Wall clock time and date at job start Tue Mar 31 2020 22:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.88461 * 2 1 4 4 C 1.55130 * 110.90585 * 124.09779 * 2 1 3 5 5 N 1.47425 * 104.72570 * 155.27955 * 4 2 1 6 6 C 1.34770 * 125.65280 * 155.81498 * 5 4 2 7 7 O 1.21281 * 119.99909 * 359.71576 * 6 5 4 8 8 C 1.50692 * 120.00248 * 179.71679 * 6 5 4 9 9 C 1.50702 * 109.47424 * 180.02562 * 8 6 5 10 10 C 1.39362 * 119.46526 * 89.99846 * 9 8 6 11 11 C 1.36143 * 120.86615 * 180.02562 * 10 9 8 12 12 C 1.40428 * 119.61307 * 0.25259 * 11 10 9 13 13 C 1.40769 * 121.37275 * 180.25502 * 12 11 10 14 14 C 1.36577 * 118.15038 * 179.68112 * 13 12 11 15 15 C 1.39337 * 119.93509 * 359.75722 * 14 13 12 16 16 N 1.31087 * 121.74787 * 0.02562 * 15 14 13 17 17 C 1.33676 * 121.31981 * 359.97438 * 16 15 14 18 18 C 1.36075 * 119.46991 * 269.97787 * 9 8 6 19 19 C 1.47025 * 108.69605 * 335.55270 * 5 4 2 20 20 C 1.54322 * 107.27713 * 1.28578 * 19 5 4 21 21 H 1.08999 * 110.72235 * 263.83502 * 20 19 5 22 22 N 1.46496 * 110.72208 * 140.73273 * 20 19 5 23 23 C 1.36945 * 119.99526 * 86.45347 * 22 20 19 24 24 H 1.07995 * 120.00141 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99480 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00066 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99627 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.46761 * 90.00141 * 27 25 23 29 29 H 1.48502 * 109.46880 * 210.00169 * 27 25 23 30 30 H 1.48496 * 109.47149 * 330.00366 * 27 25 23 31 31 H 1.09002 * 109.46911 * 183.87709 * 1 2 3 32 32 H 1.08993 * 109.47118 * 303.87586 * 1 2 3 33 33 H 1.08994 * 109.47047 * 63.88260 * 1 2 3 34 34 H 1.09000 * 110.49860 * 36.43152 * 4 2 1 35 35 H 1.09003 * 110.34123 * 274.04246 * 4 2 1 36 36 H 1.08996 * 109.47576 * 59.99687 * 8 6 5 37 37 H 1.09009 * 109.47118 * 299.99864 * 8 6 5 38 38 H 1.08003 * 119.56730 * 0.02562 * 10 9 8 39 39 H 1.08002 * 120.18880 * 179.97438 * 11 10 9 40 40 H 1.08000 * 120.92668 * 359.45813 * 13 12 11 41 41 H 1.08005 * 120.03480 * 179.77337 * 14 13 12 42 42 H 1.08000 * 119.12743 * 179.97438 * 15 14 13 43 43 H 1.08003 * 120.11844 * 0.02562 * 18 9 8 44 44 H 1.08997 * 109.88250 * 120.71118 * 19 5 4 45 45 H 1.09008 * 109.87701 * 241.70973 * 19 5 4 46 46 H 0.96998 * 120.00277 * 266.45623 * 22 20 19 47 47 H 0.96997 * 119.99792 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8124 1.2000 5 7 3.4272 -1.2433 0.7729 6 6 4.4477 -1.5621 1.5935 7 8 4.3008 -1.5010 2.7958 8 6 5.7712 -1.9945 1.0171 9 6 6.7340 -2.2920 2.1376 10 6 6.8002 -3.5822 2.6602 11 6 7.6592 -3.8824 3.6728 12 6 8.4861 -2.8783 4.2020 13 6 9.3914 -3.1488 5.2455 14 6 10.1687 -2.1246 5.7059 15 6 10.0551 -0.8566 5.1395 16 7 9.2140 -0.6093 4.1649 17 6 8.4246 -1.5672 3.6685 18 6 7.5250 -1.2966 2.6226 19 6 3.4675 -1.2738 -0.6964 20 6 2.0862 -0.8074 -1.2026 21 1 1.4468 -1.6626 -1.4216 22 7 2.2285 0.0471 -2.3839 23 6 2.3016 -0.5148 -3.6306 24 1 2.2539 -1.5879 -3.7429 25 6 2.4358 0.2950 -4.7501 26 7 2.4934 1.6028 -4.6132 27 14 2.5348 -0.4715 -6.4507 28 1 1.1675 -0.6013 -7.0154 29 1 3.3562 0.3927 -7.3361 30 1 3.1594 -1.8152 -6.3525 31 1 -0.3633 -1.0253 0.0695 32 1 -0.3633 0.5728 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4524 -1.6787 1.3981 35 1 2.1515 -0.1810 2.0860 36 1 6.1741 -1.1965 0.3936 37 1 5.6290 -2.8908 0.4132 38 1 6.1617 -4.3541 2.2565 39 1 7.7012 -4.8860 4.0699 40 1 9.4666 -4.1379 5.6727 41 1 10.8710 -2.2973 6.5080 42 1 10.6758 -0.0560 5.5139 43 1 7.4610 -0.3021 2.2062 44 1 4.2426 -0.5993 -1.0600 45 1 3.6679 -2.2884 -1.0408 46 1 2.2709 1.0109 -2.2831 47 1 2.5875 2.1686 -5.3954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054791063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:07 Heat of formation + Delta-G solvation = 10.838275 kcal Electronic energy + Delta-G solvation = -28149.499381 eV Core-core repulsion = 24296.201592 eV Total energy + Delta-G solvation = -3853.297789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.85858 -41.09327 -39.19669 -38.02775 -35.83072 -34.64863 -34.01765 -32.95747 -32.41555 -31.09540 -29.35397 -29.03603 -27.01796 -25.84791 -25.00968 -23.91245 -23.12791 -22.82296 -21.37632 -20.33410 -19.05893 -18.81120 -18.14347 -17.97329 -17.78924 -17.26947 -16.60391 -16.36522 -15.70814 -15.45665 -15.39020 -15.31760 -15.18914 -14.97961 -14.57655 -14.54029 -14.08479 -13.91189 -13.86613 -13.77778 -13.44887 -13.03169 -12.99125 -12.83556 -12.81473 -12.61395 -12.48889 -12.32005 -12.21910 -12.09580 -12.01661 -11.66711 -11.51679 -11.39142 -11.04708 -10.87557 -10.44798 -9.65711 -9.65036 -9.22031 -9.04096 -7.92228 -5.21954 -0.53720 -0.16791 1.03428 1.51993 1.52104 1.56678 1.60390 1.81498 2.15106 2.58759 3.11841 3.28841 3.39537 3.45785 3.60089 3.67285 3.81838 3.89028 3.89992 3.93273 4.02681 4.08325 4.18358 4.23796 4.26518 4.38433 4.47713 4.52603 4.54778 4.60580 4.62964 4.68859 4.85088 4.90270 4.92247 5.00765 5.05439 5.11744 5.14078 5.15723 5.25267 5.33295 5.38568 5.48823 5.49520 5.58034 5.62014 5.90184 6.28185 6.50450 6.97208 7.09839 7.36036 8.07984 8.31497 9.30723 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.002276 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.670524 B =12298.032562 C =13136.487527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 H 0.068 0.932 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.579 6.579 8 C -0.098 4.098 9 C -0.046 4.046 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.124 4.124 13 C -0.057 4.057 14 C -0.175 4.175 15 C 0.121 3.879 16 N -0.518 5.518 17 C 0.101 3.899 18 C -0.110 4.110 19 C 0.084 3.916 20 C 0.171 3.829 21 H 0.072 0.928 22 N -0.723 5.723 23 C -0.237 4.237 24 H 0.083 0.917 25 C -0.072 4.072 26 N -0.968 5.968 27 Si 0.968 3.032 28 H -0.290 1.290 29 H -0.302 1.302 30 H -0.266 1.266 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.118 0.882 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.374 0.626 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.224 -13.175 19.910 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.086 0.914 4 C -0.006 4.006 5 N -0.346 5.346 6 C 0.318 3.682 7 O -0.460 6.460 8 C -0.137 4.137 9 C -0.048 4.048 10 C -0.131 4.131 11 C -0.109 4.109 12 C -0.126 4.126 13 C -0.082 4.082 14 C -0.195 4.195 15 C -0.051 4.051 16 N -0.227 5.227 17 C -0.019 4.019 18 C -0.129 4.129 19 C -0.042 4.042 20 C 0.060 3.940 21 H 0.090 0.910 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.101 0.899 25 C -0.265 4.265 26 N -0.619 5.619 27 Si 0.798 3.202 28 H -0.217 1.217 29 H -0.229 1.229 30 H -0.191 1.191 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.183 0.817 40 H 0.191 0.809 41 H 0.193 0.807 42 H 0.201 0.799 43 H 0.136 0.864 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.206 0.794 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.059 -12.471 19.978 26.018 hybrid contribution 0.074 0.070 -0.998 1.003 sum 11.133 -12.401 18.980 25.258 Atomic orbital electron populations 1.21567 0.92386 1.02721 1.01883 1.22565 0.97504 0.98665 0.93710 0.91370 1.22326 0.82664 0.98526 0.97043 1.48579 1.12357 1.65923 1.07759 1.20527 0.85285 0.76624 0.85720 1.90682 1.83761 1.55550 1.15991 1.20750 0.90199 1.05603 0.97161 1.19204 0.94996 0.94117 0.96478 1.21072 0.98978 0.95868 0.97183 1.21321 0.94370 0.99588 0.95631 1.19188 0.99923 0.94325 0.99147 1.21931 0.91912 1.01595 0.92797 1.22290 1.01573 0.93200 1.02411 1.23598 0.93396 0.97884 0.90258 1.68012 1.06733 1.34979 1.12958 1.19024 0.96080 0.90332 0.96492 1.20662 0.96305 0.99340 0.96589 1.23051 1.01622 1.01803 0.77723 1.21431 0.92644 0.93739 0.86151 0.90982 1.42490 1.87118 1.05217 1.01319 1.19629 1.40363 0.92335 0.84521 0.89889 1.25515 1.03724 0.95785 1.01447 1.69813 1.58970 1.03667 1.29423 0.85221 0.77095 0.77656 0.80264 1.21727 1.22871 1.19051 0.91264 0.91212 0.93403 0.89856 0.91358 0.87227 0.85065 0.83468 0.81675 0.80872 0.80687 0.79925 0.86427 0.92309 0.90337 0.79351 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.31 71.98 0.67 -2.68 16 2 C -0.10 -3.15 3.27 -9.32 -0.03 -3.18 16 3 H 0.07 2.28 8.01 -2.39 -0.02 2.26 16 4 C 0.12 3.29 6.38 86.93 0.55 3.85 16 5 N -0.61 -18.37 3.32 -811.36 -2.70 -21.07 16 6 C 0.53 16.34 7.84 87.66 0.69 17.02 16 7 O -0.58 -21.77 16.29 -3.03 -0.05 -21.82 16 8 C -0.10 -2.40 4.99 29.10 0.15 -2.25 16 9 C -0.05 -1.18 4.34 -20.10 -0.09 -1.27 16 10 C -0.11 -2.41 9.59 22.05 0.21 -2.20 16 11 C -0.09 -1.69 9.78 22.32 0.22 -1.47 16 12 C -0.12 -2.73 5.74 -21.28 -0.12 -2.85 16 13 C -0.06 -0.83 9.90 22.50 0.22 -0.61 16 14 C -0.18 -2.28 10.03 22.15 0.22 -2.05 16 15 C 0.12 2.22 11.15 85.07 0.95 3.17 16 16 N -0.52 -14.22 10.34 -188.63 -1.95 -16.18 16 17 C 0.10 2.85 6.60 40.29 0.27 3.12 16 18 C -0.11 -3.24 9.58 22.34 0.21 -3.03 16 19 C 0.08 2.61 6.24 86.73 0.54 3.15 16 20 C 0.17 5.94 3.05 46.18 0.14 6.08 16 21 H 0.07 2.45 8.02 -2.39 -0.02 2.43 16 22 N -0.72 -33.04 5.18 -317.33 -1.64 -34.68 16 23 C -0.24 -12.00 9.98 84.03 0.84 -11.16 16 24 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 26 N -0.97 -56.93 13.06 21.65 0.28 -56.65 16 27 Si 0.97 43.90 29.55 68.60 2.03 45.93 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 30 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 31 H 0.07 1.59 8.07 -2.39 -0.02 1.57 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 35 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 36 H 0.11 2.62 8.07 -2.39 -0.02 2.60 16 37 H 0.13 2.49 8.08 -2.38 -0.02 2.47 16 38 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.06 2.05 8.03 -2.39 -0.02 2.03 16 45 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 46 H 0.37 18.94 7.73 -92.71 -0.72 18.22 16 47 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -72.86 393.25 2.33 -70.53 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.26 Total: 33.76 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.11 Total: 0.19 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -6.01 Total: -128.58 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.86 2.33 -70.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.364 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds