Wall clock time and date at job start Tue Mar 31 2020 22:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58146 * 2 1 4 4 C 1.53192 * 109.58473 * 239.72512 * 2 1 3 5 5 C 1.53038 * 109.31449 * 185.57768 * 4 2 1 6 6 H 1.09007 * 109.46014 * 301.36052 * 5 4 2 7 7 N 1.46493 * 109.46341 * 181.38389 * 5 4 2 8 8 C 1.36940 * 119.99961 * 154.97197 * 7 5 4 9 9 H 1.07996 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99815 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99954 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99890 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47139 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46918 * 240.00123 * 12 10 8 15 15 H 1.48498 * 109.47301 * 120.00031 * 12 10 8 16 16 C 1.53044 * 109.52664 * 61.36788 * 5 4 2 17 17 C 1.53193 * 109.31194 * 298.61935 * 16 5 4 18 18 N 1.46916 * 109.58695 * 120.43337 * 2 1 3 19 19 C 1.34781 * 120.63244 * 353.41892 * 18 2 1 20 20 O 1.21595 * 119.99838 * 5.93753 * 19 18 2 21 21 C 1.47444 * 120.00065 * 185.93951 * 19 18 2 22 22 C 1.38952 * 121.17082 * 29.39093 * 21 19 18 23 23 N 1.32203 * 121.31645 * 180.02562 * 22 21 19 24 24 C 1.31195 * 123.69665 * 0.02562 * 23 22 21 25 25 C 1.40383 * 120.91540 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.14176 * 180.02562 * 25 24 23 27 27 C 1.36231 * 119.48437 * 179.97438 * 26 25 24 28 28 C 1.39295 * 121.10774 * 359.97438 * 27 26 25 29 29 C 1.36437 * 120.94689 * 0.02607 * 28 27 26 30 30 C 1.39690 * 119.43669 * 359.66435 * 29 28 27 31 31 H 1.09003 * 109.47159 * 183.77931 * 1 2 3 32 32 H 1.09001 * 109.46887 * 303.77833 * 1 2 3 33 33 H 1.09001 * 109.47321 * 63.77907 * 1 2 3 34 34 H 1.08998 * 109.50102 * 65.62479 * 4 2 1 35 35 H 1.09008 * 109.49761 * 305.52445 * 4 2 1 36 36 H 0.97005 * 120.00100 * 334.96721 * 7 5 4 37 37 H 0.96997 * 120.00235 * 0.02562 * 11 10 8 38 38 H 1.08997 * 109.49987 * 58.58394 * 16 5 4 39 39 H 1.08998 * 109.49701 * 178.68420 * 16 5 4 40 40 H 1.09003 * 109.59706 * 294.86823 * 17 16 5 41 41 H 1.08999 * 109.69985 * 174.50822 * 17 16 5 42 42 H 1.08004 * 119.34390 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.54199 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.25705 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.44662 * 180.02562 * 27 26 25 46 46 H 1.07998 * 119.52579 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.28120 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7276 -1.2464 5 6 3.5674 -0.8464 -1.1714 6 1 4.0061 0.1489 -1.0989 7 7 4.0651 -1.5125 -2.3775 8 6 5.3495 -1.2944 -2.7996 9 1 5.9956 -0.6317 -2.2431 10 6 5.8212 -1.9260 -3.9422 11 7 5.0342 -2.7348 -4.6196 12 14 7.5734 -1.6291 -4.5176 13 1 8.2464 -0.6859 -3.5887 14 1 7.5539 -1.0480 -5.8841 15 1 8.3127 -2.9169 -4.5378 16 6 3.9566 -1.6660 0.0611 17 6 3.4650 -0.9488 1.3223 18 7 2.0225 -0.7011 1.1934 19 6 1.1673 -1.1099 2.1516 20 8 -0.0318 -0.9969 1.9848 21 6 1.6858 -1.6940 3.4022 22 6 2.9245 -1.3221 3.9103 23 7 3.3924 -1.8444 5.0311 24 6 2.7463 -2.7366 5.7436 25 6 1.4830 -3.2010 5.3446 26 6 0.7689 -4.1546 6.0875 27 6 -0.4537 -4.5668 5.6502 28 6 -1.0080 -4.0578 4.4781 29 6 -0.3415 -3.1301 3.7320 30 6 0.9116 -2.6805 4.1549 31 1 -0.3633 -1.0254 0.0677 32 1 -0.3633 0.5714 0.8542 33 1 -0.3634 0.4541 -0.9219 34 1 1.7660 -0.1639 -2.1371 35 1 1.6029 -1.7236 -1.2937 36 1 3.4849 -2.1080 -2.8772 37 1 4.1245 -2.8892 -4.3206 38 1 3.4979 -2.6529 0.0014 39 1 5.0409 -1.7700 0.1012 40 1 3.9903 0.0001 1.4315 41 1 3.6521 -1.5727 2.1963 42 1 3.5169 -0.5918 3.3791 43 1 3.1925 -3.1191 6.6497 44 1 1.1856 -4.5581 6.9985 45 1 -1.0027 -5.3001 6.2224 46 1 -1.9794 -4.4023 4.1554 47 1 -0.7813 -2.7430 2.8247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044873122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:18 Heat of formation + Delta-G solvation = 63.752195 kcal Electronic energy + Delta-G solvation = -29515.868808 eV Core-core repulsion = 25664.865539 eV Total energy + Delta-G solvation = -3851.003269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.37654 -40.04579 -37.73038 -37.46272 -34.82633 -33.82146 -32.24347 -32.08085 -31.47138 -29.87911 -29.05159 -27.13109 -25.27342 -24.22885 -23.87668 -23.17967 -22.93413 -21.64891 -20.40271 -19.33470 -18.54345 -17.69005 -17.34263 -16.92093 -16.26756 -15.90647 -15.56710 -15.06035 -14.85340 -14.69234 -14.40855 -14.07364 -14.02984 -13.86257 -13.64382 -13.46095 -13.25805 -13.02843 -12.75739 -12.49868 -12.29570 -12.16097 -12.00072 -11.58264 -11.56957 -11.38241 -10.89796 -10.85714 -10.58204 -10.46981 -10.31974 -10.10405 -10.06263 -9.94611 -9.37537 -9.23319 -9.01726 -8.93788 -8.56403 -8.33296 -7.07735 -6.13231 -3.13793 -0.17883 0.58958 1.40180 2.56880 2.77472 2.98873 3.49634 3.56155 3.65268 3.77560 3.98270 4.20386 4.27628 4.40678 4.54686 4.61717 4.63157 4.84414 4.90330 4.94676 5.04057 5.14208 5.17911 5.25359 5.33490 5.38149 5.44504 5.46910 5.59681 5.65719 5.69131 5.76334 5.80741 5.90918 6.01785 6.05775 6.10284 6.14958 6.23678 6.27002 6.32255 6.35888 6.41760 6.52478 6.64546 6.78352 6.92708 7.37186 7.59671 7.78051 8.08887 8.72481 9.18898 10.05399 10.20353 11.35141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002823 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.337395 B = 9914.740634 C =10569.951926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.050 0.950 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.066 0.934 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.084 2.916 13 H -0.294 1.294 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.149 4.149 17 C 0.084 3.916 18 N -0.593 5.593 19 C 0.566 3.434 20 O -0.531 6.531 21 C -0.170 4.170 22 C 0.108 3.892 23 N -0.495 5.495 24 C 0.171 3.829 25 C -0.121 4.121 26 C -0.088 4.088 27 C -0.120 4.120 28 C -0.097 4.097 29 C -0.104 4.104 30 C 0.013 3.987 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.367 0.633 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.173 0.827 43 H 0.166 0.834 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 0.130 22.971 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.068 0.932 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.084 0.916 10 C -0.243 4.243 11 N -0.589 5.589 12 Si 0.916 3.084 13 H -0.221 1.221 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.190 4.190 17 C -0.038 4.038 18 N -0.325 5.325 19 C 0.354 3.646 20 O -0.410 6.410 21 C -0.175 4.175 22 C -0.036 4.036 23 N -0.202 5.202 24 C -0.001 4.001 25 C -0.123 4.123 26 C -0.108 4.108 27 C -0.138 4.138 28 C -0.116 4.116 29 C -0.122 4.122 30 C 0.007 3.993 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.189 0.811 43 H 0.183 0.817 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.818 0.365 21.917 23.627 hybrid contribution -1.898 -0.183 0.757 2.051 sum -10.715 0.182 22.674 25.080 Atomic orbital electron populations 1.22216 0.92639 1.03753 1.00580 1.21353 0.95588 0.95011 0.83485 0.90770 1.22321 0.97602 1.00945 0.96650 1.20106 0.90731 0.95013 0.86753 0.93239 1.42447 1.13089 1.54873 1.27264 1.20089 0.89576 1.26416 1.10190 0.91645 1.25770 1.06268 0.97566 0.94653 1.70812 1.08205 1.38409 1.41511 0.83164 0.74198 0.75536 0.75546 1.22086 1.22012 1.22024 1.22660 1.01900 0.99896 0.94586 1.22561 0.79500 1.01014 1.00762 1.48092 1.07665 1.56635 1.20093 1.17837 0.86071 0.78061 0.82584 1.90782 1.14953 1.55896 1.79402 1.22012 0.96692 1.01077 0.97715 1.23329 0.91652 0.97306 0.91273 1.67186 1.36039 1.10407 1.06605 1.23300 0.89443 0.90067 0.97244 1.18998 0.97044 0.99976 0.96321 1.20966 0.94746 0.95860 0.99198 1.20977 0.95886 1.00151 0.96761 1.21140 1.00083 0.95880 0.94510 1.21388 0.93408 0.96200 1.01176 1.18868 0.94137 0.93629 0.92643 0.91014 0.91332 0.93729 0.90568 0.91870 0.80035 0.93295 0.92342 0.90383 0.90771 0.88964 0.81054 0.81688 0.84706 0.85445 0.85339 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 7.59 37.16 0.28 -1.58 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.18 3.52 2.73 -67.89 -0.19 3.34 16 6 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 7 N -0.74 -17.98 5.12 -53.39 -0.27 -18.25 16 8 C -0.33 -9.11 9.93 -15.06 -0.15 -9.26 16 9 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 10 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 11 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 12 Si 1.08 25.79 29.92 -169.99 -5.09 20.71 16 13 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C -0.15 -2.54 5.66 -26.61 -0.15 -2.69 16 17 C 0.08 1.12 4.74 -3.71 -0.02 1.10 16 18 N -0.59 -8.25 2.97 -166.48 -0.49 -8.75 16 19 C 0.57 8.16 7.25 -12.51 -0.09 8.07 16 20 O -0.53 -8.35 9.88 5.28 0.05 -8.30 16 21 C -0.17 -2.24 5.64 -102.66 -0.58 -2.82 16 22 C 0.11 1.29 8.62 -17.13 -0.15 1.14 16 23 N -0.50 -5.77 10.22 -12.58 -0.13 -5.90 16 24 C 0.17 1.63 11.00 -17.02 -0.19 1.45 16 25 C -0.12 -1.25 5.74 -106.89 -0.61 -1.86 16 26 C -0.09 -0.68 9.82 -39.49 -0.39 -1.07 16 27 C -0.12 -0.91 9.94 -39.91 -0.40 -1.31 16 28 C -0.10 -0.89 9.96 -39.84 -0.40 -1.28 16 29 C -0.10 -1.24 9.27 -39.69 -0.37 -1.60 16 30 C 0.01 0.16 5.90 -104.74 -0.62 -0.46 16 31 H 0.07 1.09 6.71 -51.93 -0.35 0.75 16 32 H 0.07 0.98 6.78 -51.93 -0.35 0.63 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.37 9.39 6.63 -40.82 -0.27 9.12 16 37 H 0.26 7.77 6.77 -40.82 -0.28 7.49 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 41 H 0.09 1.14 4.11 -51.93 -0.21 0.92 16 42 H 0.17 1.82 5.43 -52.48 -0.28 1.54 16 43 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.15 1.98 5.85 -52.49 -0.31 1.67 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -33.06 368.05 -10.41 -43.47 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.32 Total: 10.49 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -4.47 Total: -10.72 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.14 Total: -61.19 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.05 Total: -8.30 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.71 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.06 -10.41 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.225 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds