Wall clock time and date at job start Tue Mar 31 2020 22:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.47014 * 180.02562 * 8 6 5 10 10 C 1.39362 * 119.46647 * 269.72574 * 9 8 6 11 11 C 1.36137 * 120.86845 * 179.71510 * 10 9 8 12 12 C 1.40427 * 119.61307 * 0.55424 * 11 10 9 13 13 C 1.40766 * 121.37409 * 179.70686 * 12 11 10 14 14 C 1.36586 * 118.15218 * 180.02562 * 13 12 11 15 15 C 1.39327 * 119.93075 * 0.02562 * 14 13 12 16 16 N 1.31089 * 121.75349 * 359.97438 * 15 14 13 17 17 C 1.33682 * 121.31866 * 0.02562 * 16 15 14 18 18 C 1.36073 * 119.46920 * 89.99941 * 9 8 6 19 19 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 5 4 21 21 H 1.08997 * 110.87056 * 96.24201 * 20 19 5 22 22 N 1.46497 * 110.71583 * 219.44194 * 20 19 5 23 23 C 1.36936 * 120.00157 * 268.52321 * 22 20 19 24 24 H 1.07999 * 120.00237 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00050 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99959 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00110 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47355 * 90.00364 * 27 25 23 29 29 H 1.48508 * 109.47285 * 210.00340 * 27 25 23 30 30 H 1.48501 * 109.47187 * 330.00330 * 27 25 23 31 31 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 32 32 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 33 33 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 34 34 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 35 35 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 36 36 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 37 37 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 38 38 H 1.07997 * 119.56425 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.19179 * 180.27626 * 11 10 9 40 40 H 1.08004 * 120.92875 * 0.02562 * 13 12 11 41 41 H 1.07994 * 120.03478 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.12644 * 179.97438 * 15 14 13 43 43 H 1.08008 * 120.12427 * 0.02562 * 18 9 8 44 44 H 1.08993 * 109.88066 * 239.51797 * 19 5 4 45 45 H 1.09003 * 109.87770 * 118.35455 * 19 5 4 46 46 H 0.96996 * 119.99952 * 88.52453 * 22 20 19 47 47 H 0.97004 * 120.00137 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 6 6.7374 -2.2840 -2.1362 10 6 6.8103 -3.5746 -2.6571 11 6 7.6669 -3.8705 -3.6729 12 6 8.4967 -2.8655 -4.1959 13 6 9.4002 -3.1317 -5.2419 14 6 10.1763 -2.1054 -5.7000 15 6 10.0598 -0.8385 -5.1319 16 7 9.2172 -0.5942 -4.1578 17 6 8.4290 -1.5541 -3.6636 18 6 7.5267 -1.2864 -2.6191 19 6 3.4678 -1.2731 0.6969 20 6 2.0861 -0.8075 1.2025 21 1 1.4454 -1.6612 1.4231 22 7 2.2278 0.0502 2.3817 23 6 2.1990 -0.4994 3.6356 24 1 2.0722 -1.5653 3.7552 25 6 2.3328 0.3133 4.7529 26 7 2.4868 1.6123 4.6072 27 14 2.2927 -0.4363 6.4634 28 1 3.6711 -0.8055 6.8745 29 1 1.7375 0.5510 7.4237 30 1 1.4377 -1.6504 6.4518 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5248 -0.8836 33 1 -0.3633 -1.0275 -0.0125 34 1 1.4531 -1.6706 -1.4022 35 1 2.1567 -0.1721 -2.0834 36 1 6.1747 -1.1920 -0.3915 37 1 5.6319 -2.8871 -0.4130 38 1 6.1760 -4.3492 -2.2522 39 1 7.7113 -4.8733 -4.0713 40 1 9.4777 -4.1201 -5.6704 41 1 10.8796 -2.2756 -6.5017 42 1 10.6801 -0.0365 -5.5038 43 1 7.4612 -0.2927 -2.2009 44 1 4.2425 -0.5984 1.0609 45 1 3.6658 -2.2883 1.0411 46 1 2.3421 1.0074 2.2743 47 1 2.5799 2.1803 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054791061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:01 Heat of formation + Delta-G solvation = 29.635883 kcal Electronic energy + Delta-G solvation = -28135.923576 eV Core-core repulsion = 24283.440913 eV Total energy + Delta-G solvation = -3852.482663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.02838 -39.87209 -38.01057 -37.00980 -34.10065 -33.83491 -32.70286 -31.95857 -30.74628 -30.29475 -28.35343 -27.52515 -25.91384 -24.26255 -23.99534 -22.99088 -22.25914 -21.49604 -19.98661 -19.14082 -18.00947 -17.22811 -17.16604 -16.98359 -16.83939 -15.97515 -15.26519 -14.94435 -14.66713 -14.56739 -14.47027 -14.15478 -13.97200 -13.60080 -13.26007 -13.24637 -13.12886 -12.99634 -12.70144 -12.50999 -12.18090 -11.99037 -11.75352 -11.61233 -11.55422 -11.50587 -11.17406 -11.03395 -10.76830 -10.72147 -10.62884 -10.28736 -10.03606 -9.83983 -9.69086 -9.66438 -9.04501 -8.82962 -8.38967 -8.35106 -7.13863 -5.88998 -3.20106 0.23206 0.63281 1.83903 2.68747 2.80188 3.27266 3.36367 3.42263 3.43736 3.96250 4.07401 4.37059 4.47923 4.48367 4.61231 4.66094 4.71297 4.83611 4.91953 5.09044 5.10674 5.13854 5.19201 5.25044 5.33692 5.48940 5.53674 5.60424 5.62910 5.73390 5.73737 5.78572 5.81749 5.89358 5.92566 5.97894 6.17068 6.17454 6.22308 6.32090 6.34978 6.39316 6.45829 6.53412 6.59730 6.67918 6.83214 7.58892 7.74397 7.77248 8.27855 8.34554 9.40284 9.93930 10.28738 11.32748 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002249 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.397018 B =12447.152860 C =13232.393587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.529 3.471 7 O -0.547 6.547 8 C -0.103 4.103 9 C -0.039 4.039 10 C -0.095 4.095 11 C -0.100 4.100 12 C -0.103 4.103 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.126 3.874 16 N -0.472 5.472 17 C 0.130 3.870 18 C -0.079 4.079 19 C 0.070 3.930 20 C 0.177 3.823 21 H 0.069 0.931 22 N -0.711 5.711 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.908 3.092 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -10.073 -18.119 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.135 4.135 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.317 3.683 7 O -0.425 6.425 8 C -0.143 4.143 9 C -0.041 4.041 10 C -0.113 4.113 11 C -0.119 4.119 12 C -0.105 4.105 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.047 4.047 16 N -0.180 5.180 17 C 0.009 3.991 18 C -0.098 4.098 19 C -0.056 4.056 20 C 0.065 3.935 21 H 0.087 0.913 22 N -0.350 5.350 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.221 0.779 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.385 -9.316 -18.154 22.896 hybrid contribution 0.226 -0.886 0.644 1.118 sum 10.611 -10.202 -17.511 22.876 Atomic orbital electron populations 1.21596 0.93882 1.01638 1.01924 1.22664 0.96348 0.99826 0.94680 0.89875 1.22248 0.82753 0.98073 0.97796 1.48543 1.11985 1.66000 1.08130 1.20044 0.84581 0.77478 0.86196 1.90701 1.83184 1.54047 1.14569 1.20731 0.92021 1.04578 0.96975 1.19090 0.95259 0.93410 0.96379 1.20801 0.97971 0.96166 0.96341 1.20889 0.95886 0.98406 0.96720 1.18841 0.98687 0.94952 0.98058 1.21460 0.93246 0.99669 0.93997 1.21855 1.01575 0.94411 1.02239 1.22946 0.94388 0.95947 0.91423 1.68037 1.05037 1.33987 1.10902 1.18806 0.95489 0.88856 0.95937 1.20624 0.94477 0.99559 0.95142 1.23385 1.03508 1.01281 0.77421 1.21247 0.91535 0.93858 0.86902 0.91298 1.42365 1.86314 1.06244 1.00121 1.19237 1.43022 0.92564 0.83186 0.90965 1.24770 1.02259 0.95432 0.98000 1.69659 1.55861 1.02825 1.29206 0.86197 0.77654 0.77958 0.84371 1.21605 1.21728 1.20668 0.91349 0.93231 0.92862 0.91724 0.91040 0.87404 0.87578 0.85481 0.85205 0.84546 0.84683 0.82534 0.84724 0.90745 0.92154 0.77860 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.29 37.16 0.35 -1.49 16 2 C -0.12 -1.77 3.27 -88.47 -0.29 -2.06 16 3 H 0.08 1.37 8.01 -51.93 -0.42 0.96 16 4 C 0.11 1.68 6.38 -2.53 -0.02 1.66 16 5 N -0.61 -9.41 3.33 -170.52 -0.57 -9.97 16 6 C 0.53 8.23 7.84 -10.98 -0.09 8.14 16 7 O -0.55 -10.22 16.29 5.56 0.09 -10.13 16 8 C -0.10 -1.27 4.99 -29.03 -0.14 -1.42 16 9 C -0.04 -0.50 4.34 -104.98 -0.46 -0.95 16 10 C -0.09 -1.06 9.59 -39.92 -0.38 -1.45 16 11 C -0.10 -1.04 9.78 -39.51 -0.39 -1.42 16 12 C -0.10 -1.20 5.74 -106.80 -0.61 -1.81 16 13 C -0.06 -0.51 9.90 -39.22 -0.39 -0.90 16 14 C -0.18 -1.44 10.03 -39.77 -0.40 -1.84 16 15 C 0.13 1.23 11.15 -17.46 -0.19 1.03 16 16 N -0.47 -6.28 10.34 -10.97 -0.11 -6.40 16 17 C 0.13 1.78 6.60 -84.86 -0.56 1.22 16 18 C -0.08 -1.09 9.58 -39.47 -0.38 -1.47 16 19 C 0.07 1.12 6.24 -3.06 -0.02 1.10 16 20 C 0.18 3.15 3.09 -66.10 -0.20 2.94 16 21 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 22 N -0.71 -16.13 5.15 -51.65 -0.27 -16.39 16 23 C -0.25 -6.35 9.96 -15.06 -0.15 -6.50 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.86 16 27 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.07 1.07 8.04 -51.93 -0.42 0.66 16 36 H 0.11 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 44 H 0.07 1.29 8.03 -51.93 -0.42 0.87 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.39 9.51 7.76 -40.82 -0.32 9.20 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 393.31 15.07 5.93 5.93 Total: -1.00 -32.35 393.31 -10.66 -43.00 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.01 Total: 9.14 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.42 Total: -5.53 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.22 Total: -58.63 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.13 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.35 -10.66 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.640 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds