Wall clock time and date at job start Tue Mar 31 2020 22:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.58896 * 2 1 4 4 C 1.53185 * 109.58861 * 239.71253 * 2 1 3 5 5 C 1.53042 * 109.34062 * 185.41777 * 4 2 1 6 6 H 1.09002 * 109.46216 * 181.40084 * 5 4 2 7 7 N 1.46496 * 109.46408 * 301.36303 * 5 4 2 8 8 C 1.36932 * 120.00200 * 205.00012 * 7 5 4 9 9 H 1.08001 * 120.00202 * 0.02562 * 8 7 5 10 10 C 1.38813 * 119.99849 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00345 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99908 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47278 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47195 * 120.00213 * 12 10 8 15 15 H 1.48499 * 109.47296 * 240.00057 * 12 10 8 16 16 C 1.53109 * 109.50091 * 61.34896 * 5 4 2 17 17 C 1.53190 * 109.33264 * 298.65781 * 16 5 4 18 18 N 1.46927 * 108.77616 * 54.63487 * 17 16 5 19 19 C 1.34772 * 120.63044 * 126.41502 * 18 17 16 20 20 O 1.21602 * 119.99728 * 185.86175 * 19 18 17 21 21 C 1.47441 * 120.00094 * 5.86074 * 19 18 17 22 22 C 1.38949 * 121.17147 * 29.48030 * 21 19 18 23 23 N 1.32198 * 121.32143 * 179.97438 * 22 21 19 24 24 C 1.31194 * 123.69378 * 0.02562 * 23 22 21 25 25 C 1.40390 * 120.91871 * 359.97438 * 24 23 22 26 26 C 1.40390 * 122.14751 * 180.02562 * 25 24 23 27 27 C 1.36231 * 119.48859 * 179.97438 * 26 25 24 28 28 C 1.39295 * 121.10343 * 359.97438 * 27 26 25 29 29 C 1.36444 * 120.94820 * 359.97438 * 28 27 26 30 30 C 1.39698 * 119.43617 * 359.75179 * 29 28 27 31 31 H 1.09000 * 109.47264 * 183.82900 * 1 2 3 32 32 H 1.08998 * 109.47340 * 303.83143 * 1 2 3 33 33 H 1.09006 * 109.47231 * 63.82836 * 1 2 3 34 34 H 1.08998 * 109.50207 * 305.38742 * 4 2 1 35 35 H 1.09004 * 109.49845 * 65.45193 * 4 2 1 36 36 H 0.97000 * 119.99881 * 24.99230 * 7 5 4 37 37 H 0.96999 * 119.99937 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.48400 * 178.69824 * 16 5 4 39 39 H 1.08999 * 109.48505 * 58.61674 * 16 5 4 40 40 H 1.08999 * 109.58489 * 294.85002 * 17 16 5 41 41 H 1.08993 * 109.70420 * 174.49450 * 17 16 5 42 42 H 1.08000 * 119.34258 * 0.02562 * 22 21 19 43 43 H 1.08005 * 119.54279 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.25355 * 359.95003 * 26 25 24 45 45 H 1.07996 * 119.44501 * 180.02562 * 27 26 25 46 46 H 1.07995 * 119.52598 * 180.02562 * 28 27 26 47 47 H 1.08001 * 120.28104 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2462 5 6 3.5678 -0.8433 -1.1736 6 1 3.9377 -1.3389 -2.0712 7 7 4.1548 0.4955 -1.0786 8 6 5.4380 0.7123 -1.5046 9 1 6.0172 -0.1036 -1.9111 10 6 5.9940 1.9811 -1.4151 11 7 5.2880 2.9756 -0.9202 12 14 7.7447 2.2768 -1.9956 13 1 8.3185 1.0056 -2.5056 14 1 7.7416 3.2890 -3.0822 15 1 8.5656 2.7710 -0.8612 16 6 3.9603 -1.6608 0.0601 17 6 3.4684 -0.9435 1.3212 18 7 2.0253 -0.6990 1.1937 19 6 1.1722 -1.1077 2.1537 20 8 -0.0274 -0.9956 1.9888 21 6 1.6933 -1.6907 3.4036 22 6 2.9318 -1.3163 3.9102 23 7 3.4017 -1.8367 5.0310 24 6 2.7578 -2.7293 5.7449 25 6 1.4949 -3.1963 5.3476 26 6 0.7831 -4.1503 6.0920 27 6 -0.4393 -4.5651 5.6563 28 6 -0.9956 -4.0580 4.4843 29 6 -0.3318 -3.1290 3.7372 30 6 0.9214 -2.6775 4.1582 31 1 -0.3634 -1.0254 0.0686 32 1 -0.3634 0.5721 0.8536 33 1 -0.3634 0.4533 -0.9223 34 1 1.6049 -1.7247 -1.2920 35 1 1.7633 -0.1658 -2.1372 36 1 3.6345 1.2284 -0.7140 37 1 5.6766 3.8621 -0.8573 38 1 5.0449 -1.7624 0.0989 39 1 3.5036 -2.6488 0.0020 40 1 3.9919 0.0065 1.4289 41 1 3.6577 -1.5661 2.1955 42 1 3.5220 -0.5848 3.3783 43 1 3.2052 -3.1097 6.6514 44 1 1.2015 -4.5526 7.0028 45 1 -0.9864 -5.2987 6.2297 46 1 -1.9666 -4.4044 4.1628 47 1 -0.7734 -2.7428 2.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044873121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:14 Heat of formation + Delta-G solvation = 48.562920 kcal Electronic energy + Delta-G solvation = -29957.663567 eV Core-core repulsion = 26106.001642 eV Total energy + Delta-G solvation = -3851.661925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.27777 -41.01069 -38.86711 -38.39164 -35.93425 -34.78968 -33.73582 -33.05593 -32.18392 -31.00147 -30.45623 -28.55101 -26.26766 -25.68365 -25.21840 -24.51445 -23.95423 -22.82536 -21.42474 -19.97729 -19.34627 -19.18150 -18.44965 -17.77917 -17.11988 -16.86152 -16.78259 -16.36248 -15.79590 -15.74226 -15.53474 -15.47323 -15.02832 -14.86110 -14.79908 -14.66351 -14.34861 -14.01442 -13.72356 -13.46289 -13.42198 -13.22324 -12.95136 -12.88109 -12.82828 -12.63801 -12.55829 -12.15262 -12.07006 -12.04765 -11.89874 -11.63919 -11.41501 -11.09815 -10.91566 -10.73676 -10.07814 -10.03308 -9.59453 -9.11726 -8.95991 -7.90978 -5.18501 -0.93106 -0.14574 0.66950 1.48600 1.49592 1.58565 1.67949 1.84069 2.12411 2.58280 3.02049 3.19007 3.41623 3.43591 3.51740 3.70877 3.81322 3.84658 3.86874 3.91214 3.99252 4.05706 4.24668 4.27644 4.31191 4.32753 4.43431 4.48994 4.56721 4.62716 4.67461 4.75207 4.82785 4.90210 4.99508 5.04083 5.05904 5.10307 5.19297 5.22822 5.29028 5.37323 5.41442 5.49605 5.53813 5.57126 5.66615 5.89733 6.30846 6.36296 6.82419 7.05493 7.38101 8.12749 8.36709 9.32391 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003180 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.361098 B = 8803.555806 C = 9815.913055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.147 3.853 3 H 0.055 0.945 4 C -0.122 4.122 5 C 0.168 3.832 6 H 0.051 0.949 7 N -0.730 5.730 8 C -0.229 4.229 9 H 0.076 0.924 10 C -0.074 4.074 11 N -0.969 5.969 12 Si 0.965 3.035 13 H -0.266 1.266 14 H -0.299 1.299 15 H -0.297 1.297 16 C -0.140 4.140 17 C 0.103 3.897 18 N -0.589 5.589 19 C 0.562 3.438 20 O -0.552 6.552 21 C -0.196 4.196 22 C 0.108 3.892 23 N -0.522 5.522 24 C 0.185 3.815 25 C -0.137 4.137 26 C -0.073 4.073 27 C -0.122 4.122 28 C -0.085 4.085 29 C -0.139 4.139 30 C -0.006 4.006 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.373 0.627 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.164 0.836 43 H 0.209 0.791 44 H 0.177 0.823 45 H 0.165 0.835 46 H 0.149 0.851 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 -18.605 14.647 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.044 3.956 3 H 0.073 0.927 4 C -0.160 4.160 5 C 0.059 3.941 6 H 0.069 0.931 7 N -0.371 5.371 8 C -0.361 4.361 9 H 0.094 0.906 10 C -0.266 4.266 11 N -0.620 5.620 12 Si 0.796 3.204 13 H -0.190 1.190 14 H -0.226 1.226 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.019 4.019 18 N -0.320 5.320 19 C 0.352 3.648 20 O -0.433 6.433 21 C -0.201 4.201 22 C -0.035 4.035 23 N -0.229 5.229 24 C 0.013 3.987 25 C -0.139 4.139 26 C -0.092 4.092 27 C -0.139 4.139 28 C -0.104 4.104 29 C -0.157 4.157 30 C -0.012 4.012 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.207 0.793 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.180 0.820 43 H 0.225 0.775 44 H 0.194 0.806 45 H 0.182 0.818 46 H 0.167 0.833 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.069 -18.191 14.578 25.806 hybrid contribution 0.269 1.109 -0.949 1.485 sum -10.800 -17.081 13.629 24.375 Atomic orbital electron populations 1.22039 0.92005 1.02967 1.00580 1.21218 0.95618 0.94738 0.84012 0.92684 1.22129 0.95657 1.01268 0.96988 1.20428 0.91766 0.86183 0.95729 0.93108 1.42659 1.13170 1.06189 1.75095 1.19619 0.90801 0.93994 1.31724 0.90568 1.25438 1.01787 0.96054 1.03328 1.69813 1.37927 1.00698 1.53548 0.85180 0.80717 0.77647 0.76865 1.19046 1.22633 1.22470 1.22395 1.01150 0.98566 0.95946 1.22262 0.78984 1.00864 0.99816 1.48041 1.07751 1.56246 1.19969 1.18107 0.85875 0.77832 0.82978 1.90745 1.15520 1.57077 1.79971 1.21920 0.97462 1.02833 0.97871 1.23261 0.91510 0.97041 0.91700 1.67255 1.36952 1.11929 1.06802 1.24047 0.89016 0.88136 0.97465 1.19306 0.97607 1.00957 0.96016 1.21457 0.94318 0.93872 0.99585 1.21404 0.95992 1.00406 0.96146 1.21484 1.00407 0.94117 0.94389 1.21296 0.94074 0.98464 1.01821 1.19104 0.94589 0.93796 0.93674 0.91467 0.92883 0.92530 0.90045 0.90694 0.79341 0.94296 0.91412 0.91092 0.92105 0.88009 0.81955 0.77472 0.80610 0.81769 0.83279 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.77 7.60 71.98 0.55 -3.23 16 2 C 0.15 5.06 3.19 44.97 0.14 5.20 16 3 H 0.06 2.21 6.64 -2.38 -0.02 2.19 16 4 C -0.12 -3.98 5.07 30.67 0.16 -3.82 16 5 C 0.17 6.28 3.10 45.04 0.14 6.42 16 6 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 7 N -0.73 -34.72 4.31 -322.71 -1.39 -36.11 16 8 C -0.23 -12.16 9.93 84.03 0.83 -11.33 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 11 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 12 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 16 C -0.14 -4.65 5.78 30.69 0.18 -4.47 16 17 C 0.10 3.42 4.49 86.36 0.39 3.81 16 18 N -0.59 -19.74 2.97 -798.87 -2.37 -22.12 16 19 C 0.56 18.87 7.26 86.67 0.63 19.50 16 20 O -0.55 -19.76 9.90 -4.04 -0.04 -19.80 16 21 C -0.20 -5.90 5.64 -18.60 -0.10 -6.01 16 22 C 0.11 3.13 8.62 84.81 0.73 3.86 16 23 N -0.52 -13.50 10.22 -193.72 -1.98 -15.48 16 24 C 0.18 3.43 11.00 85.31 0.94 4.37 16 25 C -0.14 -2.67 5.74 -21.33 -0.12 -2.80 16 26 C -0.07 -0.86 9.82 22.33 0.22 -0.64 16 27 C -0.12 -1.38 9.94 22.06 0.22 -1.16 16 28 C -0.08 -1.38 9.96 22.11 0.22 -1.16 16 29 C -0.14 -3.38 9.27 22.20 0.21 -3.17 16 30 C -0.01 -0.17 5.90 -19.94 -0.12 -0.29 16 31 H 0.07 2.15 6.72 -2.39 -0.02 2.14 16 32 H 0.05 1.84 6.79 -2.39 -0.02 1.82 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 36 H 0.37 19.33 6.06 -92.71 -0.56 18.77 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.06 2.39 7.63 -2.39 -0.02 2.37 16 41 H 0.10 3.06 4.11 -2.39 -0.01 3.05 16 42 H 0.16 4.91 5.43 -2.91 -0.02 4.90 16 43 H 0.21 1.83 8.06 -2.91 -0.02 1.80 16 44 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 45 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 46 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 47 H 0.13 3.64 5.85 -2.91 -0.02 3.62 16 Total: -1.00 -69.32 365.51 2.64 -66.68 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.45 Total: 35.79 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.67 Total: 1.41 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.46 Total: -131.72 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.32 2.64 -66.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.247 kcal (2) G-P(sol) polarization free energy of solvation -69.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds