Wall clock time and date at job start Tue Mar 31 2020 22:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.58896 * 2 1 4 4 C 1.53185 * 109.58861 * 239.71253 * 2 1 3 5 5 C 1.53042 * 109.34062 * 185.41777 * 4 2 1 6 6 H 1.09002 * 109.46216 * 181.40084 * 5 4 2 7 7 N 1.46496 * 109.46408 * 301.36303 * 5 4 2 8 8 C 1.36932 * 120.00200 * 205.00012 * 7 5 4 9 9 H 1.08001 * 120.00202 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99849 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00345 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47195 * 120.00213 * 12 10 8 15 15 H 1.48499 * 109.47296 * 240.00057 * 12 10 8 16 16 C 1.53109 * 109.50091 * 61.34896 * 5 4 2 17 17 C 1.53190 * 109.33264 * 298.65781 * 16 5 4 18 18 N 1.46927 * 108.77616 * 54.63487 * 17 16 5 19 19 C 1.34772 * 120.63044 * 126.41502 * 18 17 16 20 20 O 1.21602 * 119.99728 * 185.86175 * 19 18 17 21 21 C 1.47441 * 120.00094 * 5.86074 * 19 18 17 22 22 C 1.38949 * 121.17147 * 29.48030 * 21 19 18 23 23 N 1.32198 * 121.32143 * 179.97438 * 22 21 19 24 24 C 1.31194 * 123.69378 * 0.02562 * 23 22 21 25 25 C 1.40390 * 120.91871 * 359.97438 * 24 23 22 26 26 C 1.40390 * 122.14751 * 180.02562 * 25 24 23 27 27 C 1.36231 * 119.48859 * 179.97438 * 26 25 24 28 28 C 1.39295 * 121.10343 * 359.97438 * 27 26 25 29 29 C 1.36444 * 120.94820 * 359.97438 * 28 27 26 30 30 C 1.39698 * 119.43617 * 359.75179 * 29 28 27 31 31 H 1.09000 * 109.47264 * 183.82900 * 1 2 3 32 32 H 1.08998 * 109.47340 * 303.83143 * 1 2 3 33 33 H 1.09006 * 109.47231 * 63.82836 * 1 2 3 34 34 H 1.08998 * 109.50207 * 305.38742 * 4 2 1 35 35 H 1.09004 * 109.49845 * 65.45193 * 4 2 1 36 36 H 0.97000 * 119.99881 * 24.99230 * 7 5 4 37 37 H 0.96999 * 119.99937 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.48400 * 178.69824 * 16 5 4 39 39 H 1.08999 * 109.48505 * 58.61674 * 16 5 4 40 40 H 1.08999 * 109.58489 * 294.85002 * 17 16 5 41 41 H 1.08993 * 109.70420 * 174.49450 * 17 16 5 42 42 H 1.08000 * 119.34258 * 0.02562 * 22 21 19 43 43 H 1.08005 * 119.54279 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.25355 * 359.95003 * 26 25 24 45 45 H 1.07996 * 119.44501 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.52598 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.28104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2462 5 6 3.5678 -0.8433 -1.1736 6 1 3.9377 -1.3389 -2.0712 7 7 4.1548 0.4955 -1.0786 8 6 5.4380 0.7123 -1.5046 9 1 6.0172 -0.1036 -1.9111 10 6 5.9940 1.9811 -1.4151 11 7 5.2880 2.9756 -0.9202 12 14 7.7447 2.2768 -1.9956 13 1 8.3185 1.0056 -2.5056 14 1 7.7416 3.2890 -3.0822 15 1 8.5656 2.7710 -0.8612 16 6 3.9603 -1.6608 0.0601 17 6 3.4684 -0.9435 1.3212 18 7 2.0253 -0.6990 1.1937 19 6 1.1722 -1.1077 2.1537 20 8 -0.0274 -0.9956 1.9888 21 6 1.6933 -1.6907 3.4036 22 6 2.9318 -1.3163 3.9102 23 7 3.4017 -1.8367 5.0310 24 6 2.7578 -2.7293 5.7449 25 6 1.4949 -3.1963 5.3476 26 6 0.7831 -4.1503 6.0920 27 6 -0.4393 -4.5651 5.6563 28 6 -0.9956 -4.0580 4.4843 29 6 -0.3318 -3.1290 3.7372 30 6 0.9214 -2.6775 4.1582 31 1 -0.3634 -1.0254 0.0686 32 1 -0.3634 0.5721 0.8536 33 1 -0.3634 0.4533 -0.9223 34 1 1.6049 -1.7247 -1.2920 35 1 1.7633 -0.1658 -2.1372 36 1 3.6345 1.2284 -0.7140 37 1 5.6766 3.8621 -0.8573 38 1 5.0449 -1.7624 0.0989 39 1 3.5036 -2.6488 0.0020 40 1 3.9919 0.0065 1.4289 41 1 3.6577 -1.5661 2.1955 42 1 3.5220 -0.5848 3.3783 43 1 3.2052 -3.1097 6.6514 44 1 1.2015 -4.5526 7.0028 45 1 -0.9864 -5.2987 6.2297 46 1 -1.9666 -4.4044 4.1628 47 1 -0.7734 -2.7428 2.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044873121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:15 Heat of formation + Delta-G solvation = 65.795088 kcal Electronic energy + Delta-G solvation = -29956.916324 eV Core-core repulsion = 26106.001642 eV Total energy + Delta-G solvation = -3850.914682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.22642 -39.90649 -37.60657 -37.41086 -34.30323 -33.61197 -32.09410 -31.90007 -31.35966 -29.72448 -29.05524 -27.15903 -25.17611 -24.18714 -23.77020 -23.38968 -23.00353 -21.62797 -20.15126 -18.62300 -18.37931 -17.56081 -17.25165 -16.69485 -16.11765 -15.68766 -15.42844 -14.94081 -14.64659 -14.52653 -14.10929 -14.03268 -13.91679 -13.82908 -13.66495 -13.24276 -13.12206 -12.79079 -12.47180 -12.34707 -12.18423 -12.02773 -11.96878 -11.46183 -11.38687 -11.18197 -10.93537 -10.82004 -10.67086 -10.44786 -10.26274 -10.14446 -9.95780 -9.78776 -9.65326 -9.27248 -8.97086 -8.82604 -8.31281 -8.14532 -7.01679 -5.81551 -3.10699 -0.05142 0.69886 1.50835 2.72257 2.99145 3.16145 3.40421 3.46652 3.48597 3.89391 4.15070 4.33919 4.42198 4.51593 4.55568 4.64981 4.76858 4.94400 5.04563 5.12277 5.25861 5.33188 5.35486 5.45275 5.49537 5.55335 5.56846 5.67362 5.73053 5.76456 5.86172 5.87686 5.97139 6.07397 6.13675 6.15757 6.24114 6.28073 6.37529 6.38920 6.46669 6.55675 6.61646 6.70637 6.73468 6.81015 7.00924 7.63645 7.67016 7.74774 8.30421 8.36779 9.48479 10.04363 10.39361 11.40851 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003180 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.361098 B = 8803.555806 C = 9815.913055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.052 0.948 7 N -0.722 5.722 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.281 1.281 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.148 4.148 17 C 0.092 3.908 18 N -0.587 5.587 19 C 0.563 3.437 20 O -0.537 6.537 21 C -0.169 4.169 22 C 0.110 3.890 23 N -0.493 5.493 24 C 0.168 3.832 25 C -0.122 4.122 26 C -0.088 4.088 27 C -0.122 4.122 28 C -0.100 4.100 29 C -0.103 4.103 30 C 0.012 3.988 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.176 0.824 43 H 0.165 0.835 44 H 0.134 0.866 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 -15.152 12.532 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.044 3.956 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.219 1.219 16 C -0.189 4.189 17 C -0.030 4.030 18 N -0.318 5.318 19 C 0.352 3.648 20 O -0.417 6.417 21 C -0.174 4.174 22 C -0.033 4.033 23 N -0.200 5.200 24 C -0.004 4.004 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.140 4.140 28 C -0.119 4.119 29 C -0.120 4.120 30 C 0.007 3.993 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.193 0.807 43 H 0.182 0.818 44 H 0.152 0.848 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.533 -14.681 12.473 21.956 hybrid contribution 0.245 0.215 -0.437 0.545 sum -10.288 -14.466 12.036 21.447 Atomic orbital electron populations 1.22206 0.93043 1.03267 1.00562 1.21321 0.94954 0.95965 0.83388 0.89915 1.22246 0.97389 1.00272 0.97299 1.20212 0.90435 0.88111 0.94952 0.93033 1.42516 1.13931 1.04636 1.75364 1.19269 0.89814 0.94148 1.33794 0.91139 1.24724 0.98277 0.95900 1.01884 1.69658 1.36435 1.00623 1.51271 0.86157 0.84674 0.77650 0.77920 1.20603 1.21955 1.21890 1.22525 1.01525 0.97933 0.96957 1.22426 0.79174 1.02136 0.99278 1.48070 1.07803 1.56021 1.19890 1.17817 0.86105 0.78291 0.82618 1.90766 1.14931 1.56480 1.79518 1.22049 0.96578 1.00883 0.97849 1.23445 0.91748 0.97098 0.91049 1.67207 1.36096 1.10167 1.06513 1.23296 0.89537 0.90298 0.97313 1.19001 0.97069 0.99989 0.96347 1.20950 0.94789 0.95929 0.99139 1.20949 0.95896 1.00294 0.96824 1.21114 1.00029 0.96143 0.94627 1.21396 0.93406 0.96024 1.01205 1.18878 0.94128 0.93670 0.92658 0.91343 0.91391 0.93916 0.92061 0.90616 0.78158 0.93526 0.90612 0.93298 0.89129 0.89769 0.80729 0.81814 0.84824 0.85588 0.85474 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 7.60 37.15 0.28 -1.78 16 2 C 0.15 2.41 3.19 -67.60 -0.22 2.20 16 3 H 0.08 1.54 6.64 -51.92 -0.34 1.20 16 4 C -0.13 -2.17 5.07 -26.61 -0.13 -2.30 16 5 C 0.17 3.22 3.10 -67.85 -0.21 3.01 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.72 -16.68 4.31 -53.35 -0.23 -16.91 16 8 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 12 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 C -0.15 -2.46 5.78 -26.58 -0.15 -2.61 16 17 C 0.09 1.46 4.49 -3.71 -0.02 1.45 16 18 N -0.59 -9.40 2.97 -166.48 -0.49 -9.89 16 19 C 0.56 9.02 7.26 -12.51 -0.09 8.93 16 20 O -0.54 -9.16 9.90 5.28 0.05 -9.11 16 21 C -0.17 -2.47 5.64 -102.67 -0.58 -3.05 16 22 C 0.11 1.55 8.62 -17.13 -0.15 1.40 16 23 N -0.49 -6.57 10.22 -12.58 -0.13 -6.70 16 24 C 0.17 1.79 11.00 -17.01 -0.19 1.60 16 25 C -0.12 -1.35 5.74 -106.89 -0.61 -1.97 16 26 C -0.09 -0.73 9.82 -39.49 -0.39 -1.12 16 27 C -0.12 -0.98 9.94 -39.91 -0.40 -1.37 16 28 C -0.10 -0.95 9.96 -39.84 -0.40 -1.34 16 29 C -0.10 -1.27 9.27 -39.68 -0.37 -1.64 16 30 C 0.01 0.16 5.90 -104.74 -0.62 -0.46 16 31 H 0.07 1.08 6.72 -51.93 -0.35 0.73 16 32 H 0.07 1.12 6.79 -51.93 -0.35 0.77 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.38 9.46 6.06 -40.82 -0.25 9.21 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.66 7.63 -51.93 -0.40 1.26 16 41 H 0.08 1.21 4.11 -51.93 -0.21 1.00 16 42 H 0.18 2.45 5.43 -52.49 -0.29 2.17 16 43 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 46 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 47 H 0.15 2.05 5.85 -52.49 -0.31 1.74 16 LS Contribution 365.51 15.07 5.51 5.51 Total: -1.00 -30.49 365.51 -10.34 -40.83 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.27 Total: 11.71 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -4.48 Total: -5.87 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.13 Total: -59.82 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.05 Total: -9.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.49 -10.34 -40.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.626 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds