Wall clock time and date at job start Tue Mar 31 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58811 * 2 1 4 4 C 1.53196 * 109.58282 * 239.72266 * 2 1 3 5 5 C 1.53047 * 109.31251 * 294.84557 * 4 2 1 6 6 H 1.09001 * 109.45831 * 58.64350 * 5 4 2 7 7 N 1.46497 * 109.46261 * 178.61513 * 5 4 2 8 8 C 1.36937 * 120.00087 * 205.02623 * 7 5 4 9 9 H 1.07996 * 119.99966 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00023 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99566 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00248 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47127 * 89.99871 * 12 10 8 14 14 H 1.48506 * 109.46766 * 330.00046 * 12 10 8 15 15 H 1.48496 * 109.47191 * 210.00141 * 12 10 8 16 16 C 1.53038 * 109.52773 * 298.63138 * 5 4 2 17 17 C 1.53197 * 109.31349 * 61.38118 * 16 5 4 18 18 N 1.46920 * 108.76650 * 305.34941 * 17 16 5 19 19 C 1.34782 * 120.63228 * 233.59154 * 18 17 16 20 20 O 1.21606 * 120.00240 * 174.30156 * 19 18 17 21 21 C 1.47461 * 119.99498 * 354.30767 * 19 18 17 22 22 C 1.38856 * 120.46025 * 305.90177 * 21 19 18 23 23 C 1.38895 * 120.67787 * 180.02562 * 22 21 19 24 24 C 1.36372 * 121.27339 * 0.02562 * 23 22 21 25 25 C 1.40403 * 119.97969 * 359.97438 * 24 23 22 26 26 C 1.40470 * 121.94389 * 179.97438 * 25 24 23 27 27 N 1.31280 * 119.88273 * 180.02562 * 26 25 24 28 28 C 1.32552 * 122.72982 * 0.02562 * 27 26 25 29 29 C 1.36334 * 121.82276 * 359.97438 * 28 27 26 30 30 C 1.40294 * 118.70302 * 359.77465 * 29 28 27 31 31 H 1.08994 * 109.47446 * 180.28164 * 1 2 3 32 32 H 1.08997 * 109.46525 * 300.28020 * 1 2 3 33 33 H 1.08997 * 109.47059 * 60.27774 * 1 2 3 34 34 H 1.09001 * 109.49826 * 174.90133 * 4 2 1 35 35 H 1.08995 * 109.50492 * 54.79707 * 4 2 1 36 36 H 0.96999 * 119.99816 * 25.03125 * 7 5 4 37 37 H 0.96998 * 120.00100 * 359.97438 * 11 10 8 38 38 H 1.08995 * 109.50223 * 181.32350 * 16 5 4 39 39 H 1.09006 * 109.49838 * 301.42090 * 16 5 4 40 40 H 1.08999 * 109.58968 * 185.56278 * 17 16 5 41 41 H 1.08999 * 109.71358 * 65.20214 * 17 16 5 42 42 H 1.08005 * 119.66024 * 0.02847 * 22 21 19 43 43 H 1.07998 * 119.36522 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.01123 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.06064 * 0.04300 * 26 25 24 46 46 H 1.07997 * 119.09029 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.65082 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6414 -2.2026 -1.1731 6 1 0.5564 -2.2800 -1.1021 7 7 2.1022 -2.8947 -2.3793 8 6 1.4644 -4.0300 -2.8031 9 1 0.6215 -4.4149 -2.2484 10 6 1.9007 -4.6855 -3.9463 11 7 2.9277 -4.2160 -4.6226 12 14 1.0304 -6.2337 -4.5249 13 1 -0.0674 -5.8662 -5.4550 14 1 0.4670 -6.9519 -3.3535 15 1 1.9995 -7.1137 -5.2259 16 6 2.2802 -2.8463 0.0596 17 6 1.7692 -2.1428 1.3208 18 7 2.0226 -0.7012 1.1935 19 6 2.6937 -0.0344 2.1534 20 8 2.9877 1.1342 1.9900 21 6 3.0717 -0.7222 3.4019 22 6 2.1116 -1.3727 4.1656 23 6 2.4625 -2.0215 5.3425 24 6 3.7530 -2.0397 5.7832 25 6 4.7564 -1.3948 5.0427 26 6 6.0982 -1.3872 5.4583 27 7 7.0036 -0.7710 4.7346 28 6 6.7114 -0.1403 3.6059 29 6 5.4390 -0.0908 3.1188 30 6 4.4176 -0.7319 3.8358 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 3.1297 -0.6487 -1.2923 35 1 1.6075 -0.2757 -2.1373 36 1 2.8590 -2.5488 -2.8777 37 1 3.3794 -3.4118 -4.3224 38 1 2.0127 -3.9022 0.0985 39 1 3.3642 -2.7471 0.0013 40 1 2.2944 -2.5304 2.1937 41 1 0.6990 -2.3173 1.4311 42 1 1.0815 -1.3743 3.8410 43 1 1.6987 -2.5211 5.9198 44 1 4.0029 -2.5500 6.7016 45 1 6.3845 -1.8877 6.3715 46 1 7.5032 0.3472 3.0566 47 1 5.2222 0.4281 2.1968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044859118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:31 Heat of formation + Delta-G solvation = 33.899013 kcal Electronic energy + Delta-G solvation = -29573.618456 eV Core-core repulsion = 25721.320656 eV Total energy + Delta-G solvation = -3852.297800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.39626 -40.08608 -37.88690 -37.33841 -34.84650 -33.47186 -32.55227 -31.97611 -31.38855 -30.00994 -29.11581 -27.31977 -25.03263 -24.19647 -23.89448 -23.50720 -23.09733 -21.73943 -20.56175 -18.70231 -18.38611 -17.63110 -17.31316 -16.95524 -16.79287 -15.99611 -15.21870 -14.96288 -14.76796 -14.65322 -14.46356 -14.34402 -14.00268 -13.81809 -13.69506 -13.56404 -13.23858 -12.98157 -12.93500 -12.65678 -12.34194 -12.28850 -11.93376 -11.85806 -11.65707 -11.34215 -10.98984 -10.86939 -10.60746 -10.49599 -10.47445 -10.07735 -9.98285 -9.91933 -9.70436 -9.40232 -9.21073 -8.95107 -8.65246 -8.34854 -7.09266 -6.14448 -3.15139 -0.09820 0.57769 1.45434 2.43769 2.70641 2.96365 3.47859 3.52518 3.66560 3.78332 4.08778 4.18525 4.34804 4.41655 4.53925 4.60881 4.62973 4.77096 4.89542 5.00306 5.09173 5.09906 5.18696 5.23540 5.34682 5.40183 5.48335 5.49754 5.55522 5.59380 5.64296 5.67602 5.69075 5.77621 5.91224 5.93494 6.03071 6.04149 6.14986 6.22779 6.27970 6.33002 6.36950 6.43284 6.50605 6.76313 6.91145 7.33622 7.70707 7.75484 8.01547 8.71017 9.17557 10.04037 10.19038 11.33783 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002977 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.379754 B = 9404.463440 C = 9852.062889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.097 0.903 4 C -0.135 4.135 5 C 0.185 3.815 6 H 0.053 0.947 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.150 4.150 17 C 0.103 3.897 18 N -0.591 5.591 19 C 0.562 3.438 20 O -0.538 6.538 21 C -0.113 4.113 22 C -0.061 4.061 23 C -0.125 4.125 24 C -0.067 4.067 25 C -0.116 4.116 26 C 0.144 3.856 27 N -0.486 5.486 28 C 0.079 3.921 29 C -0.144 4.144 30 C 0.008 3.992 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.366 0.634 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 6.421 22.303 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.115 0.885 4 C -0.174 4.174 5 C 0.075 3.925 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.223 1.223 14 H -0.222 1.222 15 H -0.214 1.214 16 C -0.191 4.191 17 C -0.020 4.020 18 N -0.323 5.323 19 C 0.349 3.651 20 O -0.416 6.416 21 C -0.116 4.116 22 C -0.081 4.081 23 C -0.143 4.143 24 C -0.087 4.087 25 C -0.118 4.118 26 C -0.027 4.027 27 N -0.194 5.194 28 C -0.063 4.063 29 C -0.164 4.164 30 C 0.003 3.997 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.199 0.801 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.152 0.848 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.277 5.831 21.239 22.027 hybrid contribution -0.702 1.151 0.741 1.538 sum -0.979 6.982 21.980 23.083 Atomic orbital electron populations 1.22149 0.94752 1.02885 1.02088 1.21226 0.94126 0.97126 0.83682 0.88455 1.22233 1.01289 0.97341 0.96497 1.20128 0.96867 0.88859 0.86682 0.92923 1.42448 1.37777 1.30172 1.27302 1.20040 1.12802 1.03229 1.10251 0.91740 1.25763 0.99392 1.04393 0.94648 1.70849 1.22127 1.24392 1.41454 0.83212 0.75010 0.75169 0.75361 1.22308 1.22159 1.21393 1.22652 1.01084 1.00622 0.94712 1.21980 1.00963 0.79048 1.00021 1.48199 1.54471 1.09653 1.19995 1.18109 0.77733 0.86256 0.82961 1.90789 1.54678 1.16338 1.79788 1.19866 0.93489 1.01366 0.96885 1.21453 0.99342 0.93323 0.94013 1.20841 0.96887 1.00085 0.96461 1.21139 0.92302 0.96458 0.98841 1.18987 0.96126 1.00984 0.95750 1.23227 0.87309 0.94156 0.98043 1.67434 1.37682 1.07954 1.06329 1.22254 0.95631 0.96128 0.92325 1.22053 0.93391 0.99452 1.01490 1.17858 0.92602 0.95600 0.93671 0.91566 0.92785 0.91123 0.91952 0.90507 0.80051 0.93316 0.90526 0.92403 0.90271 0.91244 0.84786 0.84734 0.84453 0.81757 0.82700 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.02 37.16 0.34 -1.60 16 2 C 0.14 1.97 3.21 -67.60 -0.22 1.76 16 3 H 0.10 1.43 7.00 -51.93 -0.36 1.06 16 4 C -0.13 -2.18 5.02 -26.61 -0.13 -2.32 16 5 C 0.18 3.45 2.52 -67.89 -0.17 3.28 16 6 H 0.05 1.00 6.44 -51.93 -0.33 0.67 16 7 N -0.74 -17.75 5.12 -53.38 -0.27 -18.02 16 8 C -0.33 -9.01 9.93 -15.06 -0.15 -9.16 16 9 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 10 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 11 N -0.94 -28.82 13.70 55.49 0.76 -28.06 16 12 Si 1.08 25.46 29.92 -169.99 -5.09 20.37 16 13 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.15 -2.50 5.66 -26.61 -0.15 -2.65 16 17 C 0.10 1.32 5.16 -3.71 -0.02 1.30 16 18 N -0.59 -8.07 2.68 -166.46 -0.45 -8.52 16 19 C 0.56 8.14 6.50 -12.50 -0.08 8.06 16 20 O -0.54 -9.26 15.23 5.27 0.08 -9.18 16 21 C -0.11 -1.41 4.62 -104.70 -0.48 -1.89 16 22 C -0.06 -0.58 7.77 -39.11 -0.30 -0.89 16 23 C -0.12 -0.93 9.92 -40.01 -0.40 -1.32 16 24 C -0.07 -0.51 9.79 -39.44 -0.39 -0.89 16 25 C -0.12 -1.20 5.74 -106.88 -0.61 -1.82 16 26 C 0.14 1.41 11.05 -16.95 -0.19 1.22 16 27 N -0.49 -5.81 10.30 -13.11 -0.14 -5.94 16 28 C 0.08 0.95 11.07 -17.93 -0.20 0.75 16 29 C -0.14 -1.89 9.29 -39.49 -0.37 -2.25 16 30 C 0.01 0.11 5.77 -106.55 -0.61 -0.51 16 31 H 0.07 0.82 5.72 -51.93 -0.30 0.52 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.37 9.30 6.63 -40.82 -0.27 9.03 16 37 H 0.26 7.71 6.77 -40.82 -0.28 7.43 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.93 5.39 -51.93 -0.28 0.65 16 41 H 0.07 0.79 7.49 -51.93 -0.39 0.40 16 42 H 0.13 1.06 7.75 -52.48 -0.41 0.66 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.14 1.99 6.58 -52.49 -0.35 1.65 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -33.90 374.50 -10.09 -43.99 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.40 Total: 10.00 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -4.23 Total: -10.29 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.09 Total: -60.54 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.09 Total: 20.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.90 -10.09 -43.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044859118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.892 kcal (2) G-P(sol) polarization free energy of solvation -33.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds