Wall clock time and date at job start Tue Mar 31 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88461 * 2 1 4 4 C 1.55130 * 110.90585 * 124.09779 * 2 1 3 5 5 N 1.47425 * 104.72570 * 155.27955 * 4 2 1 6 6 C 1.34770 * 125.65280 * 155.81498 * 5 4 2 7 7 O 1.21281 * 119.99909 * 359.71576 * 6 5 4 8 8 C 1.50692 * 120.00248 * 179.71679 * 6 5 4 9 9 C 1.50702 * 109.47424 * 180.02562 * 8 6 5 10 10 C 1.39362 * 119.46526 * 89.99846 * 9 8 6 11 11 C 1.36143 * 120.86615 * 180.02562 * 10 9 8 12 12 C 1.40428 * 119.61307 * 0.25259 * 11 10 9 13 13 C 1.40769 * 121.37275 * 180.25502 * 12 11 10 14 14 C 1.36577 * 118.15038 * 179.68112 * 13 12 11 15 15 C 1.39337 * 119.93509 * 359.75722 * 14 13 12 16 16 N 1.31087 * 121.74787 * 0.02562 * 15 14 13 17 17 C 1.33676 * 121.31981 * 359.97438 * 16 15 14 18 18 C 1.36075 * 119.46991 * 269.97787 * 9 8 6 19 19 C 1.47025 * 108.69605 * 335.55270 * 5 4 2 20 20 C 1.54322 * 107.27713 * 1.28578 * 19 5 4 21 21 H 1.08999 * 110.72235 * 263.83502 * 20 19 5 22 22 N 1.46496 * 110.72208 * 140.73273 * 20 19 5 23 23 C 1.36945 * 119.99526 * 86.45347 * 22 20 19 24 24 H 1.07995 * 120.00141 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99480 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00066 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99627 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46761 * 90.00141 * 27 25 23 29 29 H 1.48502 * 109.46880 * 210.00169 * 27 25 23 30 30 H 1.48496 * 109.47149 * 330.00366 * 27 25 23 31 31 H 1.09002 * 109.46911 * 183.87709 * 1 2 3 32 32 H 1.08993 * 109.47118 * 303.87586 * 1 2 3 33 33 H 1.08994 * 109.47047 * 63.88260 * 1 2 3 34 34 H 1.09000 * 110.49860 * 36.43152 * 4 2 1 35 35 H 1.09003 * 110.34123 * 274.04246 * 4 2 1 36 36 H 1.08996 * 109.47576 * 59.99687 * 8 6 5 37 37 H 1.09009 * 109.47118 * 299.99864 * 8 6 5 38 38 H 1.08003 * 119.56730 * 0.02562 * 10 9 8 39 39 H 1.08002 * 120.18880 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.92668 * 359.45813 * 13 12 11 41 41 H 1.08005 * 120.03480 * 179.77337 * 14 13 12 42 42 H 1.08000 * 119.12743 * 179.97438 * 15 14 13 43 43 H 1.08003 * 120.11844 * 0.02562 * 18 9 8 44 44 H 1.08997 * 109.88250 * 120.71118 * 19 5 4 45 45 H 1.09008 * 109.87701 * 241.70973 * 19 5 4 46 46 H 0.96998 * 120.00277 * 266.45623 * 22 20 19 47 47 H 0.96997 * 119.99792 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4272 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 4.3008 -1.5010 2.7958 8 6 5.7712 -1.9945 1.0171 9 6 6.7340 -2.2920 2.1376 10 6 6.8002 -3.5822 2.6602 11 6 7.6592 -3.8824 3.6728 12 6 8.4861 -2.8783 4.2020 13 6 9.3914 -3.1488 5.2455 14 6 10.1687 -2.1246 5.7059 15 6 10.0551 -0.8566 5.1395 16 7 9.2140 -0.6093 4.1649 17 6 8.4246 -1.5672 3.6685 18 6 7.5250 -1.2966 2.6226 19 6 3.4675 -1.2738 -0.6964 20 6 2.0862 -0.8074 -1.2026 21 1 1.4468 -1.6626 -1.4216 22 7 2.2285 0.0471 -2.3839 23 6 2.3016 -0.5148 -3.6306 24 1 2.2539 -1.5879 -3.7429 25 6 2.4358 0.2950 -4.7501 26 7 2.4934 1.6028 -4.6132 27 14 2.5348 -0.4715 -6.4507 28 1 1.1675 -0.6013 -7.0154 29 1 3.3562 0.3927 -7.3361 30 1 3.1594 -1.8152 -6.3525 31 1 -0.3633 -1.0253 0.0695 32 1 -0.3633 0.5728 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4524 -1.6787 1.3981 35 1 2.1515 -0.1810 2.0860 36 1 6.1741 -1.1965 0.3936 37 1 5.6290 -2.8908 0.4132 38 1 6.1617 -4.3541 2.2565 39 1 7.7012 -4.8860 4.0699 40 1 9.4666 -4.1379 5.6727 41 1 10.8710 -2.2973 6.5080 42 1 10.6758 -0.0560 5.5139 43 1 7.4610 -0.3021 2.2062 44 1 4.2426 -0.5993 -1.0600 45 1 3.6679 -2.2884 -1.0408 46 1 2.2709 1.0109 -2.2831 47 1 2.5875 2.1686 -5.3954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054791063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:08 Heat of formation + Delta-G solvation = 29.812673 kcal Electronic energy + Delta-G solvation = -28148.676589 eV Core-core repulsion = 24296.201592 eV Total energy + Delta-G solvation = -3852.474997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.02705 -39.87020 -38.00829 -37.00762 -34.09563 -33.83357 -32.70705 -31.95959 -30.74331 -30.29303 -28.35322 -27.50774 -25.91241 -24.26273 -24.01398 -22.98949 -22.25724 -21.49151 -19.98593 -19.13858 -18.00602 -17.20435 -17.15731 -16.98265 -16.83860 -15.98930 -15.26597 -14.94500 -14.66577 -14.56860 -14.46586 -14.15520 -13.97334 -13.59795 -13.27214 -13.25036 -13.12753 -12.98600 -12.69107 -12.53851 -12.18522 -11.99099 -11.75153 -11.60826 -11.55939 -11.51219 -11.17874 -11.02085 -10.77349 -10.72088 -10.64191 -10.29444 -9.99852 -9.83539 -9.69527 -9.66463 -9.04639 -8.82748 -8.38777 -8.34854 -7.13634 -5.88875 -3.20018 0.23367 0.63449 1.84064 2.68948 2.80340 3.27425 3.36521 3.42230 3.43792 3.96420 4.07584 4.37233 4.47969 4.48510 4.61389 4.66226 4.70853 4.83788 4.92046 5.08563 5.10619 5.13470 5.18745 5.24982 5.33856 5.49343 5.52756 5.60068 5.63120 5.73564 5.73882 5.78729 5.81060 5.88656 5.92754 5.97565 6.16603 6.17605 6.22682 6.32134 6.34708 6.39511 6.45406 6.52695 6.58938 6.68086 6.83893 7.59066 7.74563 7.77420 8.28094 8.34691 9.40512 9.94240 10.29040 11.32916 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.002276 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.670524 B =12298.032562 C =13136.487527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.529 3.471 7 O -0.547 6.547 8 C -0.103 4.103 9 C -0.039 4.039 10 C -0.095 4.095 11 C -0.101 4.101 12 C -0.103 4.103 13 C -0.058 4.058 14 C -0.181 4.181 15 C 0.126 3.874 16 N -0.472 5.472 17 C 0.130 3.870 18 C -0.079 4.079 19 C 0.071 3.929 20 C 0.177 3.823 21 H 0.066 0.934 22 N -0.712 5.712 23 C -0.249 4.249 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.436 -10.040 18.163 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.317 3.683 7 O -0.425 6.425 8 C -0.143 4.143 9 C -0.041 4.041 10 C -0.113 4.113 11 C -0.119 4.119 12 C -0.105 4.105 13 C -0.084 4.084 14 C -0.201 4.201 15 C -0.047 4.047 16 N -0.180 5.180 17 C 0.009 3.991 18 C -0.098 4.098 19 C -0.055 4.055 20 C 0.065 3.935 21 H 0.084 0.916 22 N -0.352 5.352 23 C -0.380 4.380 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.222 0.778 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.277 -9.285 18.206 22.875 hybrid contribution 0.251 -0.901 -0.648 1.138 sum 10.528 -10.186 17.558 22.866 Atomic orbital electron populations 1.21612 0.93890 1.01538 1.02108 1.22661 0.96315 0.99779 0.94567 0.89781 1.22297 0.82724 0.98054 0.97778 1.48549 1.11932 1.66045 1.08144 1.20040 0.84596 0.77464 0.86191 1.90701 1.83165 1.54077 1.14571 1.20730 0.92039 1.04565 0.96978 1.19093 0.95261 0.93427 0.96366 1.20803 0.97902 0.96157 0.96392 1.20891 0.95916 0.98392 0.96729 1.18843 0.98696 0.94941 0.98039 1.21458 0.93199 0.99673 0.94052 1.21858 1.01591 0.94419 1.02210 1.22948 0.94400 0.95919 0.91442 1.68033 1.05028 1.34025 1.10871 1.18803 0.95503 0.88895 0.95899 1.20624 0.94489 0.99556 0.95121 1.23380 1.03517 1.01275 0.77367 1.21233 0.91535 0.93865 0.86891 0.91625 1.42359 1.86954 1.05339 1.00507 1.19226 1.43294 0.91890 0.83570 0.90976 1.24772 1.02315 0.95362 0.98004 1.69658 1.56341 1.02374 1.29179 0.86198 0.77537 0.78085 0.84372 1.21617 1.21722 1.20662 0.92854 0.93168 0.91321 0.91684 0.91009 0.87391 0.87584 0.85482 0.85206 0.84547 0.84683 0.82533 0.84722 0.90698 0.92208 0.77848 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.74 3.27 -88.35 -0.29 -2.03 16 3 H 0.08 1.38 8.01 -51.93 -0.42 0.96 16 4 C 0.11 1.68 6.38 -2.41 -0.02 1.66 16 5 N -0.61 -9.43 3.32 -170.38 -0.57 -10.00 16 6 C 0.53 8.25 7.84 -10.99 -0.09 8.16 16 7 O -0.55 -10.23 16.29 5.56 0.09 -10.14 16 8 C -0.10 -1.28 4.99 -29.04 -0.14 -1.42 16 9 C -0.04 -0.50 4.34 -104.98 -0.46 -0.96 16 10 C -0.09 -1.07 9.59 -39.92 -0.38 -1.45 16 11 C -0.10 -1.04 9.78 -39.51 -0.39 -1.43 16 12 C -0.10 -1.20 5.74 -106.80 -0.61 -1.81 16 13 C -0.06 -0.51 9.90 -39.23 -0.39 -0.90 16 14 C -0.18 -1.45 10.03 -39.77 -0.40 -1.85 16 15 C 0.13 1.23 11.15 -17.46 -0.19 1.04 16 16 N -0.47 -6.29 10.34 -10.97 -0.11 -6.41 16 17 C 0.13 1.78 6.60 -84.86 -0.56 1.22 16 18 C -0.08 -1.09 9.58 -39.47 -0.38 -1.47 16 19 C 0.07 1.13 6.24 -3.06 -0.02 1.12 16 20 C 0.18 3.15 3.05 -66.10 -0.20 2.95 16 21 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 22 N -0.71 -16.16 5.18 -51.65 -0.27 -16.43 16 23 C -0.25 -6.35 9.98 -15.05 -0.15 -6.50 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.93 -26.59 13.06 55.49 0.72 -25.87 16 27 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.05 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 35 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 36 H 0.11 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.11 1.09 8.08 -51.92 -0.42 0.67 16 38 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 39 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 45 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.39 9.52 7.73 -40.82 -0.32 9.20 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 393.25 15.07 5.93 5.93 Total: -1.00 -32.36 393.25 -10.65 -43.01 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.01 Total: 9.16 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -4.41 Total: -5.46 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.22 Total: -58.71 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.36 -10.65 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.821 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds