Wall clock time and date at job start Tue Mar 31 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58146 * 2 1 4 4 C 1.53192 * 109.58473 * 239.72512 * 2 1 3 5 5 C 1.53038 * 109.31449 * 185.57768 * 4 2 1 6 6 H 1.09007 * 109.46014 * 301.36052 * 5 4 2 7 7 N 1.46493 * 109.46341 * 181.38389 * 5 4 2 8 8 C 1.36940 * 119.99961 * 154.97197 * 7 5 4 9 9 H 1.07996 * 120.00044 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99815 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99954 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99890 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47139 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.46918 * 240.00123 * 12 10 8 15 15 H 1.48498 * 109.47301 * 120.00031 * 12 10 8 16 16 C 1.53044 * 109.52664 * 61.36788 * 5 4 2 17 17 C 1.53193 * 109.31194 * 298.61935 * 16 5 4 18 18 N 1.46916 * 109.58695 * 120.43337 * 2 1 3 19 19 C 1.34781 * 120.63244 * 353.41892 * 18 2 1 20 20 O 1.21595 * 119.99838 * 5.93753 * 19 18 2 21 21 C 1.47444 * 120.00065 * 185.93951 * 19 18 2 22 22 C 1.38952 * 121.17082 * 29.39093 * 21 19 18 23 23 N 1.32203 * 121.31645 * 180.02562 * 22 21 19 24 24 C 1.31195 * 123.69665 * 0.02562 * 23 22 21 25 25 C 1.40383 * 120.91540 * 359.97438 * 24 23 22 26 26 C 1.40393 * 122.14176 * 180.02562 * 25 24 23 27 27 C 1.36231 * 119.48437 * 179.97438 * 26 25 24 28 28 C 1.39295 * 121.10774 * 359.97438 * 27 26 25 29 29 C 1.36437 * 120.94689 * 0.02607 * 28 27 26 30 30 C 1.39690 * 119.43669 * 359.66435 * 29 28 27 31 31 H 1.09003 * 109.47159 * 183.77931 * 1 2 3 32 32 H 1.09001 * 109.46887 * 303.77833 * 1 2 3 33 33 H 1.09001 * 109.47321 * 63.77907 * 1 2 3 34 34 H 1.08998 * 109.50102 * 65.62479 * 4 2 1 35 35 H 1.09008 * 109.49761 * 305.52445 * 4 2 1 36 36 H 0.97005 * 120.00100 * 334.96721 * 7 5 4 37 37 H 0.96997 * 120.00235 * 0.02562 * 11 10 8 38 38 H 1.08997 * 109.49987 * 58.58394 * 16 5 4 39 39 H 1.08998 * 109.49701 * 178.68420 * 16 5 4 40 40 H 1.09003 * 109.59706 * 294.86823 * 17 16 5 41 41 H 1.08999 * 109.69985 * 174.50822 * 17 16 5 42 42 H 1.08004 * 119.34390 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.54199 * 179.97438 * 24 23 22 44 44 H 1.07996 * 120.25705 * 359.97438 * 26 25 24 45 45 H 1.07998 * 119.44662 * 180.02562 * 27 26 25 46 46 H 1.07998 * 119.52579 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.28120 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7276 -1.2464 5 6 3.5674 -0.8464 -1.1714 6 1 4.0061 0.1489 -1.0989 7 7 4.0651 -1.5125 -2.3775 8 6 5.3495 -1.2944 -2.7996 9 1 5.9956 -0.6317 -2.2431 10 6 5.8212 -1.9260 -3.9422 11 7 5.0342 -2.7348 -4.6196 12 14 7.5734 -1.6291 -4.5176 13 1 8.2464 -0.6859 -3.5887 14 1 7.5539 -1.0480 -5.8841 15 1 8.3127 -2.9169 -4.5378 16 6 3.9566 -1.6660 0.0611 17 6 3.4650 -0.9488 1.3223 18 7 2.0225 -0.7011 1.1934 19 6 1.1673 -1.1099 2.1516 20 8 -0.0318 -0.9969 1.9848 21 6 1.6858 -1.6940 3.4022 22 6 2.9245 -1.3221 3.9103 23 7 3.3924 -1.8444 5.0311 24 6 2.7463 -2.7366 5.7436 25 6 1.4830 -3.2010 5.3446 26 6 0.7689 -4.1546 6.0875 27 6 -0.4537 -4.5668 5.6502 28 6 -1.0080 -4.0578 4.4781 29 6 -0.3415 -3.1301 3.7320 30 6 0.9116 -2.6805 4.1549 31 1 -0.3633 -1.0254 0.0677 32 1 -0.3633 0.5714 0.8542 33 1 -0.3634 0.4541 -0.9219 34 1 1.7660 -0.1639 -2.1371 35 1 1.6029 -1.7236 -1.2937 36 1 3.4849 -2.1080 -2.8772 37 1 4.1245 -2.8892 -4.3206 38 1 3.4979 -2.6529 0.0014 39 1 5.0409 -1.7700 0.1012 40 1 3.9903 0.0001 1.4315 41 1 3.6521 -1.5727 2.1963 42 1 3.5169 -0.5918 3.3791 43 1 3.1925 -3.1191 6.6497 44 1 1.1856 -4.5581 6.9985 45 1 -1.0027 -5.3001 6.2224 46 1 -1.9794 -4.4023 4.1554 47 1 -0.7813 -2.7430 2.8247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044873122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:17 Heat of formation + Delta-G solvation = 43.883685 kcal Electronic energy + Delta-G solvation = -29516.730371 eV Core-core repulsion = 25664.865539 eV Total energy + Delta-G solvation = -3851.864832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.31335 -41.03143 -38.87830 -38.41811 -36.51249 -34.87489 -33.88833 -33.11992 -32.21882 -31.05000 -30.42318 -28.50662 -26.27730 -25.69833 -25.09939 -24.24679 -24.02332 -22.76855 -21.81444 -20.48821 -19.37249 -19.35375 -18.48536 -17.88336 -17.22878 -17.04398 -16.72760 -16.43703 -16.08677 -15.77258 -15.66799 -15.41644 -15.07675 -14.98327 -14.83649 -14.75763 -14.43089 -14.04981 -13.89717 -13.52084 -13.30150 -13.26512 -13.09278 -12.89443 -12.76853 -12.66898 -12.39905 -12.19705 -12.14637 -12.00518 -11.85255 -11.68271 -11.22256 -11.12679 -10.92107 -10.79271 -10.11626 -10.08578 -9.73718 -9.18802 -9.09180 -8.38965 -5.33528 -0.96465 -0.17373 0.62943 1.58263 1.59539 1.69611 1.77940 1.80850 2.09868 2.70633 2.99374 3.13944 3.38580 3.39978 3.48826 3.55465 3.67816 3.70751 3.80288 3.85859 3.91360 3.98931 4.09054 4.19771 4.23856 4.28292 4.39767 4.45959 4.49323 4.55187 4.56991 4.60034 4.72452 4.76015 4.85780 4.91039 4.99904 5.05055 5.05368 5.14709 5.29624 5.36259 5.37450 5.45557 5.50048 5.58153 5.60956 5.85229 6.25411 6.48493 6.79250 6.99738 7.07887 7.97618 8.10801 9.12838 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002823 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.337395 B = 9914.740634 C =10569.951926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.153 3.847 3 H 0.093 0.907 4 C -0.124 4.124 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.750 5.750 8 C -0.323 4.323 9 H 0.071 0.929 10 C -0.108 4.108 11 N -0.979 5.979 12 Si 1.131 2.869 13 H -0.268 1.268 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.138 4.138 17 C 0.096 3.904 18 N -0.596 5.596 19 C 0.564 3.436 20 O -0.551 6.551 21 C -0.202 4.202 22 C 0.112 3.888 23 N -0.519 5.519 24 C 0.186 3.814 25 C -0.138 4.138 26 C -0.073 4.073 27 C -0.124 4.124 28 C -0.087 4.087 29 C -0.142 4.142 30 C -0.008 4.008 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.356 0.644 37 H 0.243 0.757 38 H 0.037 0.963 39 H 0.066 0.934 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.181 0.819 43 H 0.209 0.791 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.146 0.854 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 0.028 26.429 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 H 0.111 0.889 4 C -0.163 4.163 5 C 0.071 3.929 6 H 0.070 0.930 7 N -0.391 5.391 8 C -0.455 4.455 9 H 0.089 0.911 10 C -0.299 4.299 11 N -0.628 5.628 12 Si 0.956 3.044 13 H -0.193 1.193 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.179 4.179 17 C -0.027 4.027 18 N -0.327 5.327 19 C 0.354 3.646 20 O -0.432 6.432 21 C -0.207 4.207 22 C -0.031 4.031 23 N -0.226 5.226 24 C 0.015 3.985 25 C -0.140 4.140 26 C -0.092 4.092 27 C -0.142 4.142 28 C -0.106 4.106 29 C -0.160 4.160 30 C -0.014 4.014 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.188 0.812 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.197 0.803 43 H 0.225 0.775 44 H 0.195 0.805 45 H 0.181 0.819 46 H 0.164 0.836 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.183 0.292 25.434 26.719 hybrid contribution -2.224 -0.231 -0.149 2.241 sum -10.407 0.061 25.285 27.343 Atomic orbital electron populations 1.22058 0.92317 1.02563 1.01041 1.21323 0.95747 0.95467 0.82490 0.88933 1.22168 0.95652 1.00431 0.98028 1.20346 0.92238 0.94710 0.85599 0.93028 1.42692 1.12310 1.55169 1.28917 1.20426 0.90591 1.24962 1.09495 0.91110 1.27183 1.09493 0.97683 0.95526 1.70931 1.08117 1.40838 1.42881 0.82570 0.70336 0.75871 0.75590 1.19253 1.22010 1.22065 1.22434 1.01001 0.98941 0.95535 1.22538 0.79217 1.02004 0.98906 1.48101 1.07868 1.56771 1.20000 1.18116 0.85827 0.77550 0.83102 1.90766 1.15813 1.56552 1.80028 1.21930 0.97914 1.02984 0.97848 1.23436 0.91072 0.97055 0.91511 1.67280 1.36607 1.11817 1.06935 1.24027 0.88749 0.88159 0.97538 1.19312 0.97777 1.00932 0.95984 1.21478 0.94181 0.93889 0.99662 1.21394 0.96198 1.00453 0.96139 1.21475 1.00421 0.94201 0.94512 1.21287 0.94409 0.98677 1.01664 1.19129 0.94473 0.93986 0.93773 0.92961 0.91620 0.92460 0.90807 0.93446 0.81243 0.94676 0.94366 0.91511 0.88286 0.87637 0.80268 0.77499 0.80539 0.81917 0.83602 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.45 7.59 71.98 0.55 -2.91 16 2 C 0.15 4.32 3.49 44.98 0.16 4.47 16 3 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -4.17 4.84 30.67 0.15 -4.02 16 5 C 0.18 6.94 2.73 45.02 0.12 7.06 16 6 H 0.05 1.99 8.08 -2.38 -0.02 1.97 16 7 N -0.75 -37.65 5.12 -322.81 -1.65 -39.30 16 8 C -0.32 -17.90 9.93 84.03 0.83 -17.06 16 9 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 10 C -0.11 -6.27 5.50 84.86 0.47 -5.80 16 11 N -0.98 -61.93 13.70 21.65 0.30 -61.63 16 12 Si 1.13 52.02 29.92 68.60 2.05 54.07 16 13 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 15 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 16 C -0.14 -4.76 5.66 30.67 0.17 -4.59 16 17 C 0.10 2.47 4.74 86.36 0.41 2.88 16 18 N -0.60 -16.65 2.97 -798.87 -2.37 -19.03 16 19 C 0.56 16.77 7.25 86.67 0.63 17.40 16 20 O -0.55 -18.26 9.88 -4.01 -0.04 -18.30 16 21 C -0.20 -5.37 5.64 -18.59 -0.10 -5.48 16 22 C 0.11 2.60 8.62 84.81 0.73 3.33 16 23 N -0.52 -11.08 10.22 -193.72 -1.98 -13.05 16 24 C 0.19 2.98 11.00 85.31 0.94 3.92 16 25 C -0.14 -2.51 5.74 -21.33 -0.12 -2.64 16 26 C -0.07 -0.83 9.82 22.33 0.22 -0.61 16 27 C -0.12 -1.46 9.94 22.06 0.22 -1.24 16 28 C -0.09 -1.48 9.96 22.10 0.22 -1.26 16 29 C -0.14 -3.49 9.27 22.20 0.21 -3.28 16 30 C -0.01 -0.21 5.90 -19.94 -0.12 -0.33 16 31 H 0.05 1.67 6.71 -2.39 -0.02 1.66 16 32 H 0.06 1.90 6.78 -2.39 -0.02 1.88 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.36 19.11 6.63 -92.70 -0.61 18.50 16 37 H 0.24 15.39 6.77 -92.71 -0.63 14.76 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.10 2.11 8.04 -2.39 -0.02 2.09 16 41 H 0.11 2.53 4.11 -2.39 -0.01 2.52 16 42 H 0.18 3.60 5.43 -2.91 -0.02 3.58 16 43 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 44 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 45 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 46 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.13 3.61 5.85 -2.91 -0.02 3.60 16 Total: -1.00 -75.11 368.05 2.51 -72.59 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.53 Total: 34.79 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.68 Total: -10.15 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -5.71 Total: -133.02 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.04 Total: -18.30 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -75.11 2.51 -72.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.479 kcal (2) G-P(sol) polarization free energy of solvation -75.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds