Wall clock time and date at job start Tue Mar 31 2020 22:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.70061 * 2 1 4 4 C 1.53192 * 109.58750 * 120.35611 * 2 1 3 5 5 C 1.53042 * 109.31246 * 65.15432 * 4 2 1 6 6 H 1.09000 * 109.44885 * 301.34931 * 5 4 2 7 7 N 1.46499 * 109.45834 * 181.38495 * 5 4 2 8 8 C 1.36941 * 119.99585 * 154.93424 * 7 5 4 9 9 H 1.07996 * 120.00291 * 359.72355 * 8 7 5 10 10 C 1.38812 * 119.99781 * 179.72383 * 8 7 5 11 11 N 1.31622 * 120.00027 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46820 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47013 * 120.00063 * 12 10 8 15 15 H 1.48494 * 109.47441 * 240.00226 * 12 10 8 16 16 C 1.53039 * 109.53504 * 61.36366 * 5 4 2 17 17 C 1.53185 * 109.31519 * 298.63655 * 16 5 4 18 18 N 1.46922 * 109.58895 * 239.64794 * 2 1 3 19 19 C 1.34782 * 120.63258 * 113.84419 * 18 2 1 20 20 O 1.21598 * 119.99702 * 355.76188 * 19 18 2 21 21 C 1.47454 * 119.99868 * 175.76959 * 19 18 2 22 22 C 1.38860 * 120.46153 * 54.73520 * 21 19 18 23 23 C 1.38897 * 120.67424 * 180.02562 * 22 21 19 24 24 C 1.36373 * 121.27490 * 359.97337 * 23 22 21 25 25 C 1.40397 * 119.98455 * 0.02562 * 24 23 22 26 26 C 1.40461 * 121.95031 * 179.97438 * 25 24 23 27 27 N 1.31278 * 119.88322 * 179.97438 * 26 25 24 28 28 C 1.32553 * 122.73490 * 0.02562 * 27 26 25 29 29 C 1.36334 * 121.81684 * 0.02562 * 28 27 26 30 30 C 1.40294 * 118.70334 * 359.68199 * 29 28 27 31 31 H 1.09007 * 109.47169 * 180.35361 * 1 2 3 32 32 H 1.08993 * 109.47486 * 300.35170 * 1 2 3 33 33 H 1.09001 * 109.47490 * 60.35557 * 1 2 3 34 34 H 1.09001 * 109.49541 * 305.20178 * 4 2 1 35 35 H 1.09000 * 109.50046 * 185.10717 * 4 2 1 36 36 H 0.96996 * 120.00396 * 334.65692 * 7 5 4 37 37 H 0.97000 * 120.00015 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49851 * 58.59403 * 16 5 4 39 39 H 1.09009 * 109.49541 * 178.68038 * 16 5 4 40 40 H 1.09008 * 109.58819 * 174.42653 * 17 16 5 41 41 H 1.08998 * 109.58728 * 294.70259 * 17 16 5 42 42 H 1.07997 * 119.66507 * 359.97313 * 22 21 19 43 43 H 1.08007 * 119.36219 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.01114 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.05902 * 0.02562 * 26 25 24 46 46 H 1.07999 * 119.09589 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.64734 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6415 -2.2041 1.1701 6 1 0.5565 -2.2814 1.0992 7 7 2.1024 -2.8978 2.3753 8 6 1.4642 -4.0333 2.7981 9 1 0.6183 -4.4148 2.2455 10 6 1.9045 -4.6938 3.9368 11 7 2.9350 -4.2284 4.6105 12 14 1.0335 -6.2422 4.5140 13 1 -0.0865 -6.5537 3.5900 14 1 1.9938 -7.3748 4.5264 15 1 0.5013 -6.0295 5.8838 16 6 2.2801 -2.8463 -0.0636 17 6 1.7693 -2.1409 -1.3237 18 7 2.0225 -0.6994 -1.1945 19 6 2.6945 -0.0316 -2.1532 20 8 2.8313 1.1739 -2.0721 21 6 3.2635 -0.7628 -3.3002 22 6 2.4582 -1.5773 -4.0854 23 6 2.9896 -2.2685 -5.1666 24 6 4.3108 -2.1696 -5.4900 25 6 5.1618 -1.3576 -4.7236 26 6 6.5287 -1.2261 -5.0191 27 7 7.2875 -0.4550 -4.2754 28 6 6.8208 0.2215 -3.2355 29 6 5.5096 0.1592 -2.8672 30 6 4.6358 -0.6403 -3.6191 31 1 -0.3634 -1.0277 0.0063 32 1 -0.3634 0.5192 0.8867 33 1 -0.3634 0.5083 -0.8931 34 1 1.6074 -0.2784 2.1368 35 1 3.1297 -0.6503 1.2914 36 1 2.8621 -2.5551 2.8716 37 1 3.2429 -4.6902 5.4060 38 1 3.3640 -2.7474 -0.0053 39 1 2.0124 -3.9022 -0.1038 40 1 2.2945 -2.5273 -2.1972 41 1 0.6993 -2.3176 -1.4331 42 1 1.4082 -1.6749 -3.8525 43 1 2.3438 -2.8957 -5.7633 44 1 4.7023 -2.7158 -6.3354 45 1 6.9545 -1.7577 -5.8572 46 1 7.4978 0.8392 -2.6641 47 1 5.1496 0.7182 -2.0161 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044859116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:27 Heat of formation + Delta-G solvation = 35.345009 kcal Electronic energy + Delta-G solvation = -29567.023715 eV Core-core repulsion = 25714.788618 eV Total energy + Delta-G solvation = -3852.235097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.36818 -40.03831 -37.81596 -37.31149 -34.61211 -33.43114 -32.49910 -31.86221 -31.32619 -29.98089 -29.27890 -27.36298 -25.03385 -24.27655 -23.93616 -23.54552 -22.96282 -21.61431 -20.47146 -18.65979 -18.39318 -17.58030 -17.07772 -16.92594 -16.70374 -15.89158 -15.18549 -14.98929 -14.86633 -14.54340 -14.40102 -14.07721 -13.98206 -13.81197 -13.58028 -13.51699 -13.10134 -12.89791 -12.84802 -12.60954 -12.32244 -12.22268 -11.84390 -11.76191 -11.56297 -11.33017 -10.97951 -10.92600 -10.81044 -10.51551 -10.45930 -10.20653 -9.93916 -9.78083 -9.67750 -9.66002 -9.34365 -8.94767 -8.60974 -8.30484 -7.02090 -5.81800 -3.11232 -0.05944 0.61244 1.49692 2.47842 2.73463 3.02119 3.38976 3.44316 3.46973 3.82061 4.12777 4.22229 4.38283 4.44627 4.53276 4.57626 4.65675 4.80537 4.96015 5.04722 5.13786 5.18115 5.25137 5.28790 5.38978 5.43802 5.52344 5.53081 5.58293 5.63434 5.70153 5.71110 5.76028 5.84749 5.94891 6.00436 6.06895 6.12822 6.22655 6.31795 6.34731 6.40741 6.46246 6.48359 6.57259 6.83603 6.99200 7.38783 7.64337 7.74216 8.06272 8.36248 9.47628 10.04947 10.39412 11.40734 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.003024 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.932868 B = 9256.644011 C = 9742.624642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.096 0.904 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.931 5.931 12 Si 0.905 3.095 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.291 1.291 16 C -0.151 4.151 17 C 0.097 3.903 18 N -0.590 5.590 19 C 0.561 3.439 20 O -0.539 6.539 21 C -0.112 4.112 22 C -0.064 4.064 23 C -0.125 4.125 24 C -0.068 4.068 25 C -0.116 4.116 26 C 0.144 3.856 27 N -0.487 5.487 28 C 0.079 3.921 29 C -0.144 4.144 30 C 0.009 3.991 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.316 6.319 -21.329 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.173 4.173 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.579 5.579 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.192 4.192 17 C -0.026 4.026 18 N -0.321 5.321 19 C 0.349 3.651 20 O -0.417 6.417 21 C -0.115 4.115 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.088 4.088 25 C -0.118 4.118 26 C -0.027 4.027 27 N -0.194 5.194 28 C -0.064 4.064 29 C -0.163 4.163 30 C 0.004 3.996 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.167 6.993 -21.261 22.412 hybrid contribution -1.089 -1.045 0.807 1.711 sum 0.078 5.949 -20.455 21.302 Atomic orbital electron populations 1.22139 0.94801 1.02857 1.02035 1.21247 0.94229 0.97049 0.83616 0.88571 1.22225 1.01373 0.97319 0.96348 1.20195 0.96798 0.89084 0.87027 0.93032 1.42443 1.37705 1.29514 1.26745 1.19260 1.09975 1.01142 1.06748 0.91137 1.24749 0.98420 0.99460 0.98222 1.69672 1.27313 1.41218 1.19725 0.86148 0.78660 0.83151 0.78404 1.20551 1.21883 1.21856 1.22680 1.01247 1.00533 0.94721 1.22101 1.00976 0.79198 1.00327 1.48200 1.54150 1.09748 1.20040 1.18084 0.78033 0.86864 0.82125 1.90787 1.59787 1.13631 1.77508 1.19869 0.93570 1.00124 0.97944 1.21471 1.00074 0.93021 0.93792 1.20841 0.95749 1.00212 0.97481 1.21131 0.93370 0.96080 0.98201 1.18979 0.96054 0.99825 0.96964 1.23215 0.88549 0.93864 0.97118 1.67428 1.39657 1.06799 1.05548 1.22250 0.93811 0.96772 0.93531 1.22047 0.94450 0.98936 1.00904 1.17839 0.92378 0.95289 0.94130 0.91570 0.91176 0.92823 0.90365 0.91860 0.78284 0.93519 0.92258 0.90596 0.90008 0.91173 0.84701 0.84743 0.84481 0.81787 0.82707 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.03 37.16 0.34 -1.61 16 2 C 0.14 1.97 3.19 -67.60 -0.22 1.76 16 3 H 0.10 1.41 7.03 -51.93 -0.36 1.04 16 4 C -0.13 -2.15 5.02 -26.61 -0.13 -2.29 16 5 C 0.18 3.30 2.52 -67.89 -0.17 3.12 16 6 H 0.05 0.95 6.43 -51.93 -0.33 0.62 16 7 N -0.72 -17.38 5.12 -53.39 -0.27 -17.65 16 8 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 12 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 16 C -0.15 -2.47 5.66 -26.62 -0.15 -2.62 16 17 C 0.10 1.23 5.13 -3.72 -0.02 1.21 16 18 N -0.59 -8.04 2.68 -166.48 -0.45 -8.49 16 19 C 0.56 8.15 6.50 -12.50 -0.08 8.07 16 20 O -0.54 -9.26 15.28 5.28 0.08 -9.18 16 21 C -0.11 -1.41 4.89 -104.70 -0.51 -1.92 16 22 C -0.06 -0.61 7.43 -39.11 -0.29 -0.90 16 23 C -0.12 -0.95 9.92 -40.01 -0.40 -1.35 16 24 C -0.07 -0.53 9.79 -39.44 -0.39 -0.91 16 25 C -0.12 -1.22 5.74 -106.88 -0.61 -1.84 16 26 C 0.14 1.43 11.05 -16.95 -0.19 1.25 16 27 N -0.49 -5.87 10.30 -13.11 -0.14 -6.01 16 28 C 0.08 0.95 11.07 -17.93 -0.20 0.75 16 29 C -0.14 -1.89 9.30 -39.49 -0.37 -2.26 16 30 C 0.01 0.12 5.77 -106.55 -0.61 -0.49 16 31 H 0.07 0.82 5.73 -51.92 -0.30 0.52 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.38 9.98 7.80 -40.82 -0.32 9.66 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 40 H 0.08 0.93 4.76 -51.92 -0.25 0.68 16 41 H 0.07 0.79 7.51 -51.93 -0.39 0.40 16 42 H 0.14 1.07 7.39 -52.49 -0.39 0.69 16 43 H 0.13 0.64 8.06 -52.48 -0.42 0.21 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 45 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.14 1.98 6.61 -52.49 -0.35 1.64 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -32.86 375.23 -10.13 -42.98 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.46 Total: 9.81 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.25 Total: -7.02 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.13 Total: -59.06 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.86 -10.13 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044859116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.328 kcal (2) G-P(sol) polarization free energy of solvation -32.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds