Wall clock time and date at job start Tue Mar 31 2020 22:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.91671 * 2 1 4 4 C 1.55384 * 111.19244 * 235.93468 * 2 1 3 5 5 N 1.47422 * 104.87360 * 204.98190 * 4 2 1 6 6 C 1.34775 * 125.64813 * 204.16804 * 5 4 2 7 7 O 1.21559 * 120.00067 * 354.84193 * 6 5 4 8 8 C 1.47859 * 120.00098 * 174.85045 * 6 5 4 9 9 C 1.39615 * 120.11363 * 8.05877 * 8 6 5 10 10 C 1.37971 * 119.98446 * 179.97438 * 9 8 6 11 11 C 1.38265 * 120.21937 * 0.02562 * 10 9 8 12 12 C 1.38907 * 120.22658 * 359.97438 * 11 10 9 13 13 N 1.40226 * 119.99508 * 180.02562 * 12 11 10 14 14 C 1.36560 * 125.67155 * 179.69178 * 13 12 11 15 15 C 1.34848 * 108.20539 * 179.82617 * 14 13 12 16 16 C 1.40945 * 107.46517 * 0.42381 * 15 14 13 17 17 C 1.34849 * 107.46529 * 359.73779 * 16 15 14 18 18 C 1.38589 * 120.00959 * 359.78582 * 12 11 10 19 19 C 1.47024 * 108.70460 * 24.13193 * 5 4 2 20 20 C 1.54327 * 107.27003 * 358.94190 * 19 5 4 21 21 H 1.08997 * 110.71498 * 219.26425 * 20 19 5 22 22 N 1.46499 * 110.72177 * 96.16856 * 20 19 5 23 23 C 1.36941 * 120.00025 * 88.83804 * 22 20 19 24 24 H 1.07995 * 119.99387 * 0.02562 * 23 22 20 25 25 C 1.38807 * 119.99882 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00067 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99715 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.46907 * 179.97438 * 27 25 23 29 29 H 1.48498 * 109.47272 * 299.99920 * 27 25 23 30 30 H 1.48502 * 109.47195 * 60.00361 * 27 25 23 31 31 H 1.09000 * 109.47309 * 296.10533 * 1 2 3 32 32 H 1.09004 * 109.46368 * 56.10510 * 1 2 3 33 33 H 1.09000 * 109.47210 * 176.09667 * 1 2 3 34 34 H 1.08997 * 110.34408 * 86.13122 * 4 2 1 35 35 H 1.09002 * 110.44527 * 323.88589 * 4 2 1 36 36 H 1.07994 * 120.00660 * 359.96525 * 9 8 6 37 37 H 1.08005 * 119.88917 * 180.02562 * 10 9 8 38 38 H 1.07998 * 119.88512 * 179.97438 * 11 10 9 39 39 H 1.08003 * 125.89589 * 359.97438 * 14 13 12 40 40 H 1.08000 * 126.27226 * 180.18000 * 15 14 13 41 41 H 1.07994 * 126.26787 * 179.75372 * 16 15 14 42 42 H 1.08007 * 125.90017 * 180.02562 * 17 16 15 43 43 H 1.08001 * 120.10616 * 180.23669 * 18 12 11 44 44 H 1.08992 * 109.88037 * 239.51923 * 19 5 4 45 45 H 1.09003 * 109.88117 * 118.35322 * 19 5 4 46 46 H 0.97004 * 120.00058 * 268.84339 * 22 20 19 47 47 H 0.96998 * 120.00013 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0918 -0.8115 -1.2001 5 7 3.4327 -1.2461 -0.7686 6 6 4.4561 -1.5643 -1.5858 7 8 4.2861 -1.5951 -2.7891 8 6 5.7856 -1.8761 -1.0188 9 6 5.9450 -2.0069 0.3621 10 6 7.1867 -2.2985 0.8882 11 6 8.2759 -2.4614 0.0524 12 6 8.1275 -2.3332 -1.3228 13 7 9.2354 -2.5000 -2.1661 14 6 9.2205 -2.4062 -3.5284 15 6 10.4725 -2.6241 -3.9794 16 6 11.2893 -2.8709 -2.8575 17 6 10.5075 -2.7890 -1.7618 18 6 6.8836 -2.0455 -1.8618 19 6 3.4691 -1.2741 0.7009 20 6 2.0861 -0.8078 1.2024 21 1 2.1891 -0.1705 2.0806 22 7 1.2267 -1.9572 1.4964 23 6 1.2428 -2.5230 2.7434 24 1 1.8888 -2.1215 3.5101 25 6 0.4282 -3.6118 3.0221 26 7 -0.3594 -4.1007 2.0877 27 14 0.4497 -4.3831 4.7233 28 1 -0.5031 -5.5214 4.7627 29 1 1.8185 -4.8718 5.0279 30 1 0.0503 -3.3688 5.7317 31 1 -0.3634 0.4522 0.9228 32 1 -0.3632 0.5731 -0.8531 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1645 -0.1787 -2.0846 35 1 1.4601 -1.6761 -1.4041 36 1 5.0967 -1.8798 1.0181 37 1 7.3082 -2.3997 1.9566 38 1 9.2455 -2.6891 0.4701 39 1 8.3558 -2.1918 -4.1389 40 1 10.7904 -2.6155 -5.0115 41 1 12.3475 -3.0860 -2.8726 42 1 10.8315 -2.9274 -0.7408 43 1 6.7656 -1.9492 -2.9311 44 1 4.2428 -0.5985 1.0655 45 1 3.6664 -2.2885 1.0476 46 1 0.6463 -2.3176 0.8078 47 1 -0.9284 -4.8618 2.2824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054873743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:21 Heat of formation + Delta-G solvation = 74.972145 kcal Electronic energy + Delta-G solvation = -28820.906112 eV Core-core repulsion = 24970.389377 eV Total energy + Delta-G solvation = -3850.516735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.64327 -41.59062 -39.66855 -38.83406 -35.79979 -34.66343 -33.67733 -32.53035 -32.17931 -30.09343 -29.87878 -29.37485 -27.54386 -25.97991 -24.97239 -24.07314 -23.32801 -21.63640 -21.06509 -20.74667 -20.58454 -19.54164 -19.17401 -17.83054 -17.36741 -17.02864 -16.65623 -16.41249 -16.03249 -15.90646 -15.76927 -15.40643 -15.19071 -14.82527 -14.70194 -14.58829 -14.30166 -14.24263 -13.74772 -13.55684 -13.33883 -13.25576 -13.13701 -13.02471 -12.87300 -12.74515 -12.66462 -12.45915 -12.24688 -12.16493 -11.71395 -11.45628 -11.36431 -11.20318 -10.93044 -10.82816 -10.25549 -9.71206 -9.24870 -9.07853 -8.98352 -7.89609 -5.18009 -0.39502 -0.07761 1.31631 1.52716 1.53932 1.59724 1.68710 1.79237 1.98181 2.02954 2.59976 2.71760 3.24041 3.41031 3.62581 3.63243 3.78425 3.86502 3.90219 4.01611 4.03941 4.05847 4.15518 4.25397 4.39943 4.42611 4.52850 4.56621 4.61216 4.66850 4.68579 4.76597 4.83644 4.90830 4.94714 5.00348 5.10099 5.17531 5.21873 5.26025 5.28780 5.32476 5.32857 5.56293 5.59951 5.62093 5.94289 6.18686 6.30987 6.39426 6.42281 6.94958 7.39096 8.13192 8.35474 9.33489 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.002750 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.980557 B =10181.073051 C =11502.686029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.113 3.887 5 N -0.598 5.598 6 C 0.562 3.438 7 O -0.587 6.587 8 C -0.116 4.116 9 C -0.135 4.135 10 C -0.088 4.088 11 C -0.109 4.109 12 C 0.119 3.881 13 N -0.405 5.405 14 C -0.042 4.042 15 C -0.197 4.197 16 C -0.202 4.202 17 C -0.022 4.022 18 C -0.099 4.099 19 C 0.067 3.933 20 C 0.160 3.840 21 H 0.092 0.908 22 N -0.723 5.723 23 C -0.233 4.233 24 H 0.088 0.912 25 C -0.074 4.074 26 N -0.971 5.971 27 Si 0.967 3.033 28 H -0.307 1.307 29 H -0.276 1.276 30 H -0.277 1.277 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.194 0.806 43 H 0.127 0.873 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.833 8.281 -3.209 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.353 3.647 7 O -0.469 6.469 8 C -0.120 4.120 9 C -0.153 4.153 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.027 3.973 13 N -0.077 5.077 14 C -0.168 4.168 15 C -0.221 4.221 16 C -0.225 4.225 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.057 4.057 20 C 0.050 3.950 21 H 0.109 0.891 22 N -0.362 5.362 23 C -0.365 4.365 24 H 0.106 0.894 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.234 1.234 29 H -0.202 1.202 30 H -0.203 1.203 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.192 0.808 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.211 0.789 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.589 8.251 -3.513 21.544 hybrid contribution -0.790 -1.118 -0.016 1.369 sum 18.799 7.133 -3.528 20.414 Atomic orbital electron populations 1.21463 0.93441 1.01336 1.02021 1.22684 0.96721 0.99330 0.93053 0.86954 1.22396 0.82191 0.97883 0.98498 1.48338 1.11745 1.64639 1.08128 1.18305 0.84348 0.76770 0.85314 1.90713 1.84743 1.55494 1.15998 1.19579 0.92041 1.05415 0.94925 1.23122 1.01286 0.96726 0.94132 1.21450 0.90505 0.96693 1.01968 1.21420 1.01875 0.99790 0.89790 1.17864 0.85903 1.02494 0.91077 1.41779 1.06873 1.53135 1.05887 1.22229 1.00865 1.10952 0.82750 1.21328 0.92474 1.07999 1.00338 1.21357 1.00720 1.08815 0.91653 1.22479 0.82143 1.08462 1.01697 1.20773 0.90515 1.00274 1.00397 1.23686 1.01737 1.01940 0.78328 1.21584 0.88096 0.88829 0.96527 0.89057 1.42631 1.47916 1.34171 1.11496 1.19643 1.18136 1.08645 0.90075 0.89381 1.25494 0.99981 1.00366 1.00829 1.69814 1.30342 1.27569 1.34395 0.85312 0.77059 0.77474 0.80492 1.23428 1.20245 1.20305 0.92138 0.91231 0.94427 0.90421 0.93496 0.80836 0.80863 0.81717 0.81821 0.82705 0.82004 0.78910 0.85499 0.87862 0.90968 0.79263 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.86 71.98 0.64 -2.99 16 2 C -0.10 -2.71 3.53 -9.23 -0.03 -2.74 16 3 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.11 3.59 6.35 87.02 0.55 4.14 16 5 N -0.60 -19.40 3.33 -825.54 -2.75 -22.15 16 6 C 0.56 19.76 7.81 86.79 0.68 20.44 16 7 O -0.59 -24.36 16.67 -3.90 -0.07 -24.43 16 8 C -0.12 -3.40 5.87 -20.10 -0.12 -3.51 16 9 C -0.13 -3.17 8.59 22.54 0.19 -2.97 16 10 C -0.09 -1.54 10.02 22.21 0.22 -1.32 16 11 C -0.11 -1.92 9.45 22.44 0.21 -1.71 16 12 C 0.12 2.77 6.61 38.04 0.25 3.02 16 13 N -0.40 -9.08 2.97 -346.78 -1.03 -10.11 16 14 C -0.04 -0.95 10.73 83.18 0.89 -0.06 16 15 C -0.20 -3.94 10.86 22.15 0.24 -3.70 16 16 C -0.20 -3.59 10.86 22.15 0.24 -3.35 16 17 C -0.02 -0.39 10.73 83.18 0.89 0.50 16 18 C -0.10 -2.76 8.99 22.65 0.20 -2.56 16 19 C 0.07 1.96 4.61 86.73 0.40 2.36 16 20 C 0.16 5.12 3.36 46.18 0.16 5.27 16 21 H 0.09 2.66 8.11 -2.39 -0.02 2.65 16 22 N -0.72 -31.55 4.56 -317.33 -1.45 -33.00 16 23 C -0.23 -11.37 9.97 84.03 0.84 -10.54 16 24 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 26 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 27 Si 0.97 43.20 29.55 68.60 2.03 45.23 16 28 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 29 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 30 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.04 1.34 6.44 -2.39 -0.02 1.33 16 34 H 0.08 2.35 8.09 -2.39 -0.02 2.34 16 35 H 0.05 1.73 8.00 -2.39 -0.02 1.71 16 36 H 0.18 4.00 2.77 -7.28 -0.02 3.98 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.17 1.77 6.69 -2.91 -0.02 1.75 16 39 H 0.16 3.55 7.01 -2.91 -0.02 3.53 16 40 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.19 2.06 7.00 -2.91 -0.02 2.04 16 43 H 0.13 3.76 6.31 -2.91 -0.02 3.74 16 44 H 0.10 2.29 6.68 -2.39 -0.02 2.27 16 45 H 0.07 2.39 6.69 -2.39 -0.02 2.38 16 46 H 0.37 18.42 6.21 -92.70 -0.58 17.85 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.33 378.92 4.37 -64.96 By element: Atomic # 1 Polarization: 38.82 SS G_CDS: 0.42 Total: 39.24 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.93 Total: -3.22 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -4.94 Total: -121.78 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.07 Total: -24.43 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -69.33 4.37 -64.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054873743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.933 kcal (2) G-P(sol) polarization free energy of solvation -69.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds