Wall clock time and date at job start Tue Mar 31 2020 22:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.89022 * 2 1 4 4 C 1.55136 * 110.90717 * 124.09594 * 2 1 3 5 5 N 1.47422 * 104.72246 * 155.27034 * 4 2 1 6 6 C 1.34773 * 125.64458 * 155.81445 * 5 4 2 7 7 O 1.21283 * 120.00360 * 359.44801 * 6 5 4 8 8 C 1.50706 * 120.00081 * 179.72077 * 6 5 4 9 9 C 1.50696 * 109.47259 * 179.72770 * 8 6 5 10 10 C 1.36251 * 120.26006 * 264.99865 * 9 8 6 11 11 C 1.39337 * 121.02045 * 180.02562 * 10 9 8 12 12 C 1.36203 * 121.08367 * 359.97438 * 11 10 9 13 13 C 1.40333 * 119.51835 * 359.97438 * 12 11 10 14 14 C 1.40438 * 122.08138 * 180.02562 * 13 12 11 15 15 N 1.31249 * 119.87636 * 179.20207 * 14 13 12 16 16 C 1.32612 * 122.78022 * 0.87818 * 15 14 13 17 17 C 1.36179 * 121.88138 * 359.39018 * 16 15 14 18 18 C 1.40192 * 120.26276 * 84.72319 * 9 8 6 19 19 C 1.47014 * 108.70374 * 335.55682 * 5 4 2 20 20 C 1.54322 * 107.27676 * 1.28395 * 19 5 4 21 21 H 1.08995 * 110.72455 * 140.55753 * 20 19 5 22 22 N 1.46503 * 110.72033 * 263.83610 * 20 19 5 23 23 C 1.36942 * 119.99432 * 273.54057 * 22 20 19 24 24 H 1.08000 * 120.00089 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99633 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00257 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99696 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47083 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.46939 * 119.99936 * 27 25 23 30 30 H 1.48498 * 109.46779 * 239.99831 * 27 25 23 31 31 H 1.09003 * 109.47183 * 183.88295 * 1 2 3 32 32 H 1.08997 * 109.46860 * 303.87664 * 1 2 3 33 33 H 1.09000 * 109.47081 * 63.87924 * 1 2 3 34 34 H 1.09003 * 110.49305 * 36.43270 * 4 2 1 35 35 H 1.08994 * 110.34307 * 274.03991 * 4 2 1 36 36 H 1.09001 * 109.46564 * 299.73030 * 8 6 5 37 37 H 1.08998 * 109.47012 * 59.72084 * 8 6 5 38 38 H 1.07999 * 119.48827 * 359.97438 * 10 9 8 39 39 H 1.07997 * 119.45650 * 179.97438 * 11 10 9 40 40 H 1.07996 * 120.23971 * 179.97438 * 12 11 10 41 41 H 1.07996 * 120.06428 * 0.02562 * 14 13 12 42 42 H 1.07999 * 119.06516 * 179.41461 * 16 15 14 43 43 H 1.07999 * 120.66349 * 180.02562 * 17 16 15 44 44 H 1.09004 * 109.88637 * 120.70541 * 19 5 4 45 45 H 1.09005 * 109.88390 * 241.71335 * 19 5 4 46 46 H 0.96993 * 120.00310 * 93.54256 * 22 20 19 47 47 H 0.97004 * 120.00287 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8124 1.2001 5 7 3.4271 -1.2435 0.7728 6 6 4.4476 -1.5623 1.5934 7 8 4.3024 -1.4963 2.7957 8 6 5.7712 -1.9948 1.0170 9 6 6.7362 -2.2852 2.1374 10 6 7.6053 -1.3252 2.5611 11 6 8.5046 -1.5766 3.5953 12 6 8.5427 -2.7890 4.2148 13 6 7.6620 -3.8023 3.8062 14 6 7.6546 -5.0714 4.4075 15 7 6.8013 -5.9822 4.0015 16 6 5.9362 -5.7686 3.0193 17 6 5.8672 -4.5743 2.3687 18 6 6.7430 -3.5433 2.7557 19 6 3.4674 -1.2739 -0.6964 20 6 2.0862 -0.8075 -1.2026 21 1 2.1922 -0.1692 -2.0797 22 7 1.2268 -1.9569 -1.4969 23 6 1.2815 -2.5553 -2.7274 24 1 1.9585 -2.1802 -3.4807 25 6 0.4669 -3.6440 -3.0065 26 7 -0.3578 -4.1015 -2.0884 27 14 0.5420 -4.4608 -4.6849 28 1 1.5428 -3.7623 -5.5309 29 1 0.9348 -5.8840 -4.5255 30 1 -0.7922 -4.3850 -5.3324 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3633 0.5728 0.8532 33 1 -0.3633 0.4524 -0.9227 34 1 1.4524 -1.6787 1.3981 35 1 2.1516 -0.1810 2.0860 36 1 5.6297 -2.8938 0.4170 37 1 6.1718 -1.1986 0.3895 38 1 7.5975 -0.3545 2.0876 39 1 9.1826 -0.7974 3.9108 40 1 9.2456 -2.9692 5.0146 41 1 8.3407 -5.2932 5.2115 42 1 5.2670 -6.5644 2.7272 43 1 5.1547 -4.4217 1.5716 44 1 4.2426 -0.5995 -1.0602 45 1 3.6677 -2.2886 -1.0409 46 1 0.6190 -2.2940 -0.8203 47 1 -0.9273 -4.8621 -2.2835 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054793508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:54 Heat of formation + Delta-G solvation = 33.800957 kcal Electronic energy + Delta-G solvation = -29085.834285 eV Core-core repulsion = 25233.532233 eV Total energy + Delta-G solvation = -3852.302052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.07219 -39.76798 -37.94255 -37.21370 -33.98522 -33.94444 -32.45754 -31.41514 -30.67650 -30.45763 -28.16837 -27.71293 -25.69988 -24.25231 -23.90608 -23.67101 -22.30889 -21.24954 -19.34715 -18.90953 -18.13212 -17.61239 -17.15165 -16.85327 -16.66500 -15.76841 -15.40517 -14.90253 -14.66252 -14.53277 -14.33892 -14.14672 -13.89010 -13.75058 -13.49575 -13.10238 -13.00642 -12.89273 -12.66995 -12.26928 -12.17367 -11.98101 -11.94254 -11.73108 -11.59138 -11.18268 -11.10877 -10.98493 -10.82246 -10.52391 -10.28959 -10.22057 -9.96513 -9.74671 -9.64282 -9.56044 -9.14192 -9.07007 -8.29911 -8.10064 -7.12598 -5.89410 -3.19837 0.26242 0.83370 1.81119 2.83059 2.91116 3.32650 3.35393 3.41286 3.43872 4.01182 4.26764 4.38952 4.47682 4.54969 4.65858 4.70416 4.77814 4.91862 5.00468 5.09885 5.12277 5.15990 5.28414 5.30246 5.33245 5.46695 5.58529 5.59063 5.69232 5.70654 5.72950 5.86599 5.89969 5.92123 5.94934 6.13092 6.20640 6.22660 6.29504 6.31066 6.38577 6.46988 6.54602 6.58112 6.69261 6.72329 6.87746 7.58839 7.82699 7.90616 8.28208 8.38429 9.40477 9.94924 10.29595 11.32583 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012287 B = 0.003074 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.320886 B = 9106.369890 C =10364.101637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.527 3.473 7 O -0.545 6.545 8 C -0.102 4.102 9 C -0.049 4.049 10 C -0.091 4.091 11 C -0.115 4.115 12 C -0.092 4.092 13 C -0.111 4.111 14 C 0.140 3.860 15 N -0.489 5.489 16 C 0.074 3.926 17 C -0.145 4.145 18 C -0.007 4.007 19 C 0.069 3.931 20 C 0.173 3.827 21 H 0.070 0.930 22 N -0.712 5.712 23 C -0.248 4.248 24 H 0.073 0.927 25 C -0.008 4.008 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.154 0.846 43 H 0.136 0.864 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.387 0.613 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.087 6.587 9.087 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.340 5.340 6 C 0.315 3.685 7 O -0.423 6.423 8 C -0.142 4.142 9 C -0.049 4.049 10 C -0.110 4.110 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.113 4.113 14 C -0.032 4.032 15 N -0.196 5.196 16 C -0.069 4.069 17 C -0.164 4.164 18 C -0.013 4.013 19 C -0.057 4.057 20 C 0.060 3.940 21 H 0.088 0.912 22 N -0.354 5.354 23 C -0.379 4.379 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.154 0.846 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.936 5.649 9.879 19.582 hybrid contribution -0.243 0.177 -1.245 1.281 sum 15.692 5.826 8.634 18.834 Atomic orbital electron populations 1.21549 0.93380 1.02988 1.00996 1.22654 0.96976 0.98400 0.95335 0.90319 1.22300 0.82809 0.98330 0.97239 1.48450 1.11878 1.65814 1.07828 1.19976 0.84577 0.77666 0.86259 1.90704 1.83248 1.53858 1.14528 1.20664 0.92235 1.04280 0.96990 1.19097 0.96148 0.92887 0.96783 1.20812 0.95007 0.98572 0.96656 1.20846 0.98934 0.97253 0.96286 1.20925 0.97994 0.92801 0.99482 1.18987 0.98119 0.96404 0.97834 1.23151 0.95179 0.87870 0.97009 1.67409 1.04493 1.34721 1.13012 1.22181 0.96141 0.96527 0.92003 1.21974 0.99163 0.93797 1.01502 1.17950 0.94757 0.93893 0.94670 1.23318 1.01658 1.02197 0.78535 1.21189 0.88276 0.89865 0.94642 0.91207 1.42468 1.45403 1.32766 1.14720 1.19258 1.18588 1.09463 0.90550 0.90945 1.24751 0.98894 0.98875 0.97907 1.69661 1.27227 1.27502 1.33129 0.86146 0.77290 0.79241 0.83626 1.20486 1.21831 1.21814 0.91202 0.93660 0.92072 0.91251 0.91365 0.87634 0.87728 0.85690 0.85577 0.85071 0.82166 0.82897 0.84576 0.92694 0.90437 0.77713 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.70 3.53 -88.34 -0.31 -2.01 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.86 6.36 -2.41 -0.02 1.85 16 5 N -0.61 -9.70 3.32 -170.38 -0.57 -10.26 16 6 C 0.53 8.49 7.84 -10.98 -0.09 8.40 16 7 O -0.55 -10.60 16.29 5.56 0.09 -10.51 16 8 C -0.10 -1.28 4.46 -29.03 -0.13 -1.41 16 9 C -0.05 -0.63 4.38 -104.61 -0.46 -1.09 16 10 C -0.09 -1.00 9.58 -39.89 -0.38 -1.39 16 11 C -0.12 -1.10 9.94 -39.90 -0.40 -1.50 16 12 C -0.09 -0.90 9.81 -39.53 -0.39 -1.29 16 13 C -0.11 -1.37 5.74 -106.86 -0.61 -1.99 16 14 C 0.14 1.63 11.05 -16.97 -0.19 1.45 16 15 N -0.49 -6.73 10.30 -13.15 -0.14 -6.87 16 16 C 0.07 1.01 11.07 -17.96 -0.20 0.82 16 17 C -0.14 -2.04 9.36 -39.39 -0.37 -2.41 16 18 C -0.01 -0.10 5.75 -106.81 -0.61 -0.72 16 19 C 0.07 1.07 6.22 -3.07 -0.02 1.05 16 20 C 0.17 2.99 3.37 -66.09 -0.22 2.77 16 21 H 0.07 1.19 8.12 -51.93 -0.42 0.76 16 22 N -0.71 -15.90 4.61 -51.65 -0.24 -16.14 16 23 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 24 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 26 N -0.93 -26.48 13.06 55.49 0.72 -25.76 16 27 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.07 1.24 6.38 -51.93 -0.33 0.91 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.24 7.99 -51.93 -0.41 0.83 16 35 H 0.07 1.07 8.03 -51.93 -0.42 0.66 16 36 H 0.11 1.27 6.81 -51.93 -0.35 0.91 16 37 H 0.10 1.04 8.05 -51.93 -0.42 0.63 16 38 H 0.13 1.12 8.05 -52.49 -0.42 0.70 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.16 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.14 1.88 6.65 -52.49 -0.35 1.53 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 46 H 0.39 9.37 6.10 -40.82 -0.25 9.13 16 47 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -32.16 386.39 -10.36 -42.52 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.72 Total: 10.86 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.31 Total: -5.83 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.22 Total: -59.02 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.16 -10.36 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054793508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.322 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds