Wall clock time and date at job start Tue Mar 31 2020 22:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.69808 * 2 1 4 4 C 1.53192 * 109.58474 * 120.35614 * 2 1 3 5 5 C 1.53042 * 109.30973 * 174.41906 * 4 2 1 6 6 H 1.09004 * 109.45594 * 58.64941 * 5 4 2 7 7 N 1.46503 * 109.45953 * 178.61137 * 5 4 2 8 8 C 1.36937 * 120.00341 * 205.00397 * 7 5 4 9 9 H 1.07998 * 119.99782 * 0.02562 * 8 7 5 10 10 C 1.38810 * 120.00115 * 180.02562 * 8 7 5 11 11 N 1.31623 * 119.99861 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99941 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47359 * 59.99316 * 12 10 8 14 14 H 1.48497 * 109.46966 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.46916 * 299.99325 * 12 10 8 16 16 C 1.53031 * 109.54138 * 298.63730 * 5 4 2 17 17 C 1.52757 * 109.38402 * 61.23985 * 16 5 4 18 18 N 1.46923 * 109.58433 * 239.64475 * 2 1 3 19 19 C 1.34778 * 120.63374 * 6.58435 * 18 2 1 20 20 O 1.21596 * 119.99800 * 4.88465 * 19 18 2 21 21 C 1.47447 * 119.99817 * 184.89108 * 19 18 2 22 22 C 1.38946 * 121.17196 * 324.52816 * 21 19 18 23 23 N 1.32201 * 121.31312 * 180.02562 * 22 21 19 24 24 C 1.31192 * 123.70365 * 0.02562 * 23 22 21 25 25 C 1.40391 * 120.91327 * 0.02562 * 24 23 22 26 26 C 1.40391 * 122.14957 * 179.97438 * 25 24 23 27 27 C 1.36237 * 119.48438 * 180.27766 * 26 25 24 28 28 C 1.39301 * 121.10289 * 359.40370 * 27 26 25 29 29 C 1.36430 * 120.94857 * 0.64964 * 28 27 26 30 30 C 1.39697 * 119.43633 * 359.66162 * 29 28 27 31 31 H 1.09006 * 109.46638 * 173.09424 * 1 2 3 32 32 H 1.08994 * 109.47399 * 293.09410 * 1 2 3 33 33 H 1.08995 * 109.47093 * 53.09973 * 1 2 3 34 34 H 1.08998 * 109.50339 * 294.37450 * 4 2 1 35 35 H 1.09001 * 109.49742 * 54.43973 * 4 2 1 36 36 H 0.97007 * 119.99862 * 25.00663 * 7 5 4 37 37 H 0.97003 * 119.99730 * 180.02562 * 11 10 8 38 38 H 1.09008 * 109.49866 * 181.31874 * 16 5 4 39 39 H 1.08999 * 109.49756 * 301.40874 * 16 5 4 40 40 H 1.09006 * 109.51115 * 185.70860 * 17 16 5 41 41 H 1.09004 * 109.43574 * 65.42728 * 17 16 5 42 42 H 1.08001 * 119.34587 * 0.02562 * 22 21 19 43 43 H 1.07993 * 119.54714 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.25983 * 0.02562 * 26 25 24 45 45 H 1.07995 * 119.44614 * 179.72746 * 27 26 25 46 46 H 1.08003 * 119.52213 * 180.28913 * 28 27 26 47 47 H 1.07996 * 120.28283 * 179.64011 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8481 1.1701 6 1 4.0061 0.1473 1.0991 7 7 4.0652 -1.5158 2.3754 8 6 5.3497 -1.2988 2.7975 9 1 5.9957 -0.6350 2.2421 10 6 5.8214 -1.9319 3.9392 11 7 5.0339 -2.7404 4.6163 12 14 7.5734 -1.6353 4.5153 13 1 7.7624 -0.1906 4.8021 14 1 7.8287 -2.4219 5.7487 15 1 8.5218 -2.0573 3.4534 16 6 3.9569 -1.6657 -0.0635 17 6 3.4644 -0.9519 -1.3210 18 7 2.0225 -0.6995 -1.1945 19 6 1.1673 -1.1069 -2.1532 20 8 -0.0117 -0.8193 -2.0783 21 6 1.6615 -1.9015 -3.2927 22 6 2.9185 -1.6718 -3.8384 23 7 3.3642 -2.3821 -4.8603 24 6 2.6775 -3.3409 -5.4350 25 6 1.3912 -3.6769 -4.9840 26 6 0.6335 -4.6975 -5.5799 27 6 -0.6118 -4.9745 -5.1017 28 6 -1.1416 -4.2700 -4.0231 29 6 -0.4331 -3.2716 -3.4211 30 6 0.8447 -2.9574 -3.8902 31 1 -0.3633 -1.0203 -0.1236 32 1 -0.3634 0.4031 0.9452 33 1 -0.3633 0.6170 -0.8218 34 1 1.7660 -0.1669 2.1369 35 1 1.6025 -1.7251 1.2916 36 1 3.4848 -2.1117 2.8744 37 1 5.3634 -3.1825 5.4144 38 1 5.0413 -1.7696 -0.1037 39 1 3.4983 -2.6528 -0.0053 40 1 3.6503 -1.5798 -2.1925 41 1 3.9929 -0.0049 -1.4310 42 1 3.5440 -0.8975 -3.4192 43 1 3.1077 -3.8793 -6.2666 44 1 1.0329 -5.2560 -6.4134 45 1 -1.1959 -5.7568 -5.5634 46 1 -2.1298 -4.5140 -3.6618 47 1 -0.8566 -2.7285 -2.5892 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044873123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:21 Heat of formation + Delta-G solvation = 47.276656 kcal Electronic energy + Delta-G solvation = -29532.687381 eV Core-core repulsion = 25680.969680 eV Total energy + Delta-G solvation = -3851.717702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28313 -40.98380 -38.79141 -38.39428 -36.23021 -34.82525 -33.76939 -33.09816 -32.20455 -31.17147 -30.48359 -28.53308 -26.31962 -25.77776 -25.05591 -24.15692 -23.97557 -22.68018 -21.64753 -20.42891 -19.40695 -19.13473 -18.48280 -17.85659 -17.14623 -16.94893 -16.68481 -16.55106 -15.91261 -15.60191 -15.52187 -15.43096 -15.02924 -14.89034 -14.78648 -14.59460 -14.42483 -14.05643 -13.88478 -13.42329 -13.28335 -13.17448 -13.09277 -12.88215 -12.82112 -12.65929 -12.49585 -12.23314 -12.19535 -12.05690 -11.94131 -11.69496 -11.42139 -11.11887 -10.89649 -10.74189 -10.09432 -10.08923 -9.68508 -9.13158 -9.00162 -7.93727 -5.22875 -0.92130 -0.15579 0.65939 1.47789 1.50452 1.56316 1.59398 1.83572 2.11569 2.56306 3.00814 3.18899 3.39322 3.39830 3.51634 3.68727 3.70907 3.77996 3.86659 3.88067 3.99846 4.06432 4.18319 4.25948 4.28653 4.29844 4.46338 4.49572 4.56574 4.60655 4.66185 4.70645 4.74340 4.81224 4.94705 5.01097 5.01492 5.06197 5.11467 5.22236 5.36173 5.39160 5.45082 5.47510 5.51525 5.52320 5.63478 5.86758 6.27184 6.30783 6.81874 7.03640 7.33542 8.08470 8.31936 9.29751 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014699 B = 0.002894 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.432706 B = 9672.392479 C =10313.373143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.152 3.848 3 H 0.092 0.908 4 C -0.123 4.123 5 C 0.174 3.826 6 H 0.053 0.947 7 N -0.737 5.737 8 C -0.237 4.237 9 H 0.080 0.920 10 C -0.078 4.078 11 N -0.972 5.972 12 Si 0.972 3.028 13 H -0.277 1.277 14 H -0.299 1.299 15 H -0.277 1.277 16 C -0.139 4.139 17 C 0.085 3.915 18 N -0.594 5.594 19 C 0.565 3.435 20 O -0.552 6.552 21 C -0.198 4.198 22 C 0.106 3.894 23 N -0.517 5.517 24 C 0.183 3.817 25 C -0.137 4.137 26 C -0.073 4.073 27 C -0.124 4.124 28 C -0.087 4.087 29 C -0.141 4.141 30 C -0.010 4.010 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.068 0.932 39 H 0.038 0.962 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.186 0.814 43 H 0.208 0.792 44 H 0.177 0.823 45 H 0.163 0.837 46 H 0.147 0.853 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -1.660 -24.729 26.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.049 3.951 3 H 0.110 0.890 4 C -0.162 4.162 5 C 0.066 3.934 6 H 0.071 0.929 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.098 0.902 10 C -0.270 4.270 11 N -0.623 5.623 12 Si 0.801 3.199 13 H -0.203 1.203 14 H -0.226 1.226 15 H -0.203 1.203 16 C -0.180 4.180 17 C -0.037 4.037 18 N -0.325 5.325 19 C 0.354 3.646 20 O -0.432 6.432 21 C -0.203 4.203 22 C -0.037 4.037 23 N -0.225 5.225 24 C 0.012 3.988 25 C -0.139 4.139 26 C -0.093 4.093 27 C -0.142 4.142 28 C -0.106 4.106 29 C -0.159 4.159 30 C -0.015 4.015 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.201 0.799 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.130 0.870 41 H 0.117 0.883 42 H 0.202 0.798 43 H 0.224 0.776 44 H 0.194 0.806 45 H 0.181 0.819 46 H 0.165 0.835 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.787 -1.086 -24.836 26.717 hybrid contribution -0.110 -0.394 1.752 1.799 sum -9.897 -1.480 -23.084 25.159 Atomic orbital electron populations 1.22041 0.92495 1.02375 1.01210 1.21327 0.95629 0.95603 0.82519 0.89023 1.22154 0.95848 1.00394 0.97793 1.20409 0.92249 0.94832 0.85929 0.92860 1.42646 1.12159 1.54568 1.28260 1.19606 0.90063 1.21117 1.06061 0.90219 1.25562 1.02067 1.00426 0.98905 1.69825 1.37266 1.35226 1.20006 0.85236 0.80173 0.77453 0.77072 1.20312 1.22571 1.20284 1.22367 1.01085 0.99012 0.95501 1.22654 0.79198 1.02318 0.99560 1.48138 1.07947 1.56608 1.19838 1.18081 0.85450 0.78930 0.82142 1.90775 1.17221 1.57630 1.77618 1.21955 0.97428 1.00800 1.00086 1.23451 0.91387 0.97800 0.91069 1.67266 1.37281 1.07996 1.09951 1.24000 0.88541 0.90155 0.96092 1.19303 0.97632 0.99591 0.97349 1.21477 0.93811 0.94538 0.99436 1.21392 0.96308 1.00342 0.96112 1.21464 1.00568 0.93438 0.95134 1.21194 0.93923 0.99147 1.01596 1.19113 0.94319 0.93580 0.94473 0.93549 0.92342 0.91191 0.90683 0.93449 0.79909 0.94171 0.91339 0.94360 0.86999 0.88276 0.79792 0.77582 0.80578 0.81911 0.83544 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 7.61 71.98 0.55 -2.95 16 2 C 0.15 4.30 3.49 44.98 0.16 4.46 16 3 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.12 -4.12 4.84 30.67 0.15 -3.97 16 5 C 0.17 6.64 2.73 45.02 0.12 6.77 16 6 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 7 N -0.74 -36.81 5.12 -322.82 -1.65 -38.46 16 8 C -0.24 -12.88 9.93 84.03 0.83 -12.04 16 9 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 10 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 11 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 12 Si 0.97 45.79 29.55 68.60 2.03 47.81 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C -0.14 -4.70 5.64 30.52 0.17 -4.53 16 17 C 0.08 2.17 5.05 86.22 0.44 2.61 16 18 N -0.59 -16.62 2.98 -799.67 -2.38 -19.00 16 19 C 0.56 16.84 7.05 86.67 0.61 17.45 16 20 O -0.55 -18.34 10.34 -4.02 -0.04 -18.38 16 21 C -0.20 -5.33 5.68 -18.60 -0.11 -5.44 16 22 C 0.11 2.48 8.66 84.81 0.73 3.21 16 23 N -0.52 -11.27 10.22 -194.08 -1.98 -13.25 16 24 C 0.18 3.04 11.00 85.31 0.94 3.98 16 25 C -0.14 -2.56 5.74 -21.33 -0.12 -2.68 16 26 C -0.07 -0.87 9.82 22.33 0.22 -0.65 16 27 C -0.12 -1.50 9.94 22.06 0.22 -1.28 16 28 C -0.09 -1.51 9.96 22.10 0.22 -1.29 16 29 C -0.14 -3.48 9.27 22.20 0.21 -3.27 16 30 C -0.01 -0.25 5.90 -19.94 -0.12 -0.36 16 31 H 0.05 1.47 6.82 -2.38 -0.02 1.45 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 2.04 6.67 -2.39 -0.02 2.02 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.37 20.25 7.80 -92.70 -0.72 19.53 16 37 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.11 2.64 3.49 -2.62 -0.01 2.63 16 41 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.19 3.69 5.46 -2.91 -0.02 3.68 16 43 H 0.21 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 45 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 46 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.12 3.52 6.07 -2.91 -0.02 3.50 16 Total: -1.00 -72.60 370.14 2.22 -70.38 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: 0.28 Total: 34.38 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 5.69 Total: -3.97 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -5.74 Total: -130.22 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.04 Total: -18.38 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.60 2.22 -70.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044873123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.656 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds