Wall clock time and date at job start Tue Mar 31 2020 22:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.63900 * 2 1 4 4 C 1.54332 * 111.00192 * 236.92429 * 2 1 3 5 5 N 1.47029 * 107.26072 * 219.60190 * 4 2 1 6 6 C 1.34778 * 125.64452 * 178.84997 * 5 4 2 7 7 O 1.21281 * 120.00079 * 359.71222 * 6 5 4 8 8 C 1.50695 * 119.99853 * 179.71558 * 6 5 4 9 9 C 1.50707 * 109.47211 * 180.02562 * 8 6 5 10 10 C 1.36250 * 120.25765 * 264.99943 * 9 8 6 11 11 C 1.39335 * 121.01659 * 179.97438 * 10 9 8 12 12 C 1.36203 * 121.08659 * 359.97438 * 11 10 9 13 13 C 1.40330 * 119.51631 * 359.97438 * 12 11 10 14 14 C 1.40446 * 122.08756 * 180.02562 * 13 12 11 15 15 N 1.31234 * 119.87920 * 179.97438 * 14 13 12 16 16 C 1.32615 * 122.78885 * 359.97438 * 15 14 13 17 17 C 1.36173 * 121.87531 * 359.97438 * 16 15 14 18 18 C 1.40189 * 120.26201 * 84.99358 * 9 8 6 19 19 C 1.47415 * 108.70544 * 358.58459 * 5 4 2 20 20 C 1.54913 * 104.83623 * 24.35534 * 19 5 4 21 21 H 1.08998 * 111.00794 * 204.87824 * 20 19 5 22 22 N 1.46504 * 110.99986 * 81.06237 * 20 19 5 23 23 C 1.36939 * 119.99659 * 86.46010 * 22 20 19 24 24 H 1.08007 * 119.99981 * 359.97438 * 23 22 20 25 25 C 1.38806 * 119.99890 * 179.97438 * 23 22 20 26 26 N 1.31623 * 120.00239 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99934 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47213 * 90.00178 * 27 25 23 29 29 H 1.48500 * 109.46978 * 210.00111 * 27 25 23 30 30 H 1.48505 * 109.47093 * 329.99934 * 27 25 23 31 31 H 1.09002 * 109.47320 * 296.85695 * 1 2 3 32 32 H 1.08997 * 109.46947 * 56.86106 * 1 2 3 33 33 H 1.08998 * 109.47113 * 176.86148 * 1 2 3 34 34 H 1.08988 * 109.99246 * 100.12794 * 4 2 1 35 35 H 1.08998 * 109.77831 * 338.95302 * 4 2 1 36 36 H 1.09000 * 109.47241 * 60.00211 * 8 6 5 37 37 H 1.09005 * 109.47318 * 299.99891 * 8 6 5 38 38 H 1.08005 * 119.48935 * 0.27709 * 10 9 8 39 39 H 1.08001 * 119.45306 * 180.02562 * 11 10 9 40 40 H 1.08001 * 120.24016 * 179.97438 * 12 11 10 41 41 H 1.08000 * 120.05700 * 359.95536 * 14 13 12 42 42 H 1.07991 * 119.06124 * 179.97438 * 16 15 14 43 43 H 1.07994 * 120.66303 * 179.97438 * 17 16 15 44 44 H 1.09000 * 110.37081 * 143.19526 * 19 5 4 45 45 H 1.09002 * 110.36743 * 265.40922 * 19 5 4 46 46 H 0.96991 * 120.00410 * 266.45342 * 22 20 19 47 47 H 0.96997 * 120.00138 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0831 -0.7863 -1.2073 5 7 3.2494 -1.5470 -0.7352 6 6 4.0005 -2.3785 -1.4843 7 8 3.7297 -2.5526 -2.6536 8 6 5.1766 -3.0918 -0.8689 9 6 5.8431 -3.9530 -1.9107 10 6 5.5185 -5.2716 -2.0216 11 6 6.1244 -6.0821 -2.9793 12 6 7.0591 -5.5819 -3.8345 13 6 7.4183 -4.2279 -3.7509 14 6 8.3748 -3.6557 -4.6055 15 7 8.6776 -2.3841 -4.4895 16 6 8.1151 -1.5912 -3.5876 17 6 7.1763 -2.0487 -2.7136 18 6 6.8018 -3.4036 -2.7735 19 6 3.4652 -1.2447 0.6914 20 6 2.0789 -0.7933 1.2152 21 1 2.1820 -0.1495 2.0887 22 7 1.2294 -1.9486 1.5152 23 6 1.3001 -2.5498 2.7435 24 1 1.9824 -2.1726 3.4910 25 6 0.4948 -3.6441 3.0279 26 7 -0.3363 -4.1042 2.1168 27 14 0.5917 -4.4647 4.7032 28 1 -0.3801 -3.8239 5.6252 29 1 0.2677 -5.9075 4.5671 30 1 1.9647 -4.3151 5.2490 31 1 -0.3634 0.4643 0.9168 32 1 -0.3633 0.5618 -0.8605 33 1 -0.3633 -1.0261 -0.0563 34 1 2.3848 -0.0961 -1.9950 35 1 1.3217 -1.4701 -1.5823 36 1 4.8318 -3.7178 -0.0459 37 1 5.8904 -2.3586 -0.4934 38 1 4.7765 -5.6939 -1.3600 39 1 5.8477 -7.1240 -3.0452 40 1 7.5204 -6.2226 -4.5714 41 1 8.8605 -4.2613 -5.3564 42 1 8.4099 -0.5532 -3.5449 43 1 6.7311 -1.3857 -1.9866 44 1 3.7992 -2.1363 1.2219 45 1 4.1944 -0.4422 0.8030 46 1 0.6169 -2.2876 0.8438 47 1 -0.8992 -4.8686 2.3157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054793506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:47 Heat of formation + Delta-G solvation = 33.494397 kcal Electronic energy + Delta-G solvation = -29220.077081 eV Core-core repulsion = 25367.761736 eV Total energy + Delta-G solvation = -3852.315345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.05127 -39.72714 -37.90995 -37.16906 -33.92435 -33.89678 -32.46023 -31.38663 -30.67609 -30.45629 -28.12334 -27.73324 -25.67543 -24.24344 -23.93286 -23.65300 -22.23120 -21.21382 -19.29475 -18.94400 -18.11260 -17.54301 -17.12506 -16.81346 -16.59436 -15.96019 -15.16678 -15.02066 -14.65559 -14.44355 -14.34903 -14.13326 -13.87103 -13.72745 -13.42164 -13.07618 -13.03459 -12.78620 -12.64220 -12.29866 -12.12617 -11.99639 -11.89996 -11.65270 -11.53692 -11.18451 -11.08279 -10.97793 -10.78227 -10.51766 -10.33567 -10.21354 -9.98899 -9.72309 -9.59344 -9.58065 -9.11132 -9.07540 -8.25765 -8.07715 -7.09285 -5.88805 -3.19069 0.27557 0.85890 1.82876 2.91220 2.96564 3.34878 3.38224 3.40387 3.42578 4.02129 4.27223 4.38442 4.47292 4.61769 4.70905 4.75032 4.79879 4.93253 5.05650 5.10629 5.11944 5.22562 5.28174 5.28913 5.45018 5.49664 5.56962 5.59084 5.71593 5.72987 5.73711 5.87654 5.91345 5.95565 5.97097 6.13436 6.16212 6.29347 6.31198 6.32515 6.43661 6.47259 6.53362 6.57774 6.71949 6.77352 6.87221 7.57947 7.86870 7.88354 8.28854 8.47444 9.40800 9.96246 10.30842 11.33065 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003128 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.010414 B = 8949.171271 C =10206.969742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.118 3.882 5 N -0.602 5.602 6 C 0.531 3.469 7 O -0.545 6.545 8 C -0.101 4.101 9 C -0.050 4.050 10 C -0.087 4.087 11 C -0.110 4.110 12 C -0.095 4.095 13 C -0.111 4.111 14 C 0.142 3.858 15 N -0.492 5.492 16 C 0.070 3.930 17 C -0.146 4.146 18 C -0.008 4.008 19 C 0.066 3.934 20 C 0.172 3.828 21 H 0.071 0.929 22 N -0.710 5.710 23 C -0.248 4.248 24 H 0.072 0.928 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.161 0.839 42 H 0.151 0.849 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.224 3.081 -8.579 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.005 4.005 5 N -0.335 5.335 6 C 0.319 3.681 7 O -0.424 6.424 8 C -0.141 4.141 9 C -0.050 4.050 10 C -0.106 4.106 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.113 4.113 14 C -0.029 4.029 15 N -0.200 5.200 16 C -0.072 4.072 17 C -0.166 4.166 18 C -0.013 4.013 19 C -0.060 4.060 20 C 0.059 3.941 21 H 0.089 0.911 22 N -0.351 5.351 23 C -0.379 4.379 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.074 0.926 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.729 3.375 -9.551 17.876 hybrid contribution -0.924 -1.021 1.397 1.961 sum 13.805 2.354 -8.154 16.205 Atomic orbital electron populations 1.21599 0.93463 1.02976 1.00935 1.22490 0.97087 0.98532 0.95170 0.90286 1.21929 0.87865 0.94293 0.96401 1.48317 1.29482 1.43915 1.11790 1.19930 0.83414 0.78807 0.85962 1.90699 1.71389 1.63786 1.16485 1.20659 0.96114 0.99431 0.97898 1.19100 0.95605 0.94090 0.96238 1.20944 0.98342 0.93267 0.98033 1.20903 0.96444 1.00230 0.95273 1.20924 0.97815 0.93576 0.99162 1.18981 0.99347 0.95169 0.97832 1.23139 0.92828 0.91138 0.95828 1.67381 1.26196 1.05570 1.20839 1.22095 0.93957 0.99525 0.91668 1.21887 0.98672 0.95025 1.00979 1.17941 0.95197 0.93506 0.94627 1.23439 1.01326 1.00737 0.80495 1.21347 0.88553 0.89912 0.94247 0.91144 1.42392 1.45369 1.32259 1.15051 1.19210 1.18672 1.09143 0.90854 0.91011 1.24752 0.98938 0.98847 0.97899 1.69661 1.27232 1.27222 1.33378 0.86218 0.77591 0.78749 0.83738 1.21643 1.21791 1.20702 0.92084 0.93676 0.91275 0.92435 0.91542 0.87117 0.88142 0.85257 0.85424 0.85050 0.82169 0.83213 0.84918 0.90136 0.92606 0.77703 0.93354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.73 37.16 0.32 -1.70 16 2 C -0.11 -1.68 3.40 -88.78 -0.30 -1.98 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 4 C 0.12 1.90 6.47 -3.06 -0.02 1.88 16 5 N -0.60 -9.95 3.33 -170.52 -0.57 -10.51 16 6 C 0.53 9.11 7.84 -10.99 -0.09 9.02 16 7 O -0.55 -11.21 16.36 5.56 0.09 -11.11 16 8 C -0.10 -1.39 4.28 -29.03 -0.12 -1.52 16 9 C -0.05 -0.70 4.38 -104.60 -0.46 -1.16 16 10 C -0.09 -1.14 9.58 -39.89 -0.38 -1.52 16 11 C -0.11 -1.23 9.94 -39.91 -0.40 -1.62 16 12 C -0.09 -1.00 9.81 -39.53 -0.39 -1.39 16 13 C -0.11 -1.39 5.74 -106.86 -0.61 -2.00 16 14 C 0.14 1.62 11.05 -16.98 -0.19 1.43 16 15 N -0.49 -6.32 10.30 -13.15 -0.14 -6.46 16 16 C 0.07 0.85 11.07 -17.96 -0.20 0.65 16 17 C -0.15 -1.86 9.36 -39.39 -0.37 -2.23 16 18 C -0.01 -0.10 5.75 -106.82 -0.61 -0.72 16 19 C 0.07 1.02 6.38 -2.53 -0.02 1.01 16 20 C 0.17 2.97 3.44 -65.78 -0.23 2.75 16 21 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 22 N -0.71 -15.96 4.74 -51.34 -0.24 -16.21 16 23 C -0.25 -6.26 9.98 -15.06 -0.15 -6.41 16 24 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 26 N -0.93 -26.63 13.06 55.49 0.72 -25.91 16 27 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 34 H 0.06 0.87 8.14 -51.94 -0.42 0.44 16 35 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 36 H 0.11 1.49 7.75 -51.93 -0.40 1.08 16 37 H 0.10 1.14 6.80 -51.93 -0.35 0.79 16 38 H 0.13 1.62 8.05 -52.48 -0.42 1.19 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.16 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.13 1.51 6.65 -52.49 -0.35 1.16 16 44 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.39 9.57 6.09 -40.82 -0.25 9.32 16 47 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -32.47 385.54 -10.32 -42.79 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -6.67 Total: 11.28 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.30 Total: -5.81 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.22 Total: -59.08 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.47 -10.32 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.282 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds