Wall clock time and date at job start Tue Mar 31 2020 22:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70200 * 2 1 4 4 C 1.53196 * 109.58610 * 120.35528 * 2 1 3 5 5 C 1.53039 * 109.31035 * 174.42153 * 4 2 1 6 6 H 1.09002 * 109.46105 * 178.61526 * 5 4 2 7 7 N 1.46498 * 109.46060 * 58.65535 * 5 4 2 8 8 C 1.36940 * 120.00143 * 154.99930 * 7 5 4 9 9 H 1.08004 * 119.99711 * 359.97438 * 8 7 5 10 10 C 1.38817 * 119.99965 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99999 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47001 * 59.99666 * 12 10 8 14 14 H 1.48496 * 109.46757 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47147 * 299.99928 * 12 10 8 16 16 C 1.53039 * 109.53772 * 298.63728 * 5 4 2 17 17 C 1.52759 * 109.38750 * 61.24208 * 16 5 4 18 18 N 1.46918 * 109.58612 * 239.64290 * 2 1 3 19 19 C 1.34785 * 120.63085 * 6.58279 * 18 2 1 20 20 O 1.21595 * 120.00187 * 4.88944 * 19 18 2 21 21 C 1.47445 * 119.99886 * 184.88894 * 19 18 2 22 22 C 1.38951 * 121.17441 * 324.53342 * 21 19 18 23 23 N 1.32191 * 121.31481 * 179.97438 * 22 21 19 24 24 C 1.31193 * 123.70390 * 0.02562 * 23 22 21 25 25 C 1.40388 * 120.91441 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.15087 * 180.02562 * 25 24 23 27 27 C 1.36236 * 119.48252 * 179.97438 * 26 25 24 28 28 C 1.39290 * 121.10793 * 0.25775 * 27 26 25 29 29 C 1.36436 * 120.94800 * 359.49717 * 28 27 26 30 30 C 1.39690 * 119.43310 * 0.46827 * 29 28 27 31 31 H 1.09002 * 109.46797 * 173.09774 * 1 2 3 32 32 H 1.09004 * 109.46725 * 293.09624 * 1 2 3 33 33 H 1.08994 * 109.47289 * 53.09551 * 1 2 3 34 34 H 1.08991 * 109.49835 * 294.37356 * 4 2 1 35 35 H 1.09000 * 109.50024 * 54.43745 * 4 2 1 36 36 H 0.97003 * 120.00361 * 335.00218 * 7 5 4 37 37 H 0.96998 * 120.00122 * 180.02562 * 11 10 8 38 38 H 1.09009 * 109.49511 * 181.31962 * 16 5 4 39 39 H 1.08999 * 109.49812 * 301.40904 * 16 5 4 40 40 H 1.08995 * 109.51186 * 185.70834 * 17 16 5 41 41 H 1.08997 * 109.42951 * 65.42044 * 17 16 5 42 42 H 1.08004 * 119.34112 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.54578 * 179.97438 * 24 23 22 44 44 H 1.07993 * 120.26109 * 359.95565 * 26 25 24 45 45 H 1.08003 * 119.44266 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.52160 * 179.74572 * 28 27 26 47 47 H 1.07998 * 120.28700 * 180.26315 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1701 6 1 3.9379 -1.3448 2.0668 7 7 4.1570 0.4898 1.0749 8 6 5.4414 0.7038 1.4989 9 1 6.0197 -0.1136 1.9039 10 6 5.9999 1.9715 1.4092 11 7 5.2950 2.9676 0.9161 12 14 7.7517 2.2635 1.9882 13 1 8.6802 1.4063 1.2082 14 1 8.1083 3.6908 1.7860 15 1 7.8592 1.9254 3.4302 16 6 3.9569 -1.6657 -0.0635 17 6 3.4645 -0.9519 -1.3211 18 7 2.0225 -0.6995 -1.1944 19 6 1.1673 -1.1070 -2.1531 20 8 -0.0118 -0.8193 -2.0784 21 6 1.6614 -1.9015 -3.2927 22 6 2.9185 -1.6719 -3.8384 23 7 3.3645 -2.3829 -4.8596 24 6 2.6782 -3.3424 -5.4337 25 6 1.3923 -3.6791 -4.9819 26 6 0.6354 -4.7012 -5.5764 27 6 -0.6069 -4.9829 -5.0935 28 6 -1.1416 -4.2703 -4.0228 29 6 -0.4316 -3.2742 -3.4185 30 6 0.8458 -2.9596 -3.8881 31 1 -0.3633 -1.0203 -0.1235 32 1 -0.3633 0.4032 0.9454 33 1 -0.3633 0.6171 -0.8217 34 1 1.7661 -0.1669 2.1368 35 1 1.6026 -1.7251 1.2917 36 1 3.6376 1.2240 0.7116 37 1 5.6853 3.8534 0.8531 38 1 5.0413 -1.7696 -0.1037 39 1 3.4984 -2.6528 -0.0053 40 1 3.6503 -1.5797 -2.1925 41 1 3.9929 -0.0049 -1.4310 42 1 3.5440 -0.8976 -3.4192 43 1 3.1083 -3.8807 -6.2653 44 1 1.0347 -5.2595 -6.4101 45 1 -1.1888 -5.7691 -5.5516 46 1 -2.1308 -4.5124 -3.6633 47 1 -0.8549 -2.7314 -2.5863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044873120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:10 Heat of formation + Delta-G solvation = 51.595341 kcal Electronic energy + Delta-G solvation = -29981.618442 eV Core-core repulsion = 26130.088013 eV Total energy + Delta-G solvation = -3851.530430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.29410 -41.01292 -38.88331 -38.40323 -35.93422 -34.80626 -33.73843 -33.07846 -32.19397 -30.99173 -30.49215 -28.57147 -26.28100 -25.68554 -25.23625 -24.52556 -23.96482 -22.81585 -21.41115 -19.95020 -19.41507 -19.18846 -18.47319 -17.80397 -17.13760 -16.88655 -16.80437 -16.36995 -15.84494 -15.71736 -15.50124 -15.46132 -15.02983 -14.87660 -14.81428 -14.59234 -14.34969 -14.09662 -13.76371 -13.50909 -13.36162 -13.22367 -12.94787 -12.86398 -12.78138 -12.61692 -12.53446 -12.18517 -12.14956 -12.04216 -11.86563 -11.61279 -11.44220 -11.11440 -10.90746 -10.71015 -10.08000 -10.06691 -9.60896 -9.11643 -8.96352 -7.90863 -5.18602 -0.91471 -0.15138 0.67270 1.49103 1.50671 1.56628 1.63980 1.84190 2.10877 2.58359 3.01145 3.19546 3.39705 3.42543 3.51503 3.70684 3.80726 3.83979 3.88361 3.90822 3.98545 4.05035 4.25481 4.27365 4.31051 4.32186 4.42843 4.47620 4.56437 4.63210 4.67302 4.74696 4.81222 4.87902 4.99995 5.03619 5.05741 5.08429 5.19069 5.21599 5.29514 5.35914 5.40958 5.48750 5.52942 5.56223 5.65545 5.89060 6.30592 6.35878 6.82370 7.04716 7.37818 8.12728 8.36653 9.32170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017424 B = 0.003169 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.549854 B = 8834.703878 C = 9788.666282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.146 3.854 3 H 0.054 0.946 4 C -0.121 4.121 5 C 0.167 3.833 6 H 0.051 0.949 7 N -0.730 5.730 8 C -0.233 4.233 9 H 0.076 0.924 10 C -0.073 4.073 11 N -0.969 5.969 12 Si 0.967 3.033 13 H -0.278 1.278 14 H -0.301 1.301 15 H -0.281 1.281 16 C -0.139 4.139 17 C 0.093 3.907 18 N -0.588 5.588 19 C 0.562 3.438 20 O -0.553 6.553 21 C -0.192 4.192 22 C 0.102 3.898 23 N -0.519 5.519 24 C 0.183 3.817 25 C -0.135 4.135 26 C -0.072 4.072 27 C -0.122 4.122 28 C -0.084 4.084 29 C -0.138 4.138 30 C -0.007 4.007 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.373 0.627 37 H 0.249 0.751 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.169 0.831 43 H 0.209 0.791 44 H 0.177 0.823 45 H 0.165 0.835 46 H 0.150 0.850 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.759 -19.909 -13.446 26.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.044 3.956 3 H 0.072 0.928 4 C -0.160 4.160 5 C 0.059 3.941 6 H 0.069 0.931 7 N -0.371 5.371 8 C -0.365 4.365 9 H 0.094 0.906 10 C -0.265 4.265 11 N -0.620 5.620 12 Si 0.797 3.203 13 H -0.205 1.205 14 H -0.227 1.227 15 H -0.207 1.207 16 C -0.180 4.180 17 C -0.029 4.029 18 N -0.319 5.319 19 C 0.352 3.648 20 O -0.434 6.434 21 C -0.197 4.197 22 C -0.041 4.041 23 N -0.227 5.227 24 C 0.012 3.988 25 C -0.137 4.137 26 C -0.092 4.092 27 C -0.139 4.139 28 C -0.103 4.103 29 C -0.156 4.156 30 C -0.012 4.012 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.206 0.794 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.078 0.922 42 H 0.185 0.815 43 H 0.226 0.774 44 H 0.194 0.806 45 H 0.183 0.817 46 H 0.167 0.833 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.349 -19.449 -13.479 26.244 hybrid contribution 0.259 1.232 0.963 1.586 sum -11.090 -18.217 -12.516 24.728 Atomic orbital electron populations 1.22025 0.92047 1.02780 1.00853 1.21212 0.95608 0.94827 0.83971 0.92788 1.22129 0.95692 1.01250 0.96943 1.20416 0.91743 0.86218 0.95755 0.93138 1.42646 1.13035 1.06194 1.75241 1.19559 0.90786 0.94045 1.32100 0.90584 1.25449 1.01844 0.96006 1.03250 1.69799 1.38066 1.00679 1.53469 0.85310 0.80794 0.76051 0.78185 1.20453 1.22737 1.20689 1.22297 1.01139 0.98559 0.96019 1.22371 0.79017 1.01143 1.00389 1.48067 1.07791 1.56075 1.19948 1.18117 0.85490 0.79177 0.82042 1.90763 1.17195 1.58011 1.77480 1.21918 0.97082 1.00766 0.99959 1.23266 0.91719 0.97685 0.91387 1.67247 1.37612 1.08040 1.09820 1.24034 0.88733 0.90019 0.96027 1.19297 0.97484 0.99647 0.97293 1.21466 0.93922 0.94441 0.99349 1.21405 0.96145 1.00283 0.96089 1.21469 1.00516 0.93291 0.95052 1.21192 0.93609 0.99130 1.01664 1.19076 0.94391 0.93269 0.94489 0.92056 0.92344 0.92378 0.90660 0.90008 0.79363 0.94267 0.91441 0.91150 0.87132 0.92164 0.81471 0.77446 0.80561 0.81740 0.83268 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.82 7.61 71.98 0.55 -3.27 16 2 C 0.15 5.09 3.20 44.98 0.14 5.23 16 3 H 0.05 2.19 6.64 -2.39 -0.02 2.18 16 4 C -0.12 -3.98 5.07 30.67 0.16 -3.82 16 5 C 0.17 6.30 3.10 45.02 0.14 6.44 16 6 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 7 N -0.73 -34.93 4.31 -322.81 -1.39 -36.32 16 8 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 9 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 10 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 11 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 12 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 C -0.14 -4.65 5.76 30.53 0.18 -4.48 16 17 C 0.09 3.09 4.80 86.22 0.41 3.51 16 18 N -0.59 -19.83 2.98 -799.68 -2.38 -22.21 16 19 C 0.56 18.95 7.05 86.67 0.61 19.56 16 20 O -0.55 -20.16 10.35 -4.01 -0.04 -20.20 16 21 C -0.19 -5.75 5.68 -18.59 -0.11 -5.86 16 22 C 0.10 2.90 8.66 84.81 0.73 3.64 16 23 N -0.52 -13.12 10.22 -194.07 -1.98 -15.11 16 24 C 0.18 3.32 11.00 85.31 0.94 4.26 16 25 C -0.14 -2.60 5.74 -21.33 -0.12 -2.72 16 26 C -0.07 -0.83 9.82 22.33 0.22 -0.61 16 27 C -0.12 -1.35 9.94 22.06 0.22 -1.13 16 28 C -0.08 -1.36 9.96 22.10 0.22 -1.14 16 29 C -0.14 -3.33 9.27 22.20 0.21 -3.13 16 30 C -0.01 -0.18 5.90 -19.94 -0.12 -0.30 16 31 H 0.06 1.95 6.82 -2.39 -0.02 1.94 16 32 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.06 2.03 6.67 -2.39 -0.02 2.02 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.37 19.46 6.06 -92.71 -0.56 18.90 16 37 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 38 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.11 3.30 3.49 -2.62 -0.01 3.29 16 41 H 0.06 2.39 7.74 -2.39 -0.02 2.37 16 42 H 0.17 4.89 5.46 -2.91 -0.02 4.87 16 43 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 45 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 46 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 47 H 0.12 3.48 6.07 -2.91 -0.02 3.47 16 Total: -1.00 -69.94 365.86 2.64 -67.31 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: 0.45 Total: 36.16 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 5.68 Total: 0.97 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.47 Total: -131.91 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.04 Total: -20.20 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -69.94 2.64 -67.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.903 kcal (2) G-P(sol) polarization free energy of solvation -69.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds