Wall clock time and date at job start Tue Mar 31 2020 22:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.47014 * 180.02562 * 8 6 5 10 10 C 1.36214 * 120.66616 * 264.71182 * 9 8 6 11 11 N 1.32573 * 121.87357 * 179.74678 * 10 9 8 12 12 C 1.31267 * 122.77743 * 0.56101 * 11 10 9 13 13 C 1.40386 * 119.88228 * 359.71974 * 12 11 10 14 14 C 1.40388 * 122.08055 * 180.02562 * 13 12 11 15 15 C 1.36163 * 119.51700 * 180.02562 * 14 13 12 16 16 C 1.39387 * 121.08756 * 359.95550 * 15 14 13 17 17 C 1.36207 * 121.02645 * 0.02562 * 16 15 14 18 18 C 1.40241 * 119.48027 * 359.97438 * 17 16 15 19 19 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 5 4 21 21 H 1.08998 * 110.86741 * 219.36876 * 20 19 5 22 22 N 1.46503 * 110.71839 * 96.17284 * 20 19 5 23 23 C 1.36931 * 120.00202 * 91.47458 * 22 20 19 24 24 H 1.08004 * 119.99589 * 0.02562 * 23 22 20 25 25 C 1.38809 * 120.00349 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99947 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00285 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47083 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.46956 * 120.00247 * 27 25 23 30 30 H 1.48497 * 109.47499 * 240.00407 * 27 25 23 31 31 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 32 32 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 33 33 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 34 34 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 35 35 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 36 36 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 37 37 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 38 38 H 1.08001 * 119.06145 * 0.02562 * 10 9 8 39 39 H 1.08007 * 120.05779 * 179.70239 * 12 11 10 40 40 H 1.08003 * 120.24064 * 0.04178 * 14 13 12 41 41 H 1.07998 * 119.46102 * 179.97438 * 15 14 13 42 42 H 1.08006 * 119.48691 * 180.02562 * 16 15 14 43 43 H 1.08001 * 120.26345 * 179.97438 * 17 16 15 44 44 H 1.08993 * 109.88066 * 239.51797 * 19 5 4 45 45 H 1.09003 * 109.87770 * 118.35455 * 19 5 4 46 46 H 0.96996 * 119.99702 * 271.47318 * 22 20 19 47 47 H 0.96993 * 120.00128 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 6 6.7374 -2.2840 -2.1362 10 6 6.9025 -3.5559 -2.5950 11 7 7.7402 -3.8408 -3.5822 12 6 8.4733 -2.9291 -4.1776 13 6 8.3825 -1.5869 -3.7761 14 6 9.1442 -0.5746 -4.3809 15 6 9.0151 0.7105 -3.9497 16 6 8.1378 1.0386 -2.9175 17 6 7.3826 0.0831 -2.3076 18 6 7.4891 -1.2514 -2.7253 19 6 3.4678 -1.2731 0.6969 20 6 2.0861 -0.8075 1.2025 21 1 2.1886 -0.1701 2.0808 22 7 1.2272 -1.9574 1.4964 23 6 1.2060 -2.4917 2.7570 24 1 1.8222 -2.0651 3.5347 25 6 0.3919 -3.5809 3.0356 26 7 -0.3594 -4.1005 2.0879 27 14 0.3635 -4.3103 4.7551 28 1 1.2914 -3.5503 5.6305 29 1 -1.0136 -4.2284 5.3048 30 1 0.7896 -5.7316 4.6970 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5248 -0.8836 33 1 -0.3633 -1.0275 -0.0125 34 1 1.4531 -1.6706 -1.4022 35 1 2.1567 -0.1721 -2.0834 36 1 6.1747 -1.1920 -0.3915 37 1 5.6319 -2.8871 -0.4130 38 1 6.3314 -4.3543 -2.1446 39 1 9.1454 -3.2111 -4.9746 40 1 9.8275 -0.8133 -5.1826 41 1 9.6018 1.4885 -4.4154 42 1 8.0555 2.0665 -2.5962 43 1 6.7070 0.3510 -1.5087 44 1 4.2425 -0.5984 1.0609 45 1 3.6658 -2.2883 1.0411 46 1 0.6736 -2.3402 0.7980 47 1 -0.9280 -4.8618 2.2825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054777481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:15 Heat of formation + Delta-G solvation = 14.801822 kcal Electronic energy + Delta-G solvation = -28948.592586 eV Core-core repulsion = 25095.466670 eV Total energy + Delta-G solvation = -3853.125916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.03901 -40.99288 -39.05818 -38.24324 -35.69837 -35.18442 -33.90005 -32.27140 -32.13583 -31.26533 -29.45900 -29.20135 -26.99878 -25.74880 -24.88026 -24.50088 -23.60598 -22.36182 -20.70795 -20.14666 -19.40202 -18.92235 -18.55285 -18.05877 -17.48612 -17.10325 -16.52227 -16.30026 -15.91742 -15.74211 -15.42434 -15.31059 -15.05139 -14.75237 -14.57844 -14.49024 -14.35112 -14.12322 -13.65409 -13.49707 -13.35357 -13.08835 -13.03874 -12.94432 -12.87420 -12.80020 -12.68244 -12.32738 -12.07459 -11.99325 -11.92740 -11.45313 -11.42180 -11.21853 -10.99006 -10.78932 -10.48099 -10.01869 -9.64813 -9.01100 -8.98465 -7.91247 -5.19367 -0.60703 -0.05540 0.93411 1.49994 1.51230 1.56211 1.60041 1.98306 2.17707 2.58523 3.08734 3.34709 3.41100 3.48328 3.55806 3.72867 3.78499 3.86889 3.90960 3.93083 3.96207 4.06704 4.09954 4.21191 4.32282 4.36454 4.43268 4.53207 4.60227 4.65247 4.66677 4.72891 4.79957 4.88190 4.92312 4.98994 5.01450 5.10361 5.14410 5.21321 5.27590 5.34500 5.47608 5.51306 5.55717 5.61387 5.65891 5.94625 6.30117 6.54500 6.96819 7.10538 7.37629 8.12276 8.34319 9.32255 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.002683 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.992630 B =10431.924961 C =11254.936382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.111 0.889 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.526 3.474 7 O -0.584 6.584 8 C -0.087 4.087 9 C -0.106 4.106 10 C 0.064 3.936 11 N -0.514 5.514 12 C 0.139 3.861 13 C -0.131 4.131 14 C -0.086 4.086 15 C -0.122 4.122 16 C -0.094 4.094 17 C -0.131 4.131 18 C -0.030 4.030 19 C 0.078 3.922 20 C 0.162 3.838 21 H 0.087 0.913 22 N -0.723 5.723 23 C -0.230 4.230 24 H 0.086 0.914 25 C -0.076 4.076 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.261 1.261 29 H -0.300 1.300 30 H -0.302 1.302 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.149 0.851 39 H 0.196 0.804 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.092 13.619 -9.390 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.129 0.871 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.316 3.684 7 O -0.465 6.465 8 C -0.127 4.127 9 C -0.109 4.109 10 C -0.079 4.079 11 N -0.221 5.221 12 C -0.032 4.032 13 C -0.133 4.133 14 C -0.106 4.106 15 C -0.140 4.140 16 C -0.113 4.113 17 C -0.149 4.149 18 C -0.035 4.035 19 C -0.047 4.047 20 C 0.052 3.948 21 H 0.105 0.895 22 N -0.363 5.363 23 C -0.362 4.362 24 H 0.103 0.897 25 C -0.268 4.268 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.185 1.185 29 H -0.227 1.227 30 H -0.230 1.230 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.212 0.788 40 H 0.183 0.817 41 H 0.177 0.823 42 H 0.169 0.831 43 H 0.148 0.852 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.061 12.681 -10.004 25.755 hybrid contribution -1.097 -0.560 0.953 1.557 sum 18.965 12.121 -9.051 24.259 Atomic orbital electron populations 1.21471 0.93755 1.01335 1.01798 1.22602 0.96564 0.99364 0.93363 0.87119 1.22197 0.82826 0.97572 0.98193 1.48530 1.11739 1.65598 1.08106 1.20543 0.85487 0.76590 0.85746 1.90679 1.84060 1.55446 1.16303 1.20547 0.89768 1.05563 0.96782 1.20136 0.97730 0.94289 0.98714 1.22147 0.96148 0.95740 0.93829 1.67411 1.07021 1.38877 1.08821 1.23765 0.94997 0.87502 0.96937 1.19338 0.99339 0.96647 0.98005 1.21370 0.97898 0.92012 0.99293 1.21356 0.98579 0.97328 0.96743 1.21389 0.94314 1.00442 0.95152 1.21109 1.00675 0.91547 1.01554 1.18269 0.95345 0.94541 0.95385 1.23160 1.01453 1.02010 0.78071 1.21491 0.88319 0.88686 0.96327 0.89467 1.42635 1.49715 1.34281 1.09648 1.19696 1.18837 1.08765 0.88888 0.89663 1.25488 1.00267 1.00243 1.00782 1.69824 1.31818 1.26914 1.33584 0.85170 0.76939 0.77640 0.80592 1.18455 1.22734 1.22957 0.92225 0.91444 0.94487 0.94097 0.90871 0.85296 0.86587 0.83379 0.78776 0.81726 0.82274 0.83057 0.85233 0.88618 0.92367 0.79329 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 8.91 71.98 0.64 -3.15 16 2 C -0.10 -2.81 3.51 -9.40 -0.03 -2.84 16 3 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.11 3.69 6.33 86.86 0.55 4.24 16 5 N -0.61 -19.02 3.33 -811.78 -2.70 -21.72 16 6 C 0.53 17.04 7.84 87.66 0.69 17.73 16 7 O -0.58 -23.43 16.29 -3.04 -0.05 -23.48 16 8 C -0.09 -2.17 4.50 29.10 0.13 -2.04 16 9 C -0.11 -2.94 4.39 -19.75 -0.09 -3.03 16 10 C 0.06 1.87 10.72 84.11 0.90 2.77 16 11 N -0.51 -14.63 10.30 -195.54 -2.01 -16.65 16 12 C 0.14 3.10 11.05 85.30 0.94 4.04 16 13 C -0.13 -2.91 5.74 -21.31 -0.12 -3.03 16 14 C -0.09 -1.27 9.81 22.31 0.22 -1.05 16 15 C -0.12 -1.58 9.94 22.06 0.22 -1.36 16 16 C -0.09 -1.46 9.95 22.07 0.22 -1.24 16 17 C -0.13 -2.77 9.33 22.28 0.21 -2.56 16 18 C -0.03 -0.77 5.75 -21.28 -0.12 -0.90 16 19 C 0.08 2.29 6.23 86.73 0.54 2.83 16 20 C 0.16 5.35 3.39 46.18 0.16 5.51 16 21 H 0.09 2.68 8.09 -2.39 -0.02 2.66 16 22 N -0.72 -32.52 4.48 -317.33 -1.42 -33.94 16 23 C -0.23 -11.56 9.96 84.03 0.84 -10.73 16 24 H 0.09 4.00 7.83 -2.91 -0.02 3.98 16 25 C -0.08 -4.12 5.50 84.86 0.47 -3.65 16 26 N -0.97 -57.70 13.06 21.65 0.28 -57.41 16 27 Si 0.97 44.27 29.55 68.60 2.03 46.30 16 28 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.38 6.40 -2.39 -0.02 1.36 16 34 H 0.04 1.54 8.03 -2.39 -0.02 1.52 16 35 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 36 H 0.13 2.47 6.83 -2.38 -0.02 2.46 16 37 H 0.12 2.71 8.05 -2.39 -0.02 2.69 16 38 H 0.15 4.12 8.05 -2.91 -0.02 4.09 16 39 H 0.20 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 41 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.13 2.51 6.65 -2.91 -0.02 2.50 16 44 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 46 H 0.37 18.86 6.27 -92.71 -0.58 18.27 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -73.59 386.58 2.88 -70.70 By element: Atomic # 1 Polarization: 34.26 SS G_CDS: 0.40 Total: 34.66 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: 6.36 Total: 1.54 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -5.85 Total: -129.72 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.05 Total: -23.48 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.59 2.88 -70.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054777481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.504 kcal (2) G-P(sol) polarization free energy of solvation -73.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds