Wall clock time and date at job start Tue Mar 31 2020 22:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.88688 * 2 1 4 4 C 1.55121 * 110.94048 * 124.07936 * 2 1 3 5 5 N 1.47426 * 104.71990 * 155.28770 * 4 2 1 6 6 C 1.34780 * 125.64500 * 155.82117 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.71076 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.71753 * 6 5 4 9 9 C 1.50703 * 109.47064 * 179.97438 * 8 6 5 10 10 C 1.39354 * 119.46735 * 89.99969 * 9 8 6 11 11 C 1.36136 * 120.87080 * 179.97438 * 10 9 8 12 12 C 1.40433 * 119.60956 * 359.97438 * 11 10 9 13 13 C 1.40766 * 121.37038 * 180.02562 * 12 11 10 14 14 C 1.36582 * 118.15084 * 179.97438 * 13 12 11 15 15 C 1.39322 * 119.93152 * 359.97438 * 14 13 12 16 16 N 1.31093 * 121.75494 * 0.02562 * 15 14 13 17 17 C 1.33685 * 121.31459 * 359.95004 * 16 15 14 18 18 C 1.36082 * 119.46375 * 269.72227 * 9 8 6 19 19 C 1.47021 * 108.70691 * 335.55266 * 5 4 2 20 20 C 1.54322 * 107.26600 * 1.28623 * 19 5 4 21 21 H 1.09006 * 110.71719 * 140.73140 * 20 19 5 22 22 N 1.46493 * 110.72342 * 263.82534 * 20 19 5 23 23 C 1.36934 * 120.00244 * 273.55207 * 22 20 19 24 24 H 1.08001 * 119.99945 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99961 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00345 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00086 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46981 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47251 * 119.99793 * 27 25 23 30 30 H 1.48498 * 109.47353 * 240.00022 * 27 25 23 31 31 H 1.08994 * 109.47011 * 183.88120 * 1 2 3 32 32 H 1.08999 * 109.46593 * 303.87674 * 1 2 3 33 33 H 1.08997 * 109.47013 * 63.87706 * 1 2 3 34 34 H 1.08999 * 110.50219 * 36.44672 * 4 2 1 35 35 H 1.08997 * 110.34670 * 274.05284 * 4 2 1 36 36 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 37 37 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 38 38 H 1.07999 * 119.56601 * 359.95572 * 10 9 8 39 39 H 1.07998 * 120.19800 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.92915 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.03281 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.12734 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.12609 * 0.02562 * 18 9 8 44 44 H 1.08997 * 109.87932 * 120.69869 * 19 5 4 45 45 H 1.08992 * 109.88291 * 241.71841 * 19 5 4 46 46 H 0.97009 * 120.00037 * 93.54944 * 22 20 19 47 47 H 0.97004 * 120.00313 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4281 -1.2422 0.7723 6 6 4.4491 -1.5604 1.5926 7 8 4.3028 -1.4991 2.7950 8 6 5.7726 -1.9923 1.0157 9 6 6.7364 -2.2879 2.1359 10 6 6.8040 -3.5775 2.6596 11 6 7.6646 -3.8764 3.6713 12 6 8.4959 -2.8726 4.1943 13 6 9.3995 -3.1407 5.2398 14 6 10.1772 -2.1156 5.6981 15 6 10.0621 -0.8484 5.1306 16 7 9.2194 -0.6023 4.1571 17 6 8.4300 -1.5611 3.6624 18 6 7.5306 -1.2925 2.6158 19 6 3.4679 -1.2730 -0.6971 20 6 2.0861 -0.8074 -1.2026 21 1 2.1913 -0.1717 -2.0818 22 7 1.2273 -1.9572 -1.4965 23 6 1.2819 -2.5559 -2.7269 24 1 1.9578 -2.1800 -3.4807 25 6 0.4685 -3.6457 -3.0051 26 7 -0.3550 -4.1040 -2.0863 27 14 0.5423 -4.4619 -4.6838 28 1 1.5408 -3.7617 -5.5311 29 1 0.9375 -5.8846 -4.5255 30 1 -0.7929 -4.3879 -5.3295 31 1 -0.3633 -1.0253 0.0696 32 1 -0.3632 0.5728 0.8532 33 1 -0.3633 0.4525 -0.9227 34 1 1.4539 -1.6784 1.3985 35 1 2.1525 -0.1803 2.0857 36 1 5.6307 -2.8887 0.4120 37 1 6.1749 -1.1941 0.3919 38 1 6.1651 -4.3500 2.2578 39 1 7.7077 -4.8794 4.0692 40 1 9.4759 -4.1293 5.6677 41 1 10.8812 -2.2874 6.4989 42 1 10.6836 -0.0473 5.5027 43 1 7.4685 -0.2994 2.1958 44 1 4.2425 -0.5981 -1.0611 45 1 3.6685 -2.2875 -1.0413 46 1 0.6199 -2.2946 -0.8195 47 1 -0.9237 -4.8654 -2.2808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054791064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:12 Heat of formation + Delta-G solvation = 33.243480 kcal Electronic energy + Delta-G solvation = -28385.163259 eV Core-core repulsion = 24532.837033 eV Total energy + Delta-G solvation = -3852.326226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.00580 -39.83053 -38.03606 -36.99252 -33.95653 -33.81338 -32.60015 -31.92043 -30.51285 -30.26523 -28.31927 -27.69870 -25.81238 -24.22428 -23.89836 -23.03443 -22.28092 -21.89750 -19.31447 -19.04966 -17.97266 -17.58852 -17.15378 -16.96392 -16.62455 -15.82148 -15.20955 -14.75989 -14.64484 -14.53571 -14.48535 -14.24211 -14.06172 -13.71860 -13.23802 -13.16458 -13.01842 -12.98341 -12.72405 -12.20893 -12.09478 -11.87310 -11.69714 -11.63456 -11.52591 -11.48540 -11.14028 -10.97501 -10.79992 -10.70407 -10.49462 -10.26606 -9.94757 -9.73212 -9.67494 -9.62520 -9.05808 -8.80144 -8.36345 -8.25430 -7.10516 -5.87896 -3.18024 0.25143 0.65614 1.85890 2.72100 2.88536 3.36192 3.36826 3.42272 3.44579 3.98489 4.08489 4.39930 4.49013 4.50544 4.63984 4.68803 4.74862 4.86489 4.93399 5.13310 5.15980 5.18162 5.24931 5.32305 5.38387 5.48454 5.50589 5.61445 5.64473 5.75799 5.76510 5.80945 5.91882 5.94522 5.95012 6.16370 6.21554 6.23869 6.32717 6.33696 6.35528 6.41970 6.50512 6.61239 6.70539 6.72984 6.90515 7.60500 7.74638 7.87412 8.29899 8.43137 9.42026 9.96950 10.31606 11.34184 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002339 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.464052 B =11967.534082 C =12866.696146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.528 3.472 7 O -0.547 6.547 8 C -0.103 4.103 9 C -0.037 4.037 10 C -0.094 4.094 11 C -0.100 4.100 12 C -0.103 4.103 13 C -0.057 4.057 14 C -0.182 4.182 15 C 0.125 3.875 16 N -0.473 5.473 17 C 0.130 3.870 18 C -0.082 4.082 19 C 0.069 3.931 20 C 0.172 3.828 21 H 0.070 0.930 22 N -0.712 5.712 23 C -0.246 4.246 24 H 0.073 0.927 25 C -0.009 4.009 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.133 0.867 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.813 4.793 11.490 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.340 5.340 6 C 0.316 3.684 7 O -0.426 6.426 8 C -0.143 4.143 9 C -0.039 4.039 10 C -0.112 4.112 11 C -0.118 4.118 12 C -0.105 4.105 13 C -0.083 4.083 14 C -0.202 4.202 15 C -0.048 4.048 16 N -0.181 5.181 17 C 0.009 3.991 18 C -0.101 4.101 19 C -0.057 4.057 20 C 0.060 3.940 21 H 0.088 0.912 22 N -0.354 5.354 23 C -0.377 4.377 24 H 0.091 0.909 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.151 0.849 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.655 5.556 11.535 21.809 hybrid contribution -0.086 -1.597 -0.347 1.637 sum 17.568 3.959 11.188 21.201 Atomic orbital electron populations 1.21547 0.93408 1.02965 1.00983 1.22650 0.96942 0.98433 0.95335 0.90304 1.22294 0.82836 0.98319 0.97237 1.48450 1.11840 1.65864 1.07842 1.19986 0.84623 0.77537 0.86230 1.90702 1.83300 1.54000 1.14562 1.20729 0.92070 1.04489 0.96967 1.19106 0.95041 0.93430 0.96330 1.20851 0.97793 0.96283 0.96268 1.20911 0.95761 0.98469 0.96693 1.18845 0.98668 0.94954 0.98045 1.21470 0.93162 0.99699 0.93946 1.21844 1.01629 0.94421 1.02280 1.22926 0.94433 0.95913 0.91499 1.68026 1.05080 1.34007 1.10989 1.18791 0.95529 0.88867 0.95949 1.20574 0.94743 0.99396 0.95347 1.23307 1.01603 1.02213 0.78541 1.21203 0.88310 0.89857 0.94672 0.91190 1.42471 1.45454 1.32748 1.14692 1.19265 1.18566 1.09312 0.90538 0.90926 1.24756 0.98973 0.98914 0.97916 1.69666 1.27378 1.27461 1.33108 0.86138 0.77276 0.79204 0.83637 1.20486 1.21880 1.21836 0.91211 0.93668 0.92090 0.91260 0.91356 0.87409 0.87767 0.85303 0.85146 0.84526 0.84706 0.82588 0.84864 0.92652 0.90396 0.77731 0.93417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.85 37.16 0.33 -1.70 16 2 C -0.11 -1.74 3.53 -88.35 -0.31 -2.05 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 1.90 6.36 -2.41 -0.02 1.88 16 5 N -0.61 -9.91 3.32 -170.39 -0.57 -10.48 16 6 C 0.53 8.68 7.84 -10.98 -0.09 8.59 16 7 O -0.55 -10.81 16.29 5.56 0.09 -10.72 16 8 C -0.10 -1.30 4.99 -29.03 -0.14 -1.44 16 9 C -0.04 -0.48 4.34 -104.98 -0.46 -0.94 16 10 C -0.09 -1.15 9.59 -39.92 -0.38 -1.53 16 11 C -0.10 -1.11 9.78 -39.51 -0.39 -1.49 16 12 C -0.10 -1.23 5.74 -106.80 -0.61 -1.85 16 13 C -0.06 -0.52 9.90 -39.22 -0.39 -0.91 16 14 C -0.18 -1.47 10.03 -39.78 -0.40 -1.87 16 15 C 0.13 1.21 11.14 -17.46 -0.19 1.02 16 16 N -0.47 -6.20 10.34 -10.98 -0.11 -6.31 16 17 C 0.13 1.77 6.60 -84.86 -0.56 1.21 16 18 C -0.08 -1.11 9.58 -39.47 -0.38 -1.49 16 19 C 0.07 1.10 6.22 -3.07 -0.02 1.08 16 20 C 0.17 3.02 3.37 -66.10 -0.22 2.80 16 21 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 22 N -0.71 -16.03 4.61 -51.65 -0.24 -16.27 16 23 C -0.25 -6.24 9.98 -15.06 -0.15 -6.39 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 27 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 35 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 36 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 37 H 0.10 1.09 8.06 -51.93 -0.42 0.68 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 46 H 0.39 9.44 6.10 -40.82 -0.25 9.19 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 389.70 15.07 5.87 5.87 Total: -1.00 -32.59 389.70 -10.59 -43.18 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.86 Total: 9.81 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -4.47 Total: -5.42 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.19 Total: -58.97 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.59 -10.59 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.428 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds