Wall clock time and date at job start Tue Mar 31 2020 22:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58265 * 2 1 4 4 C 1.53187 * 109.70290 * 239.63688 * 2 1 3 5 5 C 1.53038 * 109.31207 * 185.50737 * 4 2 1 6 6 H 1.09003 * 109.46297 * 301.35976 * 5 4 2 7 7 N 1.46504 * 109.46314 * 181.39149 * 5 4 2 8 8 C 1.36933 * 120.00199 * 155.00441 * 7 5 4 9 9 H 1.07998 * 120.00081 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99817 * 180.02562 * 8 7 5 11 11 N 1.31617 * 120.00278 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00019 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47327 * 59.99213 * 12 10 8 14 14 H 1.48500 * 109.47180 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47062 * 299.99230 * 12 10 8 16 16 C 1.53035 * 109.53975 * 61.36812 * 5 4 2 17 17 C 1.53626 * 109.23998 * 298.51200 * 16 5 4 18 18 N 1.46928 * 108.54566 * 54.85785 * 17 16 5 19 19 C 1.34766 * 120.63432 * 126.36879 * 18 17 16 20 20 O 1.21607 * 119.99925 * 185.49099 * 19 18 17 21 21 C 1.47452 * 120.00076 * 5.48717 * 19 18 17 22 22 C 1.38856 * 120.45862 * 54.11084 * 21 19 18 23 23 C 1.38902 * 120.67708 * 179.97438 * 22 21 19 24 24 C 1.36375 * 121.27026 * 0.04227 * 23 22 21 25 25 C 1.40400 * 119.98793 * 359.97438 * 24 23 22 26 26 C 1.40466 * 121.95788 * 179.97438 * 25 24 23 27 27 N 1.31282 * 119.87901 * 180.02562 * 26 25 24 28 28 C 1.32546 * 122.73683 * 359.97438 * 27 26 25 29 29 C 1.36332 * 121.82332 * 0.02562 * 28 27 26 30 30 C 1.40295 * 118.69428 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47606 * 304.43812 * 1 2 3 32 32 H 1.09001 * 109.47031 * 64.43600 * 1 2 3 33 33 H 1.09004 * 109.47175 * 184.43577 * 1 2 3 34 34 H 1.08992 * 109.50099 * 305.46306 * 4 2 1 35 35 H 1.09001 * 109.49561 * 65.52829 * 4 2 1 36 36 H 0.96996 * 119.99549 * 334.99441 * 7 5 4 37 37 H 0.96999 * 120.00523 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.49838 * 58.58168 * 16 5 4 39 39 H 1.08999 * 109.50087 * 178.68585 * 16 5 4 40 40 H 1.09002 * 109.74054 * 295.11396 * 17 16 5 41 41 H 1.09003 * 109.66655 * 174.54886 * 17 16 5 42 42 H 1.08005 * 119.66401 * 0.02562 * 22 21 19 43 43 H 1.07992 * 119.36672 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.00640 * 180.02562 * 24 23 22 45 45 H 1.07998 * 120.05944 * 0.04662 * 26 25 24 46 46 H 1.08007 * 119.09145 * 180.02562 * 28 27 26 47 47 H 1.07998 * 120.65148 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7290 -1.2444 5 6 3.5705 -0.8445 -1.1672 6 1 4.0071 0.1518 -1.0962 7 7 4.0711 -1.5118 -2.3716 8 6 5.3556 -1.2924 -2.7921 9 1 5.9997 -0.6271 -2.2363 10 6 5.8297 -1.9243 -3.9336 11 7 5.0447 -2.7346 -4.6113 12 14 7.5818 -1.6245 -4.5077 13 1 8.5298 -2.0449 -3.4448 14 1 7.8402 -2.4112 -5.7404 15 1 7.7684 -0.1794 -4.7941 16 6 3.9602 -1.6607 0.0672 17 6 3.4659 -0.9374 1.3292 18 7 2.0225 -0.6980 1.1955 19 6 1.1671 -1.1058 2.1538 20 8 -0.0321 -0.9920 1.9869 21 6 1.6853 -1.6900 3.4045 22 6 2.6173 -1.0017 4.1698 23 6 3.1080 -1.5476 5.3490 24 6 2.6934 -2.7697 5.7896 25 6 1.7524 -3.5011 5.0474 26 6 1.2970 -4.7635 5.4623 27 7 0.4164 -5.4122 4.7362 28 6 -0.0776 -4.9270 3.6060 29 6 0.3010 -3.7111 3.1193 30 6 1.2396 -2.9591 3.8416 31 1 -0.3634 0.5812 0.8475 32 1 -0.3633 0.4435 -0.9271 33 1 -0.3634 -1.0246 0.0795 34 1 1.6079 -1.7257 -1.2903 35 1 1.7684 -0.1677 -2.1364 36 1 3.4926 -2.1091 -2.8710 37 1 5.3760 -3.1765 -5.4087 38 1 3.5036 -2.6488 0.0090 39 1 5.0446 -1.7624 0.1088 40 1 3.9860 0.0147 1.4353 41 1 3.6537 -1.5582 2.2052 42 1 2.9636 -0.0315 3.8452 43 1 3.8321 -0.9936 5.9279 44 1 3.0881 -3.1746 6.7098 45 1 1.6705 -5.1995 6.3771 46 1 -0.8001 -5.5112 3.0552 47 1 -0.1135 -3.3343 2.1960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044859120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:35 Heat of formation + Delta-G solvation = 48.392825 kcal Electronic energy + Delta-G solvation = -29581.153703 eV Core-core repulsion = 25729.484402 eV Total energy + Delta-G solvation = -3851.669301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39669 -40.13152 -37.65097 -37.27614 -34.57489 -33.61054 -32.46989 -31.97618 -31.35760 -29.99095 -29.17648 -27.08948 -24.94865 -24.33507 -23.88682 -23.55946 -22.90091 -21.59111 -20.19974 -19.29780 -18.33708 -17.47349 -17.13686 -16.93515 -16.41417 -15.88061 -15.35051 -15.03239 -14.86545 -14.62300 -14.39277 -14.11177 -13.95125 -13.82760 -13.71510 -13.28594 -13.14934 -12.91636 -12.66776 -12.42063 -12.20911 -12.19646 -12.01571 -11.64685 -11.57779 -11.43628 -10.92976 -10.86554 -10.82854 -10.49548 -10.44267 -10.30057 -9.90070 -9.77146 -9.72342 -9.37796 -9.09338 -8.94379 -8.51167 -8.30499 -7.02078 -5.80950 -3.10599 -0.06253 0.61083 1.49105 2.48452 2.75023 3.02376 3.40072 3.44647 3.45992 3.81747 4.12840 4.21852 4.38382 4.45200 4.53594 4.57551 4.65898 4.80447 4.98418 5.05651 5.10995 5.19522 5.28988 5.32030 5.41265 5.44475 5.50576 5.53235 5.58766 5.63474 5.70987 5.76835 5.86486 5.94808 5.96640 6.06093 6.08883 6.21278 6.29927 6.34169 6.39777 6.42894 6.47057 6.49418 6.69954 6.84866 6.99538 7.41186 7.63903 7.73720 8.10833 8.37037 9.48249 10.05382 10.40084 11.41441 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013393 B = 0.002974 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.215436 B = 9412.537631 C = 9870.804794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.073 0.927 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.150 4.150 17 C 0.102 3.898 18 N -0.593 5.593 19 C 0.560 3.440 20 O -0.529 6.529 21 C -0.114 4.114 22 C -0.063 4.063 23 C -0.125 4.125 24 C -0.069 4.069 25 C -0.116 4.116 26 C 0.144 3.856 27 N -0.487 5.487 28 C 0.078 3.922 29 C -0.143 4.143 30 C 0.009 3.991 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.165 0.835 46 H 0.155 0.845 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 2.462 21.983 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.191 4.191 17 C -0.021 4.021 18 N -0.325 5.325 19 C 0.348 3.652 20 O -0.407 6.407 21 C -0.117 4.117 22 C -0.083 4.083 23 C -0.143 4.143 24 C -0.089 4.089 25 C -0.118 4.118 26 C -0.028 4.028 27 N -0.194 5.194 28 C -0.064 4.064 29 C -0.163 4.163 30 C 0.003 3.997 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.547 1.747 21.924 23.253 hybrid contribution 1.334 0.724 -0.859 1.744 sum -6.214 2.471 21.066 22.101 Atomic orbital electron populations 1.22211 0.92734 1.03791 1.00487 1.21376 0.95500 0.95058 0.83656 0.90912 1.22295 0.97578 1.01017 0.96485 1.20162 0.90860 0.94970 0.87126 0.93431 1.42415 1.12943 1.54282 1.26713 1.19176 0.89140 1.22362 1.06654 0.91229 1.24747 0.98150 0.99753 0.98139 1.69648 1.35507 1.33334 1.19485 0.86286 0.84567 0.77483 0.77939 1.21271 1.21686 1.21245 1.22753 1.01726 1.00003 0.94594 1.22103 0.79157 1.00689 1.00123 1.48183 1.07736 1.56744 1.19819 1.18104 0.86204 0.78057 0.82869 1.90864 1.14992 1.55717 1.79156 1.19991 0.99330 0.95309 0.97064 1.21457 0.93219 0.99600 0.94030 1.20841 1.00771 0.96173 0.96474 1.21128 0.94721 0.94183 0.98858 1.18985 0.99802 0.97205 0.95854 1.23214 0.91851 0.89697 0.98048 1.67425 1.09966 1.35736 1.06306 1.22251 0.98239 0.93623 0.92329 1.22053 0.97260 0.95530 1.01411 1.17859 0.95201 0.93039 0.93627 0.91531 0.93680 0.90977 0.91746 0.90485 0.78242 0.93403 0.92206 0.90582 0.91266 0.90256 0.84825 0.84814 0.84533 0.81826 0.82737 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.60 37.16 0.28 -1.58 16 2 C 0.15 2.04 3.48 -67.60 -0.24 1.80 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.13 -2.19 4.85 -26.61 -0.13 -2.32 16 5 C 0.18 3.34 2.73 -67.89 -0.19 3.16 16 6 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 7 N -0.72 -17.52 5.12 -53.39 -0.27 -17.79 16 8 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 12 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 C -0.15 -2.47 5.67 -26.39 -0.15 -2.62 16 17 C 0.10 1.30 5.61 -3.48 -0.02 1.28 16 18 N -0.59 -7.98 2.97 -166.20 -0.49 -8.47 16 19 C 0.56 7.82 6.41 -12.51 -0.08 7.74 16 20 O -0.53 -8.44 11.20 5.27 0.06 -8.38 16 21 C -0.11 -1.39 4.63 -104.70 -0.48 -1.87 16 22 C -0.06 -0.59 7.76 -39.11 -0.30 -0.90 16 23 C -0.12 -0.93 9.92 -40.01 -0.40 -1.32 16 24 C -0.07 -0.52 9.79 -39.44 -0.39 -0.91 16 25 C -0.12 -1.20 5.74 -106.88 -0.61 -1.81 16 26 C 0.14 1.41 11.05 -16.95 -0.19 1.22 16 27 N -0.49 -5.80 10.30 -13.11 -0.14 -5.94 16 28 C 0.08 0.93 11.07 -17.93 -0.20 0.73 16 29 C -0.14 -1.83 9.29 -39.50 -0.37 -2.20 16 30 C 0.01 0.11 5.77 -106.55 -0.61 -0.51 16 31 H 0.07 0.95 6.82 -51.93 -0.35 0.59 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 1.10 6.67 -51.93 -0.35 0.76 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.92 5.38 -51.93 -0.28 0.64 16 42 H 0.13 1.05 7.75 -52.48 -0.41 0.64 16 43 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 45 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 46 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 47 H 0.14 1.94 6.58 -52.49 -0.35 1.60 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -32.29 374.75 -10.47 -42.76 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.67 Total: 9.50 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -4.31 Total: -7.19 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.18 Total: -59.24 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.06 Total: -8.38 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.29 -10.47 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044859120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.156 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds