Wall clock time and date at job start Tue Mar 31 2020 22:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 110.88688 * 2 1 4 4 C 1.55121 * 110.94048 * 124.07936 * 2 1 3 5 5 N 1.47426 * 104.71990 * 155.28770 * 4 2 1 6 6 C 1.34780 * 125.64500 * 155.82117 * 5 4 2 7 7 O 1.21280 * 120.00423 * 359.71076 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.71753 * 6 5 4 9 9 C 1.50703 * 109.47064 * 179.97438 * 8 6 5 10 10 C 1.39354 * 119.46735 * 89.99969 * 9 8 6 11 11 C 1.36136 * 120.87080 * 179.97438 * 10 9 8 12 12 C 1.40433 * 119.60956 * 359.97438 * 11 10 9 13 13 C 1.40766 * 121.37038 * 180.02562 * 12 11 10 14 14 C 1.36582 * 118.15084 * 179.97438 * 13 12 11 15 15 C 1.39322 * 119.93152 * 359.97438 * 14 13 12 16 16 N 1.31093 * 121.75494 * 0.02562 * 15 14 13 17 17 C 1.33685 * 121.31459 * 359.95004 * 16 15 14 18 18 C 1.36082 * 119.46375 * 269.72227 * 9 8 6 19 19 C 1.47021 * 108.70691 * 335.55266 * 5 4 2 20 20 C 1.54322 * 107.26600 * 1.28623 * 19 5 4 21 21 H 1.09006 * 110.71719 * 140.73140 * 20 19 5 22 22 N 1.46493 * 110.72342 * 263.82534 * 20 19 5 23 23 C 1.36934 * 120.00244 * 273.55207 * 22 20 19 24 24 H 1.08001 * 119.99945 * 359.97438 * 23 22 20 25 25 C 1.38811 * 119.99961 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00345 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00086 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46981 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47251 * 119.99793 * 27 25 23 30 30 H 1.48498 * 109.47353 * 240.00022 * 27 25 23 31 31 H 1.08994 * 109.47011 * 183.88120 * 1 2 3 32 32 H 1.08999 * 109.46593 * 303.87674 * 1 2 3 33 33 H 1.08997 * 109.47013 * 63.87706 * 1 2 3 34 34 H 1.08999 * 110.50219 * 36.44672 * 4 2 1 35 35 H 1.08997 * 110.34670 * 274.05284 * 4 2 1 36 36 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 37 37 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 38 38 H 1.07999 * 119.56601 * 359.95572 * 10 9 8 39 39 H 1.07998 * 120.19800 * 179.97438 * 11 10 9 40 40 H 1.08001 * 120.92915 * 359.97438 * 13 12 11 41 41 H 1.08003 * 120.03281 * 180.02562 * 14 13 12 42 42 H 1.08001 * 119.12734 * 180.02562 * 15 14 13 43 43 H 1.07999 * 120.12609 * 0.02562 * 18 9 8 44 44 H 1.08997 * 109.87932 * 120.69869 * 19 5 4 45 45 H 1.08992 * 109.88291 * 241.71841 * 19 5 4 46 46 H 0.97009 * 120.00037 * 93.54944 * 22 20 19 47 47 H 0.97004 * 120.00313 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4281 -1.2422 0.7723 6 6 4.4491 -1.5604 1.5926 7 8 4.3028 -1.4991 2.7950 8 6 5.7726 -1.9923 1.0157 9 6 6.7364 -2.2879 2.1359 10 6 6.8040 -3.5775 2.6596 11 6 7.6646 -3.8764 3.6713 12 6 8.4959 -2.8726 4.1943 13 6 9.3995 -3.1407 5.2398 14 6 10.1772 -2.1156 5.6981 15 6 10.0621 -0.8484 5.1306 16 7 9.2194 -0.6023 4.1571 17 6 8.4300 -1.5611 3.6624 18 6 7.5306 -1.2925 2.6158 19 6 3.4679 -1.2730 -0.6971 20 6 2.0861 -0.8074 -1.2026 21 1 2.1913 -0.1717 -2.0818 22 7 1.2273 -1.9572 -1.4965 23 6 1.2819 -2.5559 -2.7269 24 1 1.9578 -2.1800 -3.4807 25 6 0.4685 -3.6457 -3.0051 26 7 -0.3550 -4.1040 -2.0863 27 14 0.5423 -4.4619 -4.6838 28 1 1.5408 -3.7617 -5.5311 29 1 0.9375 -5.8846 -4.5255 30 1 -0.7929 -4.3879 -5.3295 31 1 -0.3633 -1.0253 0.0696 32 1 -0.3632 0.5728 0.8532 33 1 -0.3633 0.4525 -0.9227 34 1 1.4539 -1.6784 1.3985 35 1 2.1525 -0.1803 2.0857 36 1 5.6307 -2.8887 0.4120 37 1 6.1749 -1.1941 0.3919 38 1 6.1651 -4.3500 2.2578 39 1 7.7077 -4.8794 4.0692 40 1 9.4759 -4.1293 5.6677 41 1 10.8812 -2.2874 6.4989 42 1 10.6836 -0.0473 5.5027 43 1 7.4685 -0.2994 2.1958 44 1 4.2425 -0.5981 -1.0611 45 1 3.6685 -2.2875 -1.0413 46 1 0.6199 -2.2946 -0.8195 47 1 -0.9237 -4.8654 -2.2808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054791064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:11 Heat of formation + Delta-G solvation = 14.193369 kcal Electronic energy + Delta-G solvation = -28385.989334 eV Core-core repulsion = 24532.837033 eV Total energy + Delta-G solvation = -3853.152301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.85478 -41.09631 -39.25830 -38.03241 -35.67349 -34.64696 -33.98850 -32.92940 -32.17848 -31.09911 -29.41449 -29.15637 -27.00632 -25.75546 -25.01826 -24.03806 -23.30811 -22.98640 -20.70658 -20.28962 -19.38617 -18.80343 -18.02930 -17.96275 -17.76616 -17.20221 -16.53103 -16.24656 -15.89413 -15.51274 -15.42583 -15.33123 -15.16763 -14.99827 -14.62643 -14.46737 -14.10445 -13.91192 -13.84898 -13.52271 -13.37209 -13.05068 -12.99226 -12.86399 -12.79690 -12.61849 -12.49006 -12.33779 -12.28131 -12.05102 -11.96086 -11.51072 -11.44853 -11.35690 -11.05575 -10.87325 -10.45443 -9.66250 -9.62051 -9.21895 -8.98702 -7.90420 -5.18391 -0.54087 -0.16979 1.03237 1.50480 1.51874 1.60053 1.60623 1.82893 2.19994 2.59181 3.12331 3.28953 3.41814 3.49292 3.60516 3.67644 3.88689 3.89958 3.92697 3.96258 4.03084 4.08577 4.10540 4.18543 4.27782 4.43921 4.51341 4.54172 4.60222 4.63698 4.66110 4.74684 4.84951 4.88905 4.97760 5.01607 5.02613 5.05620 5.13709 5.21902 5.28675 5.35544 5.38585 5.49277 5.55232 5.60838 5.61525 5.89490 6.31143 6.57477 6.96296 7.13325 7.38747 8.13456 8.35910 9.33079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.002339 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.464052 B =11967.534082 C =12866.696146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 H 0.109 0.891 4 C 0.115 3.885 5 N -0.609 5.609 6 C 0.525 3.475 7 O -0.585 6.585 8 C -0.094 4.094 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.094 4.094 12 C -0.124 4.124 13 C -0.059 4.059 14 C -0.174 4.174 15 C 0.122 3.878 16 N -0.512 5.512 17 C 0.102 3.898 18 C -0.102 4.102 19 C 0.079 3.921 20 C 0.161 3.839 21 H 0.083 0.917 22 N -0.724 5.724 23 C -0.230 4.230 24 H 0.085 0.915 25 C -0.075 4.075 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.262 1.262 29 H -0.301 1.301 30 H -0.300 1.300 31 H 0.037 0.963 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.159 0.841 40 H 0.170 0.830 41 H 0.175 0.825 42 H 0.187 0.813 43 H 0.130 0.870 44 H 0.093 0.907 45 H 0.060 0.940 46 H 0.374 0.626 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.480 5.507 11.954 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.127 0.873 4 C -0.008 4.008 5 N -0.341 5.341 6 C 0.315 3.685 7 O -0.466 6.466 8 C -0.133 4.133 9 C -0.049 4.049 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.126 4.126 13 C -0.085 4.085 14 C -0.194 4.194 15 C -0.050 4.050 16 N -0.221 5.221 17 C -0.018 4.018 18 C -0.121 4.121 19 C -0.046 4.046 20 C 0.051 3.949 21 H 0.101 0.899 22 N -0.364 5.364 23 C -0.362 4.362 24 H 0.102 0.898 25 C -0.268 4.268 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.186 1.186 29 H -0.228 1.228 30 H -0.228 1.228 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.153 0.847 39 H 0.177 0.823 40 H 0.187 0.813 41 H 0.193 0.807 42 H 0.204 0.796 43 H 0.147 0.853 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 20.369 6.316 11.971 24.456 hybrid contribution -0.782 -1.717 -0.331 1.916 sum 19.586 4.599 11.639 23.243 Atomic orbital electron populations 1.21475 0.93654 1.01290 1.01938 1.22612 0.96632 0.99278 0.93300 0.87251 1.22243 0.82871 0.97607 0.98084 1.48551 1.11740 1.65707 1.08121 1.20637 0.85601 0.76531 0.85759 1.90677 1.84091 1.55575 1.16288 1.20735 0.89858 1.05618 0.97120 1.19193 0.95159 0.93879 0.96717 1.21048 0.98924 0.96284 0.97380 1.21268 0.94575 0.99617 0.95744 1.19163 0.99773 0.94485 0.99182 1.21909 0.92133 1.01600 0.92867 1.22288 1.01424 0.93256 1.02389 1.23616 0.93392 0.97761 0.90223 1.68027 1.06564 1.34598 1.12897 1.19031 0.96167 0.90060 0.96565 1.20665 0.95730 0.99420 0.96243 1.23128 1.01299 1.02065 0.78104 1.21491 0.88493 0.88725 0.96193 0.89896 1.42640 1.46168 1.33968 1.13597 1.19684 1.16855 1.08196 0.91461 0.89751 1.25481 0.99825 1.00468 1.00977 1.69825 1.29057 1.28233 1.34981 0.85171 0.76988 0.77810 0.80375 1.18563 1.22836 1.22758 0.94394 0.91262 0.92285 0.93812 0.90969 0.86250 0.85462 0.84673 0.82296 0.81289 0.80716 0.79615 0.85251 0.88916 0.92132 0.79195 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.85 71.98 0.64 -3.18 16 2 C -0.10 -2.86 3.53 -9.32 -0.03 -2.90 16 3 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 4 C 0.11 3.75 6.36 86.93 0.55 4.30 16 5 N -0.61 -19.48 3.32 -811.38 -2.70 -22.17 16 6 C 0.52 17.18 7.84 87.66 0.69 17.86 16 7 O -0.59 -23.59 16.29 -3.03 -0.05 -23.64 16 8 C -0.09 -2.32 4.99 29.10 0.15 -2.18 16 9 C -0.05 -1.25 4.34 -20.10 -0.09 -1.34 16 10 C -0.12 -2.90 9.59 22.05 0.21 -2.68 16 11 C -0.09 -1.99 9.78 22.32 0.22 -1.77 16 12 C -0.12 -2.84 5.74 -21.28 -0.12 -2.97 16 13 C -0.06 -0.92 9.90 22.50 0.22 -0.70 16 14 C -0.17 -2.25 10.03 22.14 0.22 -2.03 16 15 C 0.12 2.12 11.14 85.06 0.95 3.07 16 16 N -0.51 -13.25 10.34 -188.64 -1.95 -15.20 16 17 C 0.10 2.81 6.60 40.29 0.27 3.07 16 18 C -0.10 -2.85 9.58 22.34 0.21 -2.63 16 19 C 0.08 2.38 6.22 86.73 0.54 2.91 16 20 C 0.16 5.43 3.37 46.18 0.16 5.58 16 21 H 0.08 2.63 8.12 -2.38 -0.02 2.61 16 22 N -0.72 -32.63 4.61 -317.34 -1.46 -34.09 16 23 C -0.23 -11.58 9.98 84.03 0.84 -10.74 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 25 C -0.08 -4.09 5.50 84.86 0.47 -3.62 16 26 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 27 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 28 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 30 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 31 H 0.04 1.39 6.38 -2.39 -0.02 1.38 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.65 7.99 -2.39 -0.02 1.63 16 35 H 0.07 2.30 8.03 -2.39 -0.02 2.28 16 36 H 0.12 2.64 8.08 -2.39 -0.02 2.62 16 37 H 0.13 2.48 8.06 -2.39 -0.02 2.47 16 38 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.13 3.46 8.06 -2.91 -0.02 3.44 16 44 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 2.06 8.05 -2.39 -0.02 2.04 16 46 H 0.37 18.81 6.10 -92.70 -0.57 18.25 16 47 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -73.76 389.70 2.64 -71.12 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.41 Total: 34.83 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.08 Total: 0.06 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.83 Total: -128.52 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.76 2.64 -71.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054791064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.312 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds