.02220 5.07988 5.12208 5.19284 5.25352 5.38773 5.39764 5.46641 5.47847 5.51600 5.53038 5.71538 5.88653 6.27358 6.32161 6.56694 7.03583 7.33345 8.07987 8.32456 9.29842 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.003163 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.122552 B = 8849.257227 C =10757.265135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.146 3.854 3 H 0.086 0.914 4 C -0.122 4.122 5 C 0.174 3.826 6 H 0.047 0.953 7 N -0.737 5.737 8 C -0.235 4.235 9 H 0.077 0.923 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.972 3.028 13 H -0.264 1.264 14 H -0.295 1.295 15 H -0.295 1.295 16 C -0.137 4.137 17 C 0.089 3.911 18 N -0.582 5.582 19 C 0.562 3.438 20 O -0.549 6.549 21 C 0.096 3.904 22 C -0.142 4.142 23 C -0.046 4.046 24 C -0.102 4.102 25 C -0.101 4.101 26 C -0.106 4.106 27 C -0.093 4.093 28 C -0.111 4.111 29 C 0.092 3.908 30 N -0.450 5.450 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.141 0.859 41 H 0.073 0.927 42 H 0.153 0.847 43 H 0.184 0.816 44 H 0.164 0.836 45 H 0.162 0.838 46 H 0.158 0.842 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -0.702 -28.410 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.161 4.161 5 C 0.065 3.935 6 H 0.065 0.935 7 N -0.376 5.376 8 C -0.367 4.367 9 H 0.095 0.905 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.801 3.199 13 H -0.188 1.188 14 H -0.222 1.222 15 H -0.222 1.222 16 C -0.178 4.178 17 C -0.034 4.034 18 N -0.312 5.312 19 C 0.349 3.651 20 O -0.428 6.428 21 C -0.055 4.055 22 C -0.163 4.163 23 C -0.071 4.071 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.130 4.130 29 C -0.030 4.030 30 N -0.162 5.162 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.158 0.842 41 H 0.091 0.909 42 H 0.171 0.829 43 H 0.201 0.799 44 H 0.181 0.819 45 H 0.180 0.820 46 H 0.175 0.825 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.088 0.066 -27.869 28.330 hybrid contribution 0.293 -0.690 0.981 1.235 sum -4.795 -0.625 -26.888 27.320 Atomic orbital electron populations 1.22057 0.92069 1.02718 1.01198 1.21394 0.95949 0.95487 0.82829 0.89590 1.22137 0.95651 1.00543 0.97722 1.20415 0.92399 0.94630 0.86025 0.93453 1.42649 1.12213 1.54445 1.28304 1.19664 0.90069 1.20962 1.06001 0.90468 1.25564 1.02148 1.00440 0.98838 1.69834 1.37180 1.35224 1.20041 0.85087 0.79992 0.77082 0.77713 1.18818 1.22195 1.22199 1.22389 1.00648 0.98954 0.95855 1.22761 0.78182 1.02260 1.00162 1.48145 1.08424 1.55217 1.19446 1.18304 0.85516 0.78698 0.82566 1.90805 1.15973 1.57614 1.78386 1.21402 0.90473 0.97534 0.96116 1.21788 1.01595 0.96826 0.96069 1.21880 0.94250 0.96283 0.94688 1.19283 0.94949 0.98531 0.97647 1.21396 0.96734 0.98808 0.94959 1.21467 0.93555 0.97140 1.00177 1.21349 1.01764 0.94747 0.93451 1.21082 0.92493 1.00959 0.98445 1.19407 0.95934 0.95829 0.91836 1.67767 1.12244 1.22079 1.14138 0.92881 0.92197 0.91412 0.90577 0.93099 0.79828 0.94137 0.91985 0.94462 0.84235 0.90856 0.82936 0.79851 0.81864 0.82013 0.82474 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 7.61 71.98 0.55 -3.06 16 2 C 0.15 4.50 3.49 44.98 0.16 4.65 16 3 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 4 C -0.12 -4.31 4.85 30.68 0.15 -4.17 16 5 C 0.17 7.09 2.73 45.02 0.12 7.21 16 6 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 7 N -0.74 -38.06 5.12 -322.80 -1.65 -39.72 16 8 C -0.24 -13.16 9.93 84.04 0.83 -12.32 16 9 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 11 N -0.97 -60.46 13.06 21.65 0.28 -60.17 16 12 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 15 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 16 C -0.14 -5.14 5.64 30.53 0.17 -4.97 16 17 C 0.09 2.75 5.95 86.22 0.51 3.26 16 18 N -0.58 -18.23 2.98 -798.74 -2.38 -20.61 16 19 C 0.56 17.64 7.48 86.91 0.65 18.29 16 20 O -0.55 -18.45 11.94 -3.70 -0.04 -18.50 16 21 C 0.10 2.65 6.45 42.31 0.27 2.92 16 22 C -0.14 -3.08 9.53 22.36 0.21 -2.87 16 23 C -0.05 -0.72 9.88 22.48 0.22 -0.49 16 24 C -0.10 -1.80 5.75 -21.22 -0.12 -1.92 16 25 C -0.10 -1.09 9.77 22.31 0.22 -0.88 16 26 C -0.11 -0.97 9.96 22.07 0.22 -0.75 16 27 C -0.09 -1.11 9.94 22.03 0.22 -0.89 16 28 C -0.11 -2.02 9.99 22.38 0.22 -1.80 16 29 C 0.09 2.08 6.61 40.47 0.27 2.35 16 30 N -0.45 -12.00 6.31 -177.76 -1.12 -13.12 16 31 H 0.05 1.72 6.75 -2.38 -0.02 1.70 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.07 2.03 6.73 -2.39 -0.02 2.01 16 34 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.37 20.76 7.80 -92.71 -0.72 20.04 16 37 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.14 4.22 4.00 -55.93 -0.22 4.00 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.15 3.04 7.77 -2.91 -0.02 3.02 16 43 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.16 0.69 8.06 -2.91 -0.02 0.67 16 45 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 46 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 47 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.13 375.89 2.51 -69.62 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: 0.05 Total: 33.46 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 5.35 Total: 0.50 kcal Atomic # 7 Polarization: -128.75 SS G_CDS: -4.87 Total: -133.62 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.13 2.51 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044831766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.754 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds