Wall clock time and date at job start Tue Mar 31 2020 22:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70200 * 2 1 4 4 C 1.53196 * 109.58610 * 120.35528 * 2 1 3 5 5 C 1.53039 * 109.31035 * 174.42153 * 4 2 1 6 6 H 1.09002 * 109.46105 * 178.61526 * 5 4 2 7 7 N 1.46498 * 109.46060 * 58.65535 * 5 4 2 8 8 C 1.36940 * 120.00143 * 154.99930 * 7 5 4 9 9 H 1.08004 * 119.99711 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99965 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99999 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47001 * 59.99666 * 12 10 8 14 14 H 1.48496 * 109.46757 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47147 * 299.99928 * 12 10 8 16 16 C 1.53039 * 109.53772 * 298.63728 * 5 4 2 17 17 C 1.52759 * 109.38750 * 61.24208 * 16 5 4 18 18 N 1.46918 * 109.58612 * 239.64290 * 2 1 3 19 19 C 1.34785 * 120.63085 * 6.58279 * 18 2 1 20 20 O 1.21595 * 120.00187 * 4.88944 * 19 18 2 21 21 C 1.47445 * 119.99886 * 184.88894 * 19 18 2 22 22 C 1.38951 * 121.17441 * 324.53342 * 21 19 18 23 23 N 1.32191 * 121.31481 * 179.97438 * 22 21 19 24 24 C 1.31193 * 123.70390 * 0.02562 * 23 22 21 25 25 C 1.40388 * 120.91441 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.15087 * 180.02562 * 25 24 23 27 27 C 1.36236 * 119.48252 * 179.97438 * 26 25 24 28 28 C 1.39290 * 121.10793 * 0.25775 * 27 26 25 29 29 C 1.36436 * 120.94800 * 359.49717 * 28 27 26 30 30 C 1.39690 * 119.43310 * 0.46827 * 29 28 27 31 31 H 1.09002 * 109.46797 * 173.09774 * 1 2 3 32 32 H 1.09004 * 109.46725 * 293.09624 * 1 2 3 33 33 H 1.08994 * 109.47289 * 53.09551 * 1 2 3 34 34 H 1.08991 * 109.49835 * 294.37356 * 4 2 1 35 35 H 1.09000 * 109.50024 * 54.43745 * 4 2 1 36 36 H 0.97003 * 120.00361 * 335.00218 * 7 5 4 37 37 H 0.96998 * 120.00122 * 180.02562 * 11 10 8 38 38 H 1.09009 * 109.49511 * 181.31962 * 16 5 4 39 39 H 1.08999 * 109.49812 * 301.40904 * 16 5 4 40 40 H 1.08995 * 109.51186 * 185.70834 * 17 16 5 41 41 H 1.08997 * 109.42951 * 65.42044 * 17 16 5 42 42 H 1.08004 * 119.34112 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.54578 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.26109 * 359.95565 * 26 25 24 45 45 H 1.08003 * 119.44266 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.52160 * 179.74572 * 28 27 26 47 47 H 1.07998 * 120.28700 * 180.26315 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1701 6 1 3.9379 -1.3448 2.0668 7 7 4.1570 0.4898 1.0749 8 6 5.4414 0.7038 1.4989 9 1 6.0197 -0.1136 1.9039 10 6 5.9999 1.9715 1.4092 11 7 5.2950 2.9676 0.9161 12 14 7.7517 2.2635 1.9882 13 1 8.6802 1.4063 1.2082 14 1 8.1083 3.6908 1.7860 15 1 7.8592 1.9254 3.4302 16 6 3.9569 -1.6657 -0.0635 17 6 3.4645 -0.9519 -1.3211 18 7 2.0225 -0.6995 -1.1944 19 6 1.1673 -1.1070 -2.1531 20 8 -0.0118 -0.8193 -2.0784 21 6 1.6614 -1.9015 -3.2927 22 6 2.9185 -1.6719 -3.8384 23 7 3.3645 -2.3829 -4.8596 24 6 2.6782 -3.3424 -5.4337 25 6 1.3923 -3.6791 -4.9819 26 6 0.6354 -4.7012 -5.5764 27 6 -0.6069 -4.9829 -5.0935 28 6 -1.1416 -4.2703 -4.0228 29 6 -0.4316 -3.2742 -3.4185 30 6 0.8458 -2.9596 -3.8881 31 1 -0.3633 -1.0203 -0.1235 32 1 -0.3633 0.4032 0.9454 33 1 -0.3633 0.6171 -0.8217 34 1 1.7661 -0.1669 2.1368 35 1 1.6026 -1.7251 1.2917 36 1 3.6376 1.2240 0.7116 37 1 5.6853 3.8534 0.8531 38 1 5.0413 -1.7696 -0.1037 39 1 3.4984 -2.6528 -0.0053 40 1 3.6503 -1.5797 -2.1925 41 1 3.9929 -0.0049 -1.4310 42 1 3.5440 -0.8976 -3.4192 43 1 3.1083 -3.8807 -6.2653 44 1 1.0347 -5.2595 -6.4101 45 1 -1.1888 -5.7691 -5.5516 46 1 -2.1308 -4.5124 -3.6633 47 1 -0.8549 -2.7314 -2.5863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044873120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:11 Heat of formation + Delta-G solvation = 69.070249 kcal Electronic energy + Delta-G solvation = -29980.860673 eV Core-core repulsion = 26130.088013 eV Total energy + Delta-G solvation = -3850.772661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24599 -39.91087 -37.62203 -37.42669 -34.29662 -33.63174 -32.10005 -31.91819 -31.38015 -29.73355 -29.07607 -27.17638 -25.19022 -24.22456 -23.77377 -23.39993 -23.00649 -21.61850 -20.13888 -18.60128 -18.44792 -17.58740 -17.24868 -16.72586 -16.13358 -15.73412 -15.42933 -15.00485 -14.65033 -14.48832 -14.10018 -14.02501 -13.90827 -13.85132 -13.68157 -13.23628 -13.06827 -12.86471 -12.50969 -12.36263 -12.16305 -12.03071 -11.96762 -11.47433 -11.39311 -11.12312 -10.90624 -10.81221 -10.65967 -10.41793 -10.31849 -10.18722 -9.97732 -9.77684 -9.64512 -9.27965 -8.96062 -8.85826 -8.30917 -8.15796 -7.01535 -5.80906 -3.10197 -0.04742 0.68275 1.50445 2.70983 2.93757 3.17328 3.41329 3.46492 3.47188 3.86996 4.14598 4.31595 4.41275 4.50398 4.55854 4.63582 4.74559 4.93192 5.03293 5.13662 5.25051 5.31723 5.34875 5.44165 5.49975 5.54160 5.56328 5.66775 5.73201 5.75189 5.84809 5.85485 5.97392 6.07808 6.13038 6.13940 6.22370 6.26261 6.35359 6.39784 6.46679 6.55696 6.59565 6.69672 6.74030 6.80708 7.00547 7.63677 7.66248 7.73568 8.30229 8.37439 9.48891 10.04845 10.39871 11.41382 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.003169 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.549854 B = 8834.703878 C = 9788.666282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.287 1.287 16 C -0.148 4.148 17 C 0.083 3.917 18 N -0.585 5.585 19 C 0.563 3.437 20 O -0.536 6.536 21 C -0.164 4.164 22 C 0.104 3.896 23 N -0.492 5.492 24 C 0.166 3.834 25 C -0.120 4.120 26 C -0.088 4.088 27 C -0.121 4.121 28 C -0.099 4.099 29 C -0.102 4.102 30 C 0.011 3.989 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.179 0.821 43 H 0.165 0.835 44 H 0.134 0.866 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 -16.116 -11.616 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.207 4.207 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.190 4.190 17 C -0.039 4.039 18 N -0.316 5.316 19 C 0.351 3.649 20 O -0.416 6.416 21 C -0.169 4.169 22 C -0.039 4.039 23 N -0.199 5.199 24 C -0.006 4.006 25 C -0.122 4.122 26 C -0.108 4.108 27 C -0.139 4.139 28 C -0.118 4.118 29 C -0.119 4.119 30 C 0.006 3.994 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.196 0.804 43 H 0.182 0.818 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.794 -15.600 -11.659 22.266 hybrid contribution 0.233 0.244 0.525 0.624 sum -10.561 -15.356 -11.133 21.709 Atomic orbital electron populations 1.22193 0.93133 1.03112 1.00751 1.21313 0.94901 0.96118 0.83296 0.89871 1.22247 0.97444 1.00214 0.97295 1.20194 0.90391 0.88149 0.94966 0.93069 1.42501 1.13785 1.04640 1.75491 1.19183 0.89774 0.94141 1.34115 0.91249 1.24721 0.98260 0.95883 1.01840 1.69635 1.36580 1.00641 1.51165 0.86299 0.84739 0.76853 0.78456 1.21271 1.21756 1.21343 1.22435 1.01541 0.97924 0.97054 1.22515 0.79244 1.02423 0.99713 1.48089 1.07815 1.55865 1.19870 1.17813 0.85785 0.79488 0.81857 1.90785 1.16474 1.57375 1.76944 1.22059 0.96145 0.99204 0.99526 1.23434 0.92037 0.97648 0.90789 1.67193 1.36800 1.06559 1.09327 1.23277 0.89236 0.91697 0.96406 1.18988 0.96855 0.98801 0.97597 1.20957 0.94419 0.96072 0.99320 1.20950 0.95900 1.00049 0.97027 1.21098 1.00074 0.95071 0.95589 1.21281 0.92978 0.97007 1.00662 1.18851 0.94008 0.93115 0.93445 0.92032 0.93804 0.90787 0.90577 0.92126 0.78140 0.93412 0.90607 0.93386 0.89092 0.89053 0.80431 0.81808 0.84792 0.85550 0.85442 0.83523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.61 37.16 0.28 -1.80 16 2 C 0.15 2.42 3.20 -67.60 -0.22 2.21 16 3 H 0.08 1.57 6.64 -51.93 -0.34 1.22 16 4 C -0.13 -2.17 5.07 -26.61 -0.13 -2.30 16 5 C 0.17 3.23 3.10 -67.89 -0.21 3.02 16 6 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 7 N -0.72 -16.74 4.31 -53.38 -0.23 -16.97 16 8 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 9 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 10 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 11 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 12 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.15 -2.47 5.76 -26.83 -0.15 -2.62 16 17 C 0.08 1.32 4.80 -3.93 -0.02 1.31 16 18 N -0.59 -9.42 2.98 -166.73 -0.50 -9.92 16 19 C 0.56 9.04 7.05 -12.51 -0.09 8.96 16 20 O -0.54 -9.27 10.35 5.28 0.05 -9.22 16 21 C -0.16 -2.39 5.68 -102.66 -0.58 -2.98 16 22 C 0.10 1.44 8.66 -17.13 -0.15 1.30 16 23 N -0.49 -6.45 10.22 -12.69 -0.13 -6.58 16 24 C 0.17 1.75 11.00 -17.02 -0.19 1.56 16 25 C -0.12 -1.32 5.74 -106.89 -0.61 -1.94 16 26 C -0.09 -0.72 9.82 -39.49 -0.39 -1.11 16 27 C -0.12 -0.96 9.94 -39.91 -0.40 -1.36 16 28 C -0.10 -0.93 9.96 -39.84 -0.40 -1.33 16 29 C -0.10 -1.25 9.27 -39.69 -0.37 -1.62 16 30 C 0.01 0.15 5.90 -104.74 -0.62 -0.47 16 31 H 0.06 0.96 6.82 -51.93 -0.35 0.61 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.23 6.67 -51.93 -0.35 0.89 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.38 9.51 6.06 -40.82 -0.25 9.26 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 1.33 8.14 -51.92 -0.42 0.90 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.31 3.49 -52.18 -0.18 1.12 16 41 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 42 H 0.18 2.43 5.46 -52.48 -0.29 2.14 16 43 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 46 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.15 1.97 6.07 -52.49 -0.32 1.65 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -30.68 365.86 -10.32 -41.01 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.25 Total: 11.84 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.48 Total: -6.02 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.13 Total: -59.90 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.05 Total: -9.22 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.68 -10.32 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.078 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds