Wall clock time and date at job start Tue Mar 31 2020 22:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.88342 * 2 1 4 4 C 1.55133 * 110.90526 * 124.09148 * 2 1 3 5 5 N 1.47421 * 104.72071 * 155.27303 * 4 2 1 6 6 C 1.34775 * 125.64607 * 155.81740 * 5 4 2 7 7 O 1.21543 * 120.00124 * 4.86383 * 6 5 4 8 8 C 1.47861 * 119.99863 * 184.86057 * 6 5 4 9 9 C 1.39615 * 120.11444 * 171.93560 * 8 6 5 10 10 C 1.37973 * 119.98587 * 180.02562 * 9 8 6 11 11 C 1.38265 * 120.22107 * 359.97438 * 10 9 8 12 12 C 1.38912 * 120.22059 * 359.77049 * 11 10 9 13 13 N 1.40228 * 119.98745 * 180.25811 * 12 11 10 14 14 C 1.36568 * 125.66397 * 179.97438 * 13 12 11 15 15 C 1.34853 * 108.19928 * 179.82894 * 14 13 12 16 16 C 1.40936 * 107.46959 * 0.42206 * 15 14 13 17 17 C 1.34856 * 107.46274 * 359.73948 * 16 15 14 18 18 C 1.38586 * 120.01505 * 0.50403 * 12 11 10 19 19 C 1.47020 * 108.70379 * 335.55530 * 5 4 2 20 20 C 1.54322 * 107.27155 * 1.28560 * 19 5 4 21 21 H 1.08997 * 110.72245 * 263.82856 * 20 19 5 22 22 N 1.46503 * 110.72086 * 140.55440 * 20 19 5 23 23 C 1.36941 * 119.99838 * 86.45341 * 22 20 19 24 24 H 1.07992 * 120.00226 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00018 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99779 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47221 * 60.00169 * 27 25 23 29 29 H 1.48500 * 109.46920 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47083 * 299.99958 * 27 25 23 31 31 H 1.08999 * 109.47279 * 183.88339 * 1 2 3 32 32 H 1.09000 * 109.47267 * 303.88277 * 1 2 3 33 33 H 1.09002 * 109.47050 * 63.87975 * 1 2 3 34 34 H 1.09002 * 110.49136 * 36.43336 * 4 2 1 35 35 H 1.08994 * 110.34597 * 274.03919 * 4 2 1 36 36 H 1.08002 * 120.00518 * 0.04974 * 9 8 6 37 37 H 1.08004 * 119.89104 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.88605 * 180.02562 * 11 10 9 39 39 H 1.07999 * 125.89916 * 359.96054 * 14 13 12 40 40 H 1.07999 * 126.26663 * 180.16464 * 15 14 13 41 41 H 1.07998 * 126.26910 * 179.73603 * 16 15 14 42 42 H 1.08002 * 125.89355 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.10623 * 179.74397 * 18 12 11 44 44 H 1.09005 * 109.88333 * 120.70035 * 19 5 4 45 45 H 1.08997 * 109.88649 * 241.86671 * 19 5 4 46 46 H 0.96995 * 119.99966 * 266.45597 * 22 20 19 47 47 H 0.96997 * 120.00376 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0836 -0.8123 1.2002 5 7 3.4271 -1.2433 0.7730 6 6 4.4476 -1.5621 1.5936 7 8 4.2740 -1.5915 2.7962 8 6 5.7783 -1.8763 1.0308 9 6 6.8759 -2.0414 1.8778 10 6 8.1165 -2.3340 1.3498 11 6 8.2778 -2.4651 -0.0172 12 6 7.1908 -2.3078 -0.8677 13 7 7.3589 -2.4472 -2.2529 14 6 6.3751 -2.3181 -3.1913 15 6 6.9236 -2.5181 -4.4069 16 6 8.2929 -2.7899 -4.2136 17 6 8.5321 -2.7402 -2.8873 18 6 5.9415 -2.0082 -0.3480 19 6 3.4674 -1.2739 -0.6964 20 6 2.0861 -0.8075 -1.2024 21 1 1.4467 -1.6627 -1.4215 22 7 2.2286 0.0504 -2.3814 23 6 2.3034 -0.5081 -3.6295 24 1 2.2568 -1.5808 -3.7448 25 6 2.4389 0.3048 -4.7466 26 7 2.4951 1.6122 -4.6062 27 14 2.5401 -0.4570 -6.4492 28 1 1.3032 -1.2334 -6.7185 29 1 2.6804 0.6175 -7.4646 30 1 3.7166 -1.3605 -6.5181 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3634 0.5729 0.8531 33 1 -0.3633 0.4524 -0.9227 34 1 1.4523 -1.6786 1.3982 35 1 2.1516 -0.1809 2.0860 36 1 6.7536 -1.9406 2.9461 37 1 8.9644 -2.4619 2.0064 38 1 9.2513 -2.6946 -0.4246 39 1 5.3375 -2.0925 -2.9941 40 1 6.4072 -2.4814 -5.3547 41 1 9.0179 -2.9995 -4.9861 42 1 9.4867 -2.9042 -2.4095 43 1 5.0963 -1.8815 -1.0082 44 1 4.2426 -0.5994 -1.0601 45 1 3.6650 -2.2890 -1.0408 46 1 2.2701 1.0139 -2.2779 47 1 2.5902 2.1803 -5.3867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054873750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:32 Heat of formation + Delta-G solvation = 88.052578 kcal Electronic energy + Delta-G solvation = -29783.989521 eV Core-core repulsion = 25934.039996 eV Total energy + Delta-G solvation = -3849.949525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58936 -40.31857 -38.53656 -37.50000 -34.22923 -33.14734 -33.04232 -31.39700 -30.67787 -28.84627 -28.75553 -27.77979 -26.48027 -24.55800 -23.48186 -23.03106 -21.60092 -20.66089 -20.11062 -19.83938 -19.51832 -17.87746 -17.20932 -16.85218 -16.20787 -16.11015 -15.58541 -14.97613 -14.81521 -14.69515 -14.35580 -13.99476 -13.72170 -13.65584 -13.43060 -13.28050 -13.09546 -12.73720 -12.68328 -12.41174 -12.24366 -12.17658 -12.06523 -11.73957 -11.70169 -11.44772 -11.18510 -10.95531 -10.69925 -10.55224 -10.34745 -10.03888 -9.95477 -9.87300 -9.77902 -9.21945 -9.04252 -8.50990 -8.10911 -7.97869 -7.17719 -5.91659 -3.23728 0.63362 0.95720 2.38102 2.85591 2.96818 3.06323 3.17041 3.36664 3.41952 3.43205 3.77553 4.33298 4.47311 4.57352 4.74717 4.92202 4.93799 4.99924 5.07559 5.10100 5.15770 5.27145 5.44669 5.47120 5.52935 5.56965 5.58740 5.67526 5.73603 5.75679 5.79575 5.90827 5.95586 6.04415 6.09222 6.12335 6.17556 6.23114 6.34729 6.40646 6.41767 6.45491 6.52846 6.55908 6.74638 7.04839 7.30064 7.51238 7.55082 7.61621 8.19417 8.25126 9.37579 9.89697 10.24737 11.29724 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007477 B = 0.005670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.072509 B = 4936.802795 C = 8374.578460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.571 3.429 7 O -0.547 6.547 8 C -0.099 4.099 9 C -0.079 4.079 10 C -0.103 4.103 11 C -0.123 4.123 12 C 0.138 3.862 13 N -0.399 5.399 14 C -0.001 4.001 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.026 4.026 18 C -0.143 4.143 19 C 0.058 3.942 20 C 0.176 3.824 21 H 0.069 0.931 22 N -0.710 5.710 23 C -0.256 4.256 24 H 0.072 0.928 25 C -0.001 4.001 26 N -0.926 5.926 27 Si 0.903 3.097 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.132 0.868 39 H 0.173 0.827 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.178 0.822 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.388 0.612 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.189 -7.646 9.056 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.336 5.336 6 C 0.360 3.640 7 O -0.426 6.426 8 C -0.103 4.103 9 C -0.099 4.099 10 C -0.122 4.122 11 C -0.143 4.143 12 C 0.045 3.955 13 N -0.071 5.071 14 C -0.127 4.127 15 C -0.211 4.211 16 C -0.212 4.212 17 C -0.152 4.152 18 C -0.162 4.162 19 C -0.068 4.068 20 C 0.063 3.937 21 H 0.087 0.913 22 N -0.350 5.350 23 C -0.387 4.387 24 H 0.090 0.910 25 C -0.198 4.198 26 N -0.572 5.572 27 Si 0.734 3.266 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.190 0.810 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.178 0.822 43 H 0.194 0.806 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.222 0.778 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.099 -7.714 9.795 14.867 hybrid contribution 0.335 -0.035 -1.152 1.200 sum 8.434 -7.749 8.643 14.348 Atomic orbital electron populations 1.21612 0.93659 1.01639 1.02218 1.22675 0.96494 0.99785 0.94363 0.89641 1.22367 0.82255 0.98266 0.97938 1.48378 1.12035 1.65425 1.07807 1.17865 0.83277 0.77250 0.85584 1.90740 1.83755 1.53810 1.14296 1.19719 0.94135 1.03558 0.92892 1.21268 0.91228 0.96839 1.00532 1.20928 0.97469 0.99634 0.94120 1.21007 0.97759 1.02020 0.93486 1.17821 0.94852 1.01041 0.81767 1.41654 1.09129 1.53158 1.03192 1.22194 0.94831 1.07975 0.87745 1.21058 0.94700 1.08046 0.97327 1.20985 0.96803 1.08698 0.94732 1.21773 0.89993 1.10511 0.92940 1.22724 0.98167 0.99105 0.96234 1.23855 1.03969 1.00734 0.78196 1.21304 0.91180 0.94093 0.87124 0.91298 1.42355 1.86867 1.05285 1.00444 1.19148 1.44170 0.91860 0.83480 0.91006 1.24738 1.01852 0.95274 0.97930 1.69637 1.55730 1.02347 1.29497 0.86337 0.78115 0.78039 0.84154 1.21176 1.21670 1.20688 0.92775 0.93077 0.91225 0.91281 0.90695 0.84333 0.84606 0.85061 0.81004 0.84035 0.84411 0.82154 0.80582 0.89791 0.91568 0.77769 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.31 37.16 0.35 -1.41 16 2 C -0.11 -1.68 3.26 -88.35 -0.29 -1.96 16 3 H 0.09 1.35 8.00 -51.93 -0.42 0.93 16 4 C 0.11 1.63 6.36 -2.41 -0.02 1.61 16 5 N -0.60 -9.49 3.32 -174.94 -0.58 -10.08 16 6 C 0.57 9.46 7.81 -12.32 -0.10 9.37 16 7 O -0.55 -10.18 16.67 5.33 0.09 -10.09 16 8 C -0.10 -1.47 5.87 -104.99 -0.62 -2.09 16 9 C -0.08 -1.00 9.59 -39.16 -0.38 -1.38 16 10 C -0.10 -1.07 10.02 -39.67 -0.40 -1.47 16 11 C -0.12 -1.39 9.45 -39.32 -0.37 -1.76 16 12 C 0.14 1.93 6.61 -83.64 -0.55 1.37 16 13 N -0.40 -5.87 2.97 -60.96 -0.18 -6.05 16 14 C 0.00 -0.02 10.73 -16.64 -0.18 -0.20 16 15 C -0.19 -2.96 10.86 -39.76 -0.43 -3.40 16 16 C -0.19 -2.57 10.86 -39.76 -0.43 -3.00 16 17 C -0.03 -0.34 10.73 -16.65 -0.18 -0.52 16 18 C -0.14 -2.12 8.00 -39.00 -0.31 -2.43 16 19 C 0.06 0.93 4.62 -3.07 -0.01 0.92 16 20 C 0.18 3.03 3.06 -66.10 -0.20 2.83 16 21 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 22 N -0.71 -15.51 5.18 -51.65 -0.27 -15.78 16 23 C -0.26 -6.28 9.98 -15.05 -0.15 -6.43 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 26 N -0.93 -25.96 13.06 55.49 0.72 -25.24 16 27 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 28 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 31 H 0.05 0.65 8.07 -51.93 -0.42 0.24 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.91 7.99 -51.93 -0.41 0.50 16 35 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 36 H 0.14 1.65 7.67 -52.49 -0.40 1.24 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.13 1.16 6.69 -52.49 -0.35 0.81 16 39 H 0.17 2.84 7.00 -52.49 -0.37 2.48 16 40 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 41 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.16 1.54 7.00 -52.49 -0.37 1.17 16 43 H 0.18 2.71 1.42 -56.96 -0.08 2.62 16 44 H 0.08 1.49 6.57 -51.93 -0.34 1.15 16 45 H 0.07 1.02 6.79 -51.93 -0.35 0.67 16 46 H 0.39 9.25 7.71 -40.82 -0.31 8.94 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -29.63 382.31 -10.17 -39.79 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -6.32 Total: 15.94 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -4.36 Total: -10.05 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.31 Total: -57.15 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.63 -10.17 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054873750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.847 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds