Wall clock time and date at job start Tue Mar 31 2020 22:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.91671 * 2 1 4 4 C 1.55384 * 111.19244 * 235.93468 * 2 1 3 5 5 N 1.47422 * 104.87360 * 204.98190 * 4 2 1 6 6 C 1.34775 * 125.64813 * 204.16804 * 5 4 2 7 7 O 1.21559 * 120.00067 * 354.84193 * 6 5 4 8 8 C 1.47859 * 120.00098 * 174.85045 * 6 5 4 9 9 C 1.39615 * 120.11363 * 8.05877 * 8 6 5 10 10 C 1.37971 * 119.98446 * 179.97438 * 9 8 6 11 11 C 1.38265 * 120.21937 * 0.02562 * 10 9 8 12 12 C 1.38907 * 120.22658 * 359.97438 * 11 10 9 13 13 N 1.40226 * 119.99508 * 180.02562 * 12 11 10 14 14 C 1.36560 * 125.67155 * 179.69178 * 13 12 11 15 15 C 1.34848 * 108.20539 * 179.82617 * 14 13 12 16 16 C 1.40945 * 107.46517 * 0.42381 * 15 14 13 17 17 C 1.34849 * 107.46529 * 359.73779 * 16 15 14 18 18 C 1.38589 * 120.00959 * 359.78582 * 12 11 10 19 19 C 1.47024 * 108.70460 * 24.13193 * 5 4 2 20 20 C 1.54327 * 107.27003 * 358.94190 * 19 5 4 21 21 H 1.08997 * 110.71498 * 219.26425 * 20 19 5 22 22 N 1.46499 * 110.72177 * 96.16856 * 20 19 5 23 23 C 1.36941 * 120.00025 * 88.83804 * 22 20 19 24 24 H 1.07995 * 119.99387 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99882 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00067 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99715 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46907 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47272 * 299.99920 * 27 25 23 30 30 H 1.48502 * 109.47195 * 60.00361 * 27 25 23 31 31 H 1.09000 * 109.47309 * 296.10533 * 1 2 3 32 32 H 1.09004 * 109.46368 * 56.10510 * 1 2 3 33 33 H 1.09000 * 109.47210 * 176.09667 * 1 2 3 34 34 H 1.08997 * 110.34408 * 86.13122 * 4 2 1 35 35 H 1.09002 * 110.44527 * 323.88589 * 4 2 1 36 36 H 1.07994 * 120.00660 * 359.96525 * 9 8 6 37 37 H 1.08005 * 119.88917 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.88512 * 179.97438 * 11 10 9 39 39 H 1.08003 * 125.89589 * 359.97438 * 14 13 12 40 40 H 1.08000 * 126.27226 * 180.18000 * 15 14 13 41 41 H 1.07994 * 126.26787 * 179.75372 * 16 15 14 42 42 H 1.08007 * 125.90017 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.10616 * 180.23669 * 18 12 11 44 44 H 1.08992 * 109.88037 * 239.51923 * 19 5 4 45 45 H 1.09003 * 109.88117 * 118.35322 * 19 5 4 46 46 H 0.97004 * 120.00058 * 268.84339 * 22 20 19 47 47 H 0.96998 * 120.00013 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0918 -0.8115 -1.2001 5 7 3.4327 -1.2461 -0.7686 6 6 4.4561 -1.5643 -1.5858 7 8 4.2861 -1.5951 -2.7891 8 6 5.7856 -1.8761 -1.0188 9 6 5.9450 -2.0069 0.3621 10 6 7.1867 -2.2985 0.8882 11 6 8.2759 -2.4614 0.0524 12 6 8.1275 -2.3332 -1.3228 13 7 9.2354 -2.5000 -2.1661 14 6 9.2205 -2.4062 -3.5284 15 6 10.4725 -2.6241 -3.9794 16 6 11.2893 -2.8709 -2.8575 17 6 10.5075 -2.7890 -1.7618 18 6 6.8836 -2.0455 -1.8618 19 6 3.4691 -1.2741 0.7009 20 6 2.0861 -0.8078 1.2024 21 1 2.1891 -0.1705 2.0806 22 7 1.2267 -1.9572 1.4964 23 6 1.2428 -2.5230 2.7434 24 1 1.8888 -2.1215 3.5101 25 6 0.4282 -3.6118 3.0221 26 7 -0.3594 -4.1007 2.0877 27 14 0.4497 -4.3831 4.7233 28 1 -0.5031 -5.5214 4.7627 29 1 1.8185 -4.8718 5.0279 30 1 0.0503 -3.3688 5.7317 31 1 -0.3634 0.4522 0.9228 32 1 -0.3632 0.5731 -0.8531 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1645 -0.1787 -2.0846 35 1 1.4601 -1.6761 -1.4041 36 1 5.0967 -1.8798 1.0181 37 1 7.3082 -2.3997 1.9566 38 1 9.2455 -2.6891 0.4701 39 1 8.3558 -2.1918 -4.1389 40 1 10.7904 -2.6155 -5.0115 41 1 12.3475 -3.0860 -2.8726 42 1 10.8315 -2.9274 -0.7408 43 1 6.7656 -1.9492 -2.9311 44 1 4.2428 -0.5985 1.0655 45 1 3.6664 -2.2885 1.0476 46 1 0.6463 -2.3176 0.8078 47 1 -0.9284 -4.8618 2.2824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054873743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:22 Heat of formation + Delta-G solvation = 90.792934 kcal Electronic energy + Delta-G solvation = -28820.220071 eV Core-core repulsion = 24970.389377 eV Total energy + Delta-G solvation = -3849.830694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.81016 -40.37883 -38.59293 -37.51503 -34.22783 -33.50925 -32.40628 -31.47885 -30.62976 -29.11599 -29.03878 -27.95563 -26.34024 -24.44316 -23.60091 -23.12887 -22.13245 -20.63398 -20.20896 -19.65391 -19.38374 -18.40393 -17.53681 -16.68508 -15.99932 -15.98458 -15.44645 -15.13608 -14.96791 -14.66678 -14.45597 -14.21713 -13.90749 -13.82490 -13.62842 -13.27709 -13.12225 -12.88037 -12.60933 -12.50476 -12.44480 -12.25917 -12.03105 -11.76781 -11.63437 -11.39478 -11.18474 -10.96451 -10.73304 -10.42398 -10.31890 -10.05630 -10.00433 -9.86819 -9.72355 -9.27395 -9.06204 -8.45380 -8.38722 -8.20220 -7.15301 -5.91393 -3.22340 0.57789 0.86594 2.19517 2.58294 2.80236 2.93540 3.16218 3.34363 3.39336 3.41177 3.73520 4.35231 4.45548 4.49283 4.67223 4.77389 4.89153 4.91423 4.99886 5.03042 5.11623 5.25253 5.29813 5.33848 5.39222 5.50088 5.54258 5.63165 5.65681 5.75559 5.79310 5.87005 6.00871 6.07180 6.07680 6.11784 6.13723 6.15940 6.25212 6.27430 6.40048 6.43295 6.56395 6.62919 6.70885 6.86081 6.99009 7.22603 7.55132 7.70693 8.25273 8.27347 9.38099 9.91898 10.26456 11.30343 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.002750 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.980557 B =10181.073051 C =11502.686029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.114 4.114 3 H 0.080 0.920 4 C 0.115 3.885 5 N -0.597 5.597 6 C 0.569 3.431 7 O -0.548 6.548 8 C -0.096 4.096 9 C -0.131 4.131 10 C -0.098 4.098 11 C -0.120 4.120 12 C 0.124 3.876 13 N -0.394 5.394 14 C -0.012 4.012 15 C -0.194 4.194 16 C -0.193 4.193 17 C -0.017 4.017 18 C -0.084 4.084 19 C 0.057 3.943 20 C 0.170 3.830 21 H 0.074 0.926 22 N -0.711 5.711 23 C -0.252 4.252 24 H 0.072 0.928 25 C -0.006 4.006 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.291 1.291 29 H -0.285 1.285 30 H -0.285 1.285 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.166 0.834 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.141 0.859 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.388 0.612 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.803 7.025 -5.286 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.328 5.328 6 C 0.358 3.642 7 O -0.428 6.428 8 C -0.099 4.099 9 C -0.149 4.149 10 C -0.116 4.116 11 C -0.140 4.140 12 C 0.032 3.968 13 N -0.066 5.066 14 C -0.139 4.139 15 C -0.218 4.218 16 C -0.217 4.217 17 C -0.144 4.144 18 C -0.104 4.104 19 C -0.068 4.068 20 C 0.057 3.943 21 H 0.092 0.908 22 N -0.352 5.352 23 C -0.382 4.382 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.574 5.574 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.212 1.212 30 H -0.211 1.211 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.192 0.808 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.183 0.817 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.159 0.841 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.223 0.777 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.507 6.942 -5.611 18.766 hybrid contribution 0.024 -0.792 0.707 1.062 sum 16.531 6.150 -4.904 18.307 Atomic orbital electron populations 1.21535 0.93175 1.03062 1.01035 1.22717 0.97081 0.98420 0.95178 0.90209 1.22399 0.82430 0.98507 0.97382 1.48252 1.11870 1.65019 1.07672 1.17796 0.83278 0.77495 0.85646 1.90749 1.83957 1.53708 1.14388 1.19718 0.93303 1.03115 0.93790 1.23111 1.00102 0.96346 0.95300 1.21071 0.91739 0.98547 1.00264 1.21011 1.00358 1.01759 0.90845 1.17709 0.86312 1.02759 0.90033 1.41640 1.06441 1.52599 1.05895 1.22001 1.00171 1.09498 0.82264 1.20985 0.92686 1.08950 0.99156 1.20977 0.99583 1.09118 0.91985 1.21885 0.82953 1.09430 1.00116 1.20823 0.89634 0.99061 1.00920 1.23808 1.01947 1.02046 0.79043 1.21280 0.88122 0.89989 0.94894 0.90786 1.42452 1.47183 1.32887 1.12629 1.19168 1.20102 1.09972 0.89003 0.90972 1.24762 0.98986 0.98781 0.97781 1.69641 1.28491 1.26770 1.32522 0.86280 0.77299 0.78751 0.83870 1.21692 1.21174 1.21150 0.92007 0.93638 0.91142 0.91102 0.90912 0.80825 0.84329 0.85054 0.81683 0.84197 0.84245 0.81857 0.84146 0.91534 0.89273 0.77678 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.86 37.16 0.33 -1.60 16 2 C -0.11 -1.66 3.53 -88.21 -0.31 -1.97 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.11 1.82 6.35 -2.27 -0.01 1.80 16 5 N -0.60 -9.72 3.33 -174.90 -0.58 -10.30 16 6 C 0.57 9.78 7.81 -12.32 -0.10 9.69 16 7 O -0.55 -10.85 16.67 5.31 0.09 -10.77 16 8 C -0.10 -1.41 5.87 -104.99 -0.62 -2.02 16 9 C -0.13 -1.67 8.59 -39.17 -0.34 -2.01 16 10 C -0.10 -1.04 10.02 -39.67 -0.40 -1.43 16 11 C -0.12 -1.27 9.45 -39.32 -0.37 -1.64 16 12 C 0.12 1.53 6.61 -83.64 -0.55 0.98 16 13 N -0.39 -4.69 2.97 -60.96 -0.18 -4.87 16 14 C -0.01 -0.14 10.73 -16.65 -0.18 -0.32 16 15 C -0.19 -2.04 10.86 -39.76 -0.43 -2.47 16 16 C -0.19 -1.93 10.86 -39.76 -0.43 -2.37 16 17 C -0.02 -0.18 10.73 -16.64 -0.18 -0.35 16 18 C -0.08 -1.16 8.99 -39.00 -0.35 -1.51 16 19 C 0.06 0.87 4.61 -3.06 -0.01 0.86 16 20 C 0.17 2.86 3.36 -66.09 -0.22 2.63 16 21 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 22 N -0.71 -15.53 4.56 -51.65 -0.24 -15.77 16 23 C -0.25 -6.23 9.97 -15.06 -0.15 -6.38 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 27 Si 0.91 20.94 29.55 -169.99 -5.02 15.91 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 1.23 6.44 -51.93 -0.33 0.89 16 34 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 35 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 36 H 0.18 2.20 2.77 -57.13 -0.16 2.05 16 37 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.13 1.05 6.69 -52.49 -0.35 0.70 16 39 H 0.17 1.66 7.01 -52.48 -0.37 1.29 16 40 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.16 1.23 7.00 -52.48 -0.37 0.86 16 43 H 0.14 1.93 6.31 -52.49 -0.33 1.60 16 44 H 0.07 0.85 6.68 -51.93 -0.35 0.50 16 45 H 0.09 1.52 6.69 -51.93 -0.35 1.18 16 46 H 0.39 9.25 6.21 -40.82 -0.25 8.99 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -30.70 378.92 -10.12 -40.81 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.20 Total: 13.18 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -4.42 Total: -8.36 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.27 Total: -56.49 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.70 -10.12 -40.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054873743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.607 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds