Wall clock time and date at job start Tue Mar 31 2020 22:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.91306 * 2 1 4 4 C 1.55134 * 110.90644 * 124.07060 * 2 1 3 5 5 N 1.47416 * 104.72327 * 155.27445 * 4 2 1 6 6 C 1.34780 * 125.64801 * 155.81649 * 5 4 2 7 7 O 1.21545 * 119.99980 * 4.86346 * 6 5 4 8 8 C 1.47863 * 120.00076 * 184.86453 * 6 5 4 9 9 C 1.39617 * 120.11271 * 351.94799 * 8 6 5 10 10 C 1.37966 * 119.98641 * 180.02562 * 9 8 6 11 11 C 1.38263 * 120.21750 * 359.97438 * 10 9 8 12 12 C 1.38905 * 120.23115 * 0.02562 * 11 10 9 13 13 N 1.40224 * 120.00163 * 179.97438 * 12 11 10 14 14 C 1.36563 * 125.67203 * 179.69734 * 13 12 11 15 15 C 1.34848 * 108.19935 * 179.86745 * 14 13 12 16 16 C 1.40939 * 107.47093 * 0.38446 * 15 14 13 17 17 C 1.34853 * 107.46480 * 359.75841 * 16 15 14 18 18 C 1.38595 * 120.00703 * 0.02562 * 12 11 10 19 19 C 1.47022 * 108.70500 * 335.55397 * 5 4 2 20 20 C 1.54319 * 107.26919 * 1.28629 * 19 5 4 21 21 H 1.09002 * 110.72154 * 140.55573 * 20 19 5 22 22 N 1.46503 * 110.71972 * 263.65299 * 20 19 5 23 23 C 1.36937 * 119.99709 * 273.54298 * 22 20 19 24 24 H 1.08001 * 120.00103 * 0.02562 * 23 22 20 25 25 C 1.38816 * 119.99873 * 179.97438 * 23 22 20 26 26 N 1.31617 * 119.99659 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00226 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46760 * 60.00357 * 27 25 23 29 29 H 1.48495 * 109.47383 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.47134 * 300.00597 * 27 25 23 31 31 H 1.09004 * 109.46578 * 183.90776 * 1 2 3 32 32 H 1.08991 * 109.47037 * 303.90270 * 1 2 3 33 33 H 1.08991 * 109.46981 * 63.90610 * 1 2 3 34 34 H 1.09005 * 110.49786 * 36.43258 * 4 2 1 35 35 H 1.09000 * 110.34529 * 274.04154 * 4 2 1 36 36 H 1.08000 * 120.00665 * 359.97438 * 9 8 6 37 37 H 1.08005 * 119.89408 * 179.72165 * 10 9 8 38 38 H 1.08003 * 119.88865 * 180.02562 * 11 10 9 39 39 H 1.07999 * 125.89914 * 359.97438 * 14 13 12 40 40 H 1.07998 * 126.26303 * 180.14444 * 15 14 13 41 41 H 1.08001 * 126.27143 * 179.75852 * 16 15 14 42 42 H 1.07998 * 125.90275 * 180.02562 * 17 16 15 43 43 H 1.07993 * 120.10665 * 180.02562 * 18 12 11 44 44 H 1.09003 * 109.88239 * 120.70062 * 19 5 4 45 45 H 1.08997 * 109.88337 * 241.86982 * 19 5 4 46 46 H 0.96998 * 120.00204 * 93.55176 * 22 20 19 47 47 H 0.97004 * 119.99534 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0836 -0.8119 1.2004 5 7 3.4271 -1.2430 0.7735 6 6 4.4477 -1.5615 1.5942 7 8 4.2741 -1.5904 2.7969 8 6 5.7785 -1.8758 1.0316 9 6 5.9419 -2.0084 -0.3486 10 6 7.1847 -2.3022 -0.8707 11 6 8.2712 -2.4656 -0.0313 12 6 8.1189 -2.3356 1.3432 13 7 9.2239 -2.5028 2.1901 14 6 9.2074 -2.3958 3.5514 15 6 10.4555 -2.6258 4.0071 16 6 11.2753 -2.8754 2.8881 17 6 10.4968 -2.7941 1.7900 18 6 6.8745 -2.0417 1.8779 19 6 3.4675 -1.2742 -0.6959 20 6 2.0863 -0.8080 -1.2021 21 1 2.1923 -0.1701 -2.0796 22 7 1.2284 -1.9576 -1.5000 23 6 1.2849 -2.5530 -2.7318 24 1 1.9621 -2.1755 -3.4836 25 6 0.4724 -3.6427 -3.0140 26 7 -0.3526 -4.1031 -2.0976 27 14 0.5499 -4.4554 -4.6941 28 1 1.9249 -4.9611 -4.9363 29 1 -0.4089 -5.5884 -4.7406 30 1 0.1958 -3.4632 -5.7408 31 1 -0.3632 -1.0253 0.0700 32 1 -0.3633 0.5732 0.8529 33 1 -0.3633 0.4520 -0.9228 34 1 1.4525 -1.6781 1.3989 35 1 2.1516 -0.1801 2.0861 36 1 5.0955 -1.8819 -1.0073 37 1 7.3086 -2.4089 -1.9383 38 1 9.2418 -2.6951 -0.4458 39 1 8.3435 -2.1682 4.1583 40 1 10.7703 -2.6163 5.0402 41 1 12.3331 -3.0922 2.9067 42 1 10.8234 -2.9354 0.7703 43 1 6.7543 -1.9399 2.9463 44 1 4.2427 -0.5998 -1.0598 45 1 3.6651 -2.2894 -1.0398 46 1 0.6203 -2.2969 -0.8247 47 1 -0.9206 -4.8643 -2.2949 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054873749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:28 Heat of formation + Delta-G solvation = 75.081996 kcal Electronic energy + Delta-G solvation = -28832.087165 eV Core-core repulsion = 24981.575193 eV Total energy + Delta-G solvation = -3850.511972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.64375 -41.59682 -39.67671 -38.83916 -35.79775 -34.67056 -33.68023 -32.53238 -32.18878 -30.09163 -29.87891 -29.37333 -27.54118 -25.98682 -24.97298 -24.07292 -23.32620 -21.63677 -21.06489 -20.74907 -20.58408 -19.54498 -19.16552 -17.83359 -17.37196 -17.02784 -16.65413 -16.41591 -16.03446 -15.90990 -15.77388 -15.41654 -15.19139 -14.81850 -14.71125 -14.57945 -14.30510 -14.24843 -13.74518 -13.55717 -13.33754 -13.25568 -13.14459 -13.02775 -12.87111 -12.74486 -12.66455 -12.45853 -12.25330 -12.16433 -11.72340 -11.45732 -11.35022 -11.20726 -10.93064 -10.82927 -10.25594 -9.71192 -9.24877 -9.07867 -8.98319 -7.89713 -5.18020 -0.39484 -0.07792 1.31617 1.52666 1.53868 1.59694 1.68816 1.79233 1.98301 2.02931 2.59922 2.71757 3.24103 3.40922 3.62785 3.63516 3.78259 3.85876 3.90474 4.01635 4.03932 4.05743 4.15404 4.25398 4.39915 4.42594 4.52723 4.56578 4.61058 4.66813 4.68585 4.76566 4.83297 4.90567 4.94474 5.00430 5.10068 5.17428 5.21642 5.25922 5.28753 5.32513 5.32933 5.55842 5.59885 5.61866 5.94256 6.18684 6.31005 6.39430 6.42274 6.95019 7.39134 8.13357 8.35602 9.33430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.002770 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.279604 B =10107.133366 C =11450.206833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.113 0.887 4 C 0.113 3.887 5 N -0.598 5.598 6 C 0.562 3.438 7 O -0.587 6.587 8 C -0.116 4.116 9 C -0.135 4.135 10 C -0.088 4.088 11 C -0.109 4.109 12 C 0.119 3.881 13 N -0.405 5.405 14 C -0.042 4.042 15 C -0.197 4.197 16 C -0.202 4.202 17 C -0.022 4.022 18 C -0.099 4.099 19 C 0.068 3.932 20 C 0.160 3.840 21 H 0.090 0.910 22 N -0.723 5.723 23 C -0.233 4.233 24 H 0.088 0.912 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.967 3.033 28 H -0.277 1.277 29 H -0.307 1.307 30 H -0.277 1.277 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.174 0.826 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.194 0.806 43 H 0.127 0.873 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.767 8.315 3.298 21.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.131 0.869 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.353 3.647 7 O -0.469 6.469 8 C -0.120 4.120 9 C -0.153 4.153 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.027 3.973 13 N -0.077 5.077 14 C -0.168 4.168 15 C -0.221 4.221 16 C -0.225 4.225 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.057 4.057 20 C 0.050 3.950 21 H 0.108 0.892 22 N -0.363 5.363 23 C -0.365 4.365 24 H 0.106 0.894 25 C -0.267 4.267 26 N -0.621 5.621 27 Si 0.797 3.203 28 H -0.203 1.203 29 H -0.234 1.234 30 H -0.203 1.203 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.192 0.808 37 H 0.191 0.809 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.173 0.827 41 H 0.180 0.820 42 H 0.211 0.789 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.208 0.792 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.529 8.278 3.606 21.515 hybrid contribution -0.776 -1.130 0.012 1.371 sum 18.753 7.147 3.617 20.392 Atomic orbital electron populations 1.21476 0.93459 1.01340 1.02090 1.22634 0.96762 0.99347 0.92993 0.86878 1.22367 0.82131 0.97892 0.98549 1.48352 1.11729 1.64677 1.08099 1.18305 0.84389 0.76757 0.85291 1.90709 1.84680 1.55500 1.16049 1.19582 0.92047 1.05410 0.94928 1.23122 1.01246 0.96734 0.94170 1.21447 0.90523 0.96693 1.01956 1.21419 1.01888 0.99800 0.89771 1.17865 0.85966 1.02473 0.91036 1.41779 1.06937 1.53032 1.05926 1.22229 1.00956 1.10848 0.82761 1.21326 0.92551 1.07923 1.00338 1.21357 1.00714 1.08833 0.91640 1.22479 0.82097 1.08505 1.01705 1.20772 0.90523 1.00264 1.00392 1.23677 1.01742 1.01935 0.78333 1.21576 0.88166 0.88831 0.96453 0.89193 1.42637 1.46084 1.33989 1.13590 1.19636 1.17085 1.08333 0.91442 0.89386 1.25498 0.99768 1.00460 1.00956 1.69816 1.28935 1.28157 1.35210 0.85311 0.77012 0.77572 0.80442 1.20264 1.23423 1.20272 0.94419 0.91163 0.92113 0.93479 0.90377 0.80846 0.80871 0.81718 0.81814 0.82704 0.82002 0.78914 0.85494 0.87877 0.90987 0.79220 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 8.85 71.98 0.64 -3.00 16 2 C -0.10 -2.69 3.53 -9.32 -0.03 -2.73 16 3 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 4 C 0.11 3.60 6.34 86.94 0.55 4.15 16 5 N -0.60 -19.43 3.32 -826.06 -2.75 -22.18 16 6 C 0.56 19.79 7.81 86.79 0.68 20.46 16 7 O -0.59 -24.37 16.67 -3.86 -0.06 -24.44 16 8 C -0.12 -3.41 5.87 -20.10 -0.12 -3.52 16 9 C -0.13 -3.18 8.59 22.54 0.19 -2.99 16 10 C -0.09 -1.55 10.02 22.21 0.22 -1.32 16 11 C -0.11 -1.93 9.45 22.44 0.21 -1.72 16 12 C 0.12 2.77 6.61 38.04 0.25 3.02 16 13 N -0.40 -9.09 2.97 -346.79 -1.03 -10.12 16 14 C -0.04 -0.95 10.73 83.18 0.89 -0.06 16 15 C -0.20 -3.95 10.86 22.15 0.24 -3.71 16 16 C -0.20 -3.59 10.86 22.15 0.24 -3.35 16 17 C -0.02 -0.39 10.73 83.18 0.89 0.50 16 18 C -0.10 -2.76 8.99 22.65 0.20 -2.56 16 19 C 0.07 1.97 4.61 86.73 0.40 2.37 16 20 C 0.16 5.13 3.36 46.18 0.15 5.28 16 21 H 0.09 2.63 8.12 -2.39 -0.02 2.61 16 22 N -0.72 -31.61 4.62 -317.33 -1.47 -33.07 16 23 C -0.23 -11.38 9.98 84.03 0.84 -10.54 16 24 H 0.09 3.94 7.83 -2.91 -0.02 3.92 16 25 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 26 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 27 Si 0.97 43.21 29.55 68.60 2.03 45.24 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 29 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 30 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 31 H 0.04 1.34 6.39 -2.39 -0.02 1.32 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.05 1.74 7.99 -2.38 -0.02 1.72 16 35 H 0.08 2.36 8.09 -2.39 -0.02 2.35 16 36 H 0.17 4.02 2.77 -7.27 -0.02 4.00 16 37 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 38 H 0.17 1.78 6.69 -2.91 -0.02 1.76 16 39 H 0.16 3.55 7.01 -2.91 -0.02 3.53 16 40 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 42 H 0.19 2.07 7.00 -2.91 -0.02 2.05 16 43 H 0.13 3.77 6.31 -2.91 -0.02 3.75 16 44 H 0.10 2.30 6.68 -2.39 -0.02 2.28 16 45 H 0.07 2.40 6.69 -2.39 -0.02 2.38 16 46 H 0.37 18.42 6.11 -92.71 -0.57 17.85 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -69.38 378.79 4.36 -65.02 By element: Atomic # 1 Polarization: 38.88 SS G_CDS: 0.43 Total: 39.31 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.93 Total: -3.23 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -4.96 Total: -121.91 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -69.38 4.36 -65.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054873749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.102 kcal (2) G-P(sol) polarization free energy of solvation -69.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds