Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.58811 * 2 1 4 4 C 1.53196 * 109.58282 * 239.72266 * 2 1 3 5 5 C 1.53047 * 109.31251 * 294.84557 * 4 2 1 6 6 H 1.09001 * 109.45831 * 58.64350 * 5 4 2 7 7 N 1.46497 * 109.46261 * 178.61513 * 5 4 2 8 8 C 1.36937 * 120.00087 * 205.02623 * 7 5 4 9 9 H 1.07996 * 119.99966 * 0.02562 * 8 7 5 10 10 C 1.38814 * 120.00023 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99566 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00248 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47127 * 89.99871 * 12 10 8 14 14 H 1.48506 * 109.46766 * 330.00046 * 12 10 8 15 15 H 1.48496 * 109.47191 * 210.00141 * 12 10 8 16 16 C 1.53038 * 109.52773 * 298.63138 * 5 4 2 17 17 C 1.53197 * 109.31349 * 61.38118 * 16 5 4 18 18 N 1.46920 * 108.76650 * 305.34941 * 17 16 5 19 19 C 1.34782 * 120.63228 * 233.59154 * 18 17 16 20 20 O 1.21606 * 120.00240 * 174.30156 * 19 18 17 21 21 C 1.47461 * 119.99498 * 354.30767 * 19 18 17 22 22 C 1.38856 * 120.46025 * 305.90177 * 21 19 18 23 23 C 1.38895 * 120.67787 * 180.02562 * 22 21 19 24 24 C 1.36372 * 121.27339 * 0.02562 * 23 22 21 25 25 C 1.40403 * 119.97969 * 359.97438 * 24 23 22 26 26 C 1.40470 * 121.94389 * 179.97438 * 25 24 23 27 27 N 1.31280 * 119.88273 * 180.02562 * 26 25 24 28 28 C 1.32552 * 122.72982 * 0.02562 * 27 26 25 29 29 C 1.36334 * 121.82276 * 359.97438 * 28 27 26 30 30 C 1.40294 * 118.70302 * 359.77465 * 29 28 27 31 31 H 1.08994 * 109.47446 * 180.28164 * 1 2 3 32 32 H 1.08997 * 109.46525 * 300.28020 * 1 2 3 33 33 H 1.08997 * 109.47059 * 60.27774 * 1 2 3 34 34 H 1.09001 * 109.49826 * 174.90133 * 4 2 1 35 35 H 1.08995 * 109.50492 * 54.79707 * 4 2 1 36 36 H 0.96999 * 119.99816 * 25.03125 * 7 5 4 37 37 H 0.96998 * 120.00100 * 359.97438 * 11 10 8 38 38 H 1.08995 * 109.50223 * 181.32350 * 16 5 4 39 39 H 1.09006 * 109.49838 * 301.42090 * 16 5 4 40 40 H 1.08999 * 109.58968 * 185.56278 * 17 16 5 41 41 H 1.08999 * 109.71358 * 65.20214 * 17 16 5 42 42 H 1.08005 * 119.66024 * 0.02847 * 22 21 19 43 43 H 1.07998 * 119.36522 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.01123 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.06064 * 0.04300 * 26 25 24 46 46 H 1.07997 * 119.09029 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.65082 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7277 -1.2465 5 6 1.6414 -2.2026 -1.1731 6 1 0.5564 -2.2800 -1.1021 7 7 2.1022 -2.8947 -2.3793 8 6 1.4644 -4.0300 -2.8031 9 1 0.6215 -4.4149 -2.2484 10 6 1.9007 -4.6855 -3.9463 11 7 2.9277 -4.2160 -4.6226 12 14 1.0304 -6.2337 -4.5249 13 1 -0.0674 -5.8662 -5.4550 14 1 0.4670 -6.9519 -3.3535 15 1 1.9995 -7.1137 -5.2259 16 6 2.2802 -2.8463 0.0596 17 6 1.7692 -2.1428 1.3208 18 7 2.0226 -0.7012 1.1935 19 6 2.6937 -0.0344 2.1534 20 8 2.9877 1.1342 1.9900 21 6 3.0717 -0.7222 3.4019 22 6 2.1116 -1.3727 4.1656 23 6 2.4625 -2.0215 5.3425 24 6 3.7530 -2.0397 5.7832 25 6 4.7564 -1.3948 5.0427 26 6 6.0982 -1.3872 5.4583 27 7 7.0036 -0.7710 4.7346 28 6 6.7114 -0.1403 3.6059 29 6 5.4390 -0.0908 3.1188 30 6 4.4176 -0.7319 3.8358 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3632 0.5182 0.8875 33 1 -0.3633 0.5095 -0.8924 34 1 3.1297 -0.6487 -1.2923 35 1 1.6075 -0.2757 -2.1373 36 1 2.8590 -2.5488 -2.8777 37 1 3.3794 -3.4118 -4.3224 38 1 2.0127 -3.9022 0.0985 39 1 3.3642 -2.7471 0.0013 40 1 2.2944 -2.5304 2.1937 41 1 0.6990 -2.3173 1.4311 42 1 1.0815 -1.3743 3.8410 43 1 1.6987 -2.5211 5.9198 44 1 4.0029 -2.5500 6.7016 45 1 6.3845 -1.8877 6.3715 46 1 7.5032 0.3472 3.0566 47 1 5.2222 0.4281 2.1968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044859118.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = 13.017857 kcal Electronic energy + Delta-G solvation = -29574.523931 eV Core-core repulsion = 25721.320656 eV Total energy + Delta-G solvation = -3853.203275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.28016 -41.13981 -39.11839 -38.18307 -36.56791 -34.44250 -33.86620 -33.37315 -32.18449 -31.09194 -30.51060 -28.63690 -26.05892 -25.56297 -24.84595 -24.72379 -24.30393 -23.05736 -21.69348 -19.89671 -19.29886 -19.21354 -18.58452 -17.84137 -17.77306 -17.02490 -16.48154 -16.20956 -16.06499 -15.82472 -15.53064 -15.47348 -15.26454 -15.04861 -14.83954 -14.67988 -14.51612 -14.19820 -13.93423 -13.65232 -13.41458 -13.08943 -13.05558 -12.90796 -12.75487 -12.66099 -12.49515 -12.39144 -12.17846 -12.03184 -11.86767 -11.53435 -11.31587 -11.10229 -11.03007 -10.88084 -10.56972 -10.14517 -9.83244 -9.17356 -9.10330 -8.37874 -5.32613 -0.85094 -0.18602 0.62098 1.44837 1.58840 1.69559 1.78314 1.82986 2.04813 2.71958 2.99053 3.19875 3.40962 3.42282 3.55798 3.60593 3.71628 3.74651 3.79911 3.88592 3.89485 3.96563 4.11288 4.16640 4.20217 4.31917 4.40835 4.42389 4.47996 4.55434 4.63696 4.68735 4.68967 4.70461 4.86124 4.90037 4.93159 4.94083 5.03156 5.14809 5.21199 5.24166 5.30800 5.41392 5.50235 5.56065 5.61586 5.75082 6.23139 6.48806 6.89156 6.92267 7.08638 7.98182 8.12204 9.13777 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002977 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.379754 B = 9404.463440 C = 9852.062889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.182 3.818 6 H 0.059 0.941 7 N -0.751 5.751 8 C -0.323 4.323 9 H 0.073 0.927 10 C -0.108 4.108 11 N -0.980 5.980 12 Si 1.129 2.871 13 H -0.286 1.286 14 H -0.268 1.268 15 H -0.298 1.298 16 C -0.140 4.140 17 C 0.115 3.885 18 N -0.591 5.591 19 C 0.562 3.438 20 O -0.576 6.576 21 C -0.153 4.153 22 C -0.046 4.046 23 C -0.125 4.125 24 C -0.048 4.048 25 C -0.132 4.132 26 C 0.156 3.844 27 N -0.514 5.514 28 C 0.076 3.924 29 C -0.177 4.177 30 C -0.010 4.010 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.355 0.645 37 H 0.242 0.758 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.182 0.818 45 H 0.208 0.792 46 H 0.164 0.836 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.456 4.568 26.213 26.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.164 4.164 5 C 0.074 3.926 6 H 0.077 0.923 7 N -0.392 5.392 8 C -0.454 4.454 9 H 0.091 0.909 10 C -0.299 4.299 11 N -0.628 5.628 12 Si 0.954 3.046 13 H -0.213 1.213 14 H -0.193 1.193 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.008 4.008 18 N -0.322 5.322 19 C 0.352 3.648 20 O -0.457 6.457 21 C -0.156 4.156 22 C -0.065 4.065 23 C -0.142 4.142 24 C -0.067 4.067 25 C -0.135 4.135 26 C -0.015 4.015 27 N -0.222 5.222 28 C -0.066 4.066 29 C -0.196 4.196 30 C -0.016 4.016 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.186 0.814 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.170 0.830 43 H 0.193 0.807 44 H 0.199 0.801 45 H 0.224 0.776 46 H 0.181 0.819 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.632 3.997 25.203 25.654 hybrid contribution 0.021 1.748 -0.331 1.779 sum -2.611 5.745 24.872 25.660 Atomic orbital electron populations 1.22086 0.92525 1.03248 1.03172 1.21130 0.95708 0.96197 0.82737 0.89433 1.22099 1.00085 0.96233 0.97950 1.20356 0.97094 0.89703 0.85475 0.92297 1.42717 1.37422 1.30052 1.28999 1.20404 1.12174 1.03339 1.09531 0.90916 1.27185 0.99779 1.07356 0.95567 1.70968 1.24118 1.24845 1.42903 0.82608 0.74086 0.72012 0.75902 1.21272 1.19322 1.22480 1.22442 0.99506 1.00332 0.95814 1.21956 1.02584 0.77994 0.98257 1.48220 1.54391 1.09902 1.19693 1.18528 0.76673 0.85882 0.83738 1.90755 1.55919 1.18208 1.80799 1.19737 0.94325 1.04442 0.97053 1.21821 0.99414 0.91340 0.93954 1.21307 0.97914 0.99336 0.95662 1.21676 0.91468 0.94292 0.99273 1.19299 0.97338 1.01485 0.95330 1.23982 0.86854 0.92267 0.98397 1.67511 1.38596 1.09414 1.06683 1.22401 0.95476 0.96039 0.92700 1.21934 0.94616 1.01486 1.01613 1.18099 0.92601 0.96079 0.94795 0.91404 0.91325 0.90501 0.93900 0.90834 0.81406 0.94779 0.91454 0.94749 0.88498 0.88448 0.82993 0.80701 0.80056 0.77582 0.81901 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.02 71.98 0.65 -2.77 16 2 C 0.15 4.09 3.21 44.98 0.14 4.23 16 3 H 0.09 2.67 7.00 -2.39 -0.02 2.66 16 4 C -0.12 -4.19 5.02 30.68 0.15 -4.04 16 5 C 0.18 6.84 2.52 45.02 0.11 6.95 16 6 H 0.06 2.17 6.44 -2.39 -0.02 2.15 16 7 N -0.75 -37.21 5.12 -322.81 -1.65 -38.86 16 8 C -0.32 -17.59 9.93 84.03 0.83 -16.75 16 9 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 10 C -0.11 -6.21 5.50 84.86 0.47 -5.74 16 11 N -0.98 -61.70 13.70 21.65 0.30 -61.40 16 12 Si 1.13 51.14 29.92 68.60 2.05 53.19 16 13 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 16 C -0.14 -4.68 5.66 30.67 0.17 -4.50 16 17 C 0.11 2.75 5.16 86.37 0.45 3.19 16 18 N -0.59 -15.94 2.68 -798.82 -2.14 -18.08 16 19 C 0.56 16.58 6.50 86.67 0.56 17.14 16 20 O -0.58 -20.98 15.23 -4.05 -0.06 -21.04 16 21 C -0.15 -3.67 4.62 -19.92 -0.09 -3.76 16 22 C -0.05 -0.71 7.77 22.58 0.18 -0.53 16 23 C -0.12 -1.19 9.92 21.99 0.22 -0.97 16 24 C -0.05 -0.47 9.79 22.36 0.22 -0.26 16 25 C -0.13 -2.41 5.74 -21.33 -0.12 -2.53 16 26 C 0.16 2.67 11.05 85.32 0.94 3.61 16 27 N -0.51 -12.02 10.30 -195.39 -2.01 -14.03 16 28 C 0.08 1.92 11.07 84.14 0.93 2.85 16 29 C -0.18 -5.00 9.29 22.33 0.21 -4.80 16 30 C -0.01 -0.25 5.77 -21.11 -0.12 -0.38 16 31 H 0.07 1.50 5.72 -2.39 -0.01 1.49 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.35 18.96 6.63 -92.71 -0.61 18.35 16 37 H 0.24 15.31 6.77 -92.71 -0.63 14.68 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.10 2.04 5.39 -2.39 -0.01 2.03 16 41 H 0.10 1.86 7.49 -2.39 -0.02 1.84 16 42 H 0.15 1.75 7.75 -2.91 -0.02 1.72 16 43 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 45 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 46 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 47 H 0.12 3.78 6.58 -2.91 -0.02 3.77 16 Total: -1.00 -78.63 374.50 2.91 -75.72 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: 0.53 Total: 33.55 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.90 Total: -9.05 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.51 Total: -132.37 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.05 Total: 53.19 kcal Total: -78.63 2.91 -75.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044859118.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.737 kcal (2) G-P(sol) polarization free energy of solvation -78.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds