Wall clock time and date at job start Tue Mar 31 2020 22:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64758 * 204.17202 * 5 4 2 7 7 O 1.21283 * 120.00280 * 359.97331 * 6 5 4 8 8 C 1.50706 * 120.00115 * 179.97438 * 6 5 4 9 9 C 1.50696 * 109.47014 * 180.02562 * 8 6 5 10 10 C 1.39362 * 119.46647 * 269.72574 * 9 8 6 11 11 C 1.36137 * 120.86845 * 179.71510 * 10 9 8 12 12 C 1.40427 * 119.61307 * 0.55424 * 11 10 9 13 13 C 1.40766 * 121.37409 * 179.70686 * 12 11 10 14 14 C 1.36586 * 118.15218 * 180.02562 * 13 12 11 15 15 C 1.39327 * 119.93075 * 0.02562 * 14 13 12 16 16 N 1.31089 * 121.75349 * 359.97438 * 15 14 13 17 17 C 1.33682 * 121.31866 * 0.02562 * 16 15 14 18 18 C 1.36073 * 119.46920 * 89.99941 * 9 8 6 19 19 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 20 20 C 1.54327 * 107.26790 * 358.93814 * 19 5 4 21 21 H 1.08997 * 110.87056 * 96.24201 * 20 19 5 22 22 N 1.46497 * 110.71583 * 219.44194 * 20 19 5 23 23 C 1.36936 * 120.00157 * 268.52321 * 22 20 19 24 24 H 1.07999 * 120.00237 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00050 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99959 * 0.02562 * 25 23 22 27 27 Si 1.86791 * 120.00110 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47355 * 90.00364 * 27 25 23 29 29 H 1.48508 * 109.47285 * 210.00340 * 27 25 23 30 30 H 1.48501 * 109.47187 * 330.00330 * 27 25 23 31 31 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 32 32 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 33 33 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 34 34 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 35 35 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 36 36 H 1.09005 * 109.46757 * 300.00262 * 8 6 5 37 37 H 1.08998 * 109.46915 * 59.99877 * 8 6 5 38 38 H 1.07997 * 119.56425 * 359.97438 * 10 9 8 39 39 H 1.08000 * 120.19179 * 180.27626 * 11 10 9 40 40 H 1.08004 * 120.92875 * 0.02562 * 13 12 11 41 41 H 1.07994 * 120.03478 * 180.02562 * 14 13 12 42 42 H 1.07999 * 119.12644 * 179.97438 * 15 14 13 43 43 H 1.08008 * 120.12427 * 0.02562 * 18 9 8 44 44 H 1.08993 * 109.88066 * 239.51797 * 19 5 4 45 45 H 1.09003 * 109.87770 * 118.35455 * 19 5 4 46 46 H 0.96996 * 119.99952 * 88.52453 * 22 20 19 47 47 H 0.97004 * 120.00137 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4494 -1.5589 -1.5928 7 8 4.3032 -1.4969 -2.7952 8 6 5.7732 -1.9901 -1.0160 9 6 6.7374 -2.2840 -2.1362 10 6 6.8103 -3.5746 -2.6571 11 6 7.6669 -3.8705 -3.6729 12 6 8.4967 -2.8655 -4.1959 13 6 9.4002 -3.1317 -5.2419 14 6 10.1763 -2.1054 -5.7000 15 6 10.0598 -0.8385 -5.1319 16 7 9.2172 -0.5942 -4.1578 17 6 8.4290 -1.5541 -3.6636 18 6 7.5267 -1.2864 -2.6191 19 6 3.4678 -1.2731 0.6969 20 6 2.0861 -0.8075 1.2025 21 1 1.4454 -1.6612 1.4231 22 7 2.2278 0.0502 2.3817 23 6 2.1990 -0.4994 3.6356 24 1 2.0722 -1.5653 3.7552 25 6 2.3328 0.3133 4.7529 26 7 2.4868 1.6123 4.6072 27 14 2.2927 -0.4363 6.4634 28 1 3.6711 -0.8055 6.8745 29 1 1.7375 0.5510 7.4237 30 1 1.4377 -1.6504 6.4518 31 1 -0.3633 0.5029 0.8962 32 1 -0.3633 0.5248 -0.8836 33 1 -0.3633 -1.0275 -0.0125 34 1 1.4531 -1.6706 -1.4022 35 1 2.1567 -0.1721 -2.0834 36 1 6.1747 -1.1920 -0.3915 37 1 5.6319 -2.8871 -0.4130 38 1 6.1760 -4.3492 -2.2522 39 1 7.7113 -4.8733 -4.0713 40 1 9.4777 -4.1201 -5.6704 41 1 10.8796 -2.2756 -6.5017 42 1 10.6801 -0.0365 -5.5038 43 1 7.4612 -0.2927 -2.2009 44 1 4.2425 -0.5984 1.0609 45 1 3.6658 -2.2883 1.0411 46 1 2.3421 1.0074 2.2743 47 1 2.5799 2.1803 5.3880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054791061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:00 Heat of formation + Delta-G solvation = 10.678968 kcal Electronic energy + Delta-G solvation = -28136.745609 eV Core-core repulsion = 24283.440913 eV Total energy + Delta-G solvation = -3853.304697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.85786 -41.09381 -39.19791 -38.02819 -35.83431 -34.64803 -34.01365 -32.95710 -32.41633 -31.09500 -29.35572 -29.04977 -27.02237 -25.82647 -25.00950 -23.91312 -23.12832 -22.82577 -21.37751 -20.33171 -19.08917 -18.80903 -18.14051 -17.97167 -17.78820 -17.25994 -16.60552 -16.36049 -15.70577 -15.45807 -15.39231 -15.31443 -15.19107 -14.97791 -14.58645 -14.51056 -14.08991 -13.91135 -13.86502 -13.76399 -13.45021 -13.01982 -12.97946 -12.84574 -12.82407 -12.61387 -12.48979 -12.31790 -12.17772 -12.12514 -12.02185 -11.67072 -11.52065 -11.42469 -11.03130 -10.87346 -10.44812 -9.65672 -9.65152 -9.21967 -9.03914 -7.92234 -5.21902 -0.53690 -0.16765 1.03452 1.52020 1.52132 1.56756 1.60406 1.81531 2.15159 2.58816 3.11873 3.28856 3.39317 3.46631 3.60196 3.67337 3.82469 3.89789 3.90058 3.93772 4.02748 4.08373 4.18407 4.24030 4.26606 4.38394 4.47866 4.52700 4.54766 4.60587 4.63371 4.68938 4.85128 4.90148 4.92511 5.00808 5.05469 5.11915 5.14110 5.15672 5.25880 5.33552 5.38631 5.48826 5.49423 5.57830 5.62042 5.90217 6.28030 6.50609 6.97199 7.09948 7.35919 8.07806 8.31358 9.30679 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002249 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.397018 B =12447.152860 C =13232.393587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.067 0.933 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.580 6.580 8 C -0.098 4.098 9 C -0.046 4.046 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.124 4.124 13 C -0.057 4.057 14 C -0.175 4.175 15 C 0.121 3.879 16 N -0.518 5.518 17 C 0.101 3.899 18 C -0.110 4.110 19 C 0.083 3.917 20 C 0.171 3.829 21 H 0.075 0.925 22 N -0.722 5.722 23 C -0.237 4.237 24 H 0.083 0.917 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.968 3.032 28 H -0.289 1.289 29 H -0.302 1.302 30 H -0.267 1.267 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.118 0.882 44 H 0.059 0.941 45 H 0.079 0.921 46 H 0.374 0.626 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.287 -13.206 -19.839 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 H 0.085 0.915 4 C -0.006 4.006 5 N -0.346 5.346 6 C 0.318 3.682 7 O -0.460 6.460 8 C -0.137 4.137 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.109 4.109 12 C -0.126 4.126 13 C -0.082 4.082 14 C -0.195 4.195 15 C -0.051 4.051 16 N -0.227 5.227 17 C -0.019 4.019 18 C -0.129 4.129 19 C -0.043 4.043 20 C 0.060 3.940 21 H 0.093 0.907 22 N -0.360 5.360 23 C -0.369 4.369 24 H 0.101 0.899 25 C -0.265 4.265 26 N -0.619 5.619 27 Si 0.798 3.202 28 H -0.216 1.216 29 H -0.229 1.229 30 H -0.192 1.192 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.193 0.807 42 H 0.201 0.799 43 H 0.136 0.864 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.206 0.794 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.085 -12.500 -19.900 25.984 hybrid contribution 0.076 0.084 0.984 0.991 sum 11.161 -12.417 -18.916 25.230 Atomic orbital electron populations 1.21551 0.92425 1.02639 1.01846 1.22560 0.97497 0.98709 0.93868 0.91486 1.22270 0.82728 0.98528 0.97041 1.48574 1.12384 1.65874 1.07768 1.20536 0.85275 0.76629 0.85721 1.90682 1.83784 1.55534 1.16005 1.20752 0.90154 1.05640 0.97150 1.19204 0.94999 0.94098 0.96496 1.21072 0.99034 0.95881 0.97124 1.21321 0.94350 0.99595 0.95638 1.19185 0.99911 0.94335 0.99162 1.21933 0.91960 1.01590 0.92748 1.22287 1.01559 0.93194 1.02439 1.23595 0.93386 0.97913 0.90243 1.68015 1.06744 1.34939 1.12987 1.19028 0.96067 0.90293 0.96537 1.20664 0.96289 0.99350 0.96606 1.23058 1.01597 1.01863 0.77738 1.21446 0.92672 0.93702 0.86142 0.90668 1.42492 1.86503 1.06144 1.00898 1.19640 1.40113 0.92954 0.84174 0.89882 1.25512 1.03649 0.95845 1.01468 1.69815 1.58495 1.04119 1.29444 0.85217 0.77521 0.77270 0.80195 1.21611 1.22893 1.19172 0.93450 0.91222 0.91357 0.89916 0.91416 0.87215 0.85032 0.83451 0.81677 0.80872 0.80692 0.79931 0.86423 0.92278 0.90228 0.79375 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.29 71.98 0.67 -2.69 16 2 C -0.11 -3.21 3.27 -9.40 -0.03 -3.24 16 3 H 0.07 2.25 8.01 -2.39 -0.02 2.23 16 4 C 0.12 3.30 6.38 86.86 0.55 3.85 16 5 N -0.61 -18.32 3.33 -811.78 -2.70 -21.02 16 6 C 0.53 16.30 7.84 87.66 0.69 16.98 16 7 O -0.58 -21.77 16.29 -3.04 -0.05 -21.82 16 8 C -0.10 -2.38 4.99 29.10 0.15 -2.24 16 9 C -0.05 -1.18 4.34 -20.10 -0.09 -1.27 16 10 C -0.11 -2.40 9.59 22.05 0.21 -2.19 16 11 C -0.09 -1.69 9.78 22.31 0.22 -1.47 16 12 C -0.12 -2.72 5.74 -21.28 -0.12 -2.85 16 13 C -0.06 -0.83 9.90 22.50 0.22 -0.60 16 14 C -0.18 -2.28 10.03 22.15 0.22 -2.05 16 15 C 0.12 2.22 11.15 85.07 0.95 3.17 16 16 N -0.52 -14.21 10.34 -188.63 -1.95 -16.16 16 17 C 0.10 2.85 6.60 40.29 0.27 3.12 16 18 C -0.11 -3.24 9.58 22.34 0.21 -3.03 16 19 C 0.08 2.58 6.24 86.73 0.54 3.12 16 20 C 0.17 5.93 3.09 46.18 0.14 6.08 16 21 H 0.08 2.55 7.99 -2.39 -0.02 2.53 16 22 N -0.72 -32.96 5.15 -317.34 -1.63 -34.59 16 23 C -0.24 -12.01 9.96 84.03 0.84 -11.17 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 26 N -0.97 -56.91 13.06 21.65 0.28 -56.63 16 27 Si 0.97 43.89 29.55 68.60 2.03 45.92 16 28 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 29 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 34 H 0.08 2.07 8.03 -2.39 -0.02 2.05 16 35 H 0.07 1.99 8.04 -2.39 -0.02 1.97 16 36 H 0.11 2.60 8.07 -2.38 -0.02 2.58 16 37 H 0.13 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 39 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 44 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.37 18.93 7.76 -92.71 -0.72 18.21 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -72.84 393.31 2.34 -70.50 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.26 Total: 33.74 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 6.10 Total: 0.06 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.00 Total: -128.40 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.84 2.34 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.180 kcal (2) G-P(sol) polarization free energy of solvation -72.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds